Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g00953 ATGAGTGCCAACCCTAGTACTAGCGGCGGCGGAAGTGGCGGCGGAGGAGGAGGAGGAGTAGGAGGAGGTCTGGGGAGTGGCGGCGGGGGTGGGCCATGTGGGGCCTGCAAGTTTCTTCGAAGAAAGTGCGTTCCAGGGTGCATATTTGCCCCATATTTCGACTCTGAACAAGGCGCCGCCCATTTCGCAGCTGTCCACAAGGTGTTCGGAGCCAGCAATGTGTCCAAGCTCCTCCTCCATATCCCTATCCATAAGCGCCCCGACGCCGTGGTCACGATTTGCTACGAGGCCCAGGCTCGCCTCCGAGACCCTGTCTATGGCTGTGTCTCTCATATCTTTGCCCTTCAACAACAGGTGGTGAGTTTGCAAGCCGAGCTGTCGTACCTCCAAGCCCAACTAGCATCACTGGAACTGCCGTCGCCACCAAACCCGCCACCTCCACCTCCACCACCAAGTTTCCAAGGGGTACCGCCGCTTTCCATCTCAGACCTGCCATCCCCCCCCTCCCTGCCAGCCACTTACGACCTGTCGTCCCTCTTCGACCCAATGGCTCAGCCTGCCTGGGTCTTGCCACAGCAGCGCCTCGACCCTCGCCAGTTTACCGGGGGTGGAGGTGGTGGTGGCGGCGGCGGCAGCGGCTTGTCCACTGTGGCCGGAGAAGGCGATCTTCAAGCCTTGGCCCGTGAACTCCTGCATAGACACGGCGCTCCACCAAGCTCCGACTCCTCATCGCCGCCGTCCGTCTCTAAATAA 753 61.22 MSANPSTSGGGSGGGGGGGVGGGLGSGGGGGPCGACKFLRRKCVPGCIFAPYFDSEQGAAHFAAVHKVFGASNVSKLLLHIPIHKRPDAVVTICYEAQARLRDPVYGCVSHIFALQQQVVSLQAELSYLQAQLASLELPSPPNPPPPPPPPSFQGVPPLSISDLPSPPSLPATYDLSSLFDPMAQPAWVLPQQRLDPRQFTGGGGGGGGGGSGLSTVAGEGDLQALARELLHRHGAPPSSDSSSPPSVSK 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5951982 5954251 - CmaCh08G009530.1 Cma08g00953 299648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g00953 250 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 236 - -
Cma08g00953 250 MobiDBLite consensus disorder prediction 138 165 - -
Cma08g00953 250 MobiDBLite consensus disorder prediction 137 167 - -
Cma08g00953 250 MobiDBLite consensus disorder prediction 192 222 - -
Cma08g00953 250 Pfam Lateral organ boundaries (LOB) domain 32 130 IPR004883 -
Cma08g00953 250 PANTHER LOB DOMAIN-CONTAINING PROTEIN 18 1 236 - -
Cma08g00953 250 ProSiteProfiles LOB domain profile. 31 133 IPR004883 -
Cma08g00953 250 MobiDBLite consensus disorder prediction 231 250 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma08g00953 Cma17g00029 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00202 Cma-Chr4:958291 Cma08g00953 Cma-Chr8:5951982 7.46E-47 dispersed
Cma04g01170 Cma-Chr4:5968312 Cma08g00953 Cma-Chr8:5951982 3.65E-45 dispersed
Cma08g00953 Cma-Chr8:5951982 Cma17g00029 Cma-Chr17:126154 8.55E-65 dispersed
Cma06g00902 Cma-Chr6:5807568 Cma08g00953 Cma-Chr8:5951982 9.96E-33 transposed
Cma14g01981 Cma-Chr14:13925865 Cma08g00953 Cma-Chr8:5951982 4.69E-62 wgd
Cma17g00028 Cma-Chr17:119807 Cma08g00953 Cma-Chr8:5951982 8.29E-103 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35541 PF03195 LOB 1.30E-38 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g00953 K21994 - csv:101220603 317.005