Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g00958 ATGTCAGTTTTAGGGCGGAGAGGAATTCATTACTTTCAGAAACTAAATGCAGCAAACATTCCCACTGCATTGATTGAGAAGGGTCAAAATCGTGTTATTGAAGCTTCTCTAACACTCATTCGCGAGAGAGCAAAGCTCAAGGGTGAGCTCGTGCGTGCTTTAGGAGGTGCTGTAGCATCAGCGTCTCTTCTTGGAGTTCCTTTAGGACATAACTCATCATTCCTTCAAGGTCCAGCATTTGCACCTCCTCGGATCAGGGAGGCCATCTGGTGCGGGAGTACGAATCCAACTACTGAAGAAGGGAAAGAACTTACTGACCCCAGAGTGCTGACTGATGTCGGTGATGTCCCTGTCCAAGAGATCAGGGACTGCGGTGTAGATGATGAAAGATTGATGAAAGTTGTGAGCGAGTCTGTCAAGCTGGTGATGGAAGAGGATCCACTACGTCCACTGGTTTTAGGAGGCGACCACTCCATATCTTACCCTGTTGTCAGAGCTGTCTCTGAGAAGCTCGGGGGTCAAGTTGATATTCTTCATCTCGATGCCCATCCCGATAATTATGATGCTTATGAGGGAAACTACTTCTCGCATGCTTCTTCTTTTGCACGAATTATGGAAGGTGGTTATGCTAGACGACTTTTGCAGGTTGGTATAAGATCAATATCTCAAGAAGGAAGAGACCAGTGCAAAAGATTTGGAGTCGAGCTGTATGAAATGCGAACCTTTTCAAGAGATCGTGAATATTTAGAAAATTTGAAACTGGGGGAAGGTGTAAAGGGTGTTTACGTTTCAATAGACGTCGACTCCCTCGATCCAGCATTTGCTCCTGGAGTGTCCCATATTGAGCCAGGTGGTTTGTCTTTCCGTGATGTTCTGAACATCATCCACAATCTTAAAGGGGACATCGTGGGTGCAGACGTCGTCGAGTTCAACCCTCAGCGAGACACGGTCGATGGGATGACAGCCATGGTTGCTGCTAAATTGGTGTCAATTTGCTGGTTTACAATCCATTTTGTTTCGATCTCTGCCCGGTGCCCTTCGTTGAATCTCGCGGGAGTCTTTCTGGAGAGTAAAATGGATGGACCAACTGGTCGTGGCGGCGGCATGGATATGAATTTACCAAACTATAAGCTTGGGAAAACCCTTGGCATTGGTTCATTTGGGAAAGTAAAAATTGCAGAGCATGCTTTAACTGGTCATAAAGTTGCTATTAAGATACTTAACCGCCGGAAGATAAAAAACTTGGACATGGAAGAAAAAGTAAGGAGAGAGATTAAAATATTGAGATTGTTCATGCATCCTCACATTATACGGCTCTATGAAGTTATAGAGACCCCGACAGACATTTATGTTGTGATGGAGTACGTAAAATCTGGAGAGCTCTTTGATTATATTGTAGAAAAGGGAAGGTTGCAGGAAGATGAAGCCCGTATTTTTTTCCAACAGATAATTTCTGGTGTGGAGTACTGCCACCGGAATATGGTGGTGCACAGAGATCTTAAGCCTGAGAATTTGCTTTTGGACTCCAAATGTAATGTGAAGATTGCTGATTTTGGTTTGAGCAATATAATGCGTGATGGTCACTTTCTGAAGACAAGTTGTGGGAGTCCCAATTATGCTGCTCCAGAGGTAATCTCCGGAAAATTATATGCTGGACCTGAAGTAGATGTATGGAGTTGTGGTGTTATTTTGTATGCGCTTCTATGCGGCACTCTTCCTTTTGACGATGAAAACATTCCCAACCTTTTTAAGAAAATAAAGATTGATGAAGACATTCTTCAGGAGGTTGTAAAGATGGGATTTGACAGGAATCAGCTGGTGGAGTCTCTTCGTAACCGAATTCAAAATGAGGCTACAGTTGCTTATTATTTGTTGCTGGACAACCGCTTCCGTGTTTCTAGTGGTTATCTTGGAGCTGAGTTTCAGGAGACTATGGAAACAGGATTCAACCGTATGCACCCTGGTGAACCTACAAGTCCTGTTGTAGGGCACCGTCATCCTGGATATATGGATTACCAAGGAATGGGATTAAGATCACAGTTTCCTGTTGAGAGAAAGTGGGCTCTGGGACTACAGTCTCGCGCTCATCCACGTGAAATTATGACCGAGGTTCTTAAAGCTCTACGTGAGCTCAATGTGGCTTGGAAGAAAATTGGGCACTACAATATGAAATGTAGGTGGCTACCTGGAATTCCAGGCCATCATGAAGGCATGATCAACAGCCCTGTGCATAGTAATCATTACTTCGGGGACGAGTCTACCATCATTGAAAACGATGGCGTCGTTAAATTGCCTAATGTTATCAAGTTTGAAGTTCAGCTGTCGGTGTTCTCTTCGTCGAGGTTCCCGAAATCCTTTCGTCTTTGTTATCTTCGGTCTCAAATCTGTATTGATAGTTACTTTTTAAGTGGTAGTCACAATTACAGTGACAGTTACGTTTATAGTTACATTTGTGGTGAAGGTGGAAATAGTAGTGAAAGTGAGAGTTCCAGTATAAGAACTAGCACGGATGGAAGTGATTTAACTAGAACGGAGAGTTCTACGGAAAGTTCTACGGAAAGTTCTACGGAAAGTTCTATCGAAAGTTCTACGGAAAGTTCTNNNNNNNNNNCTCGAGAATTGGGAGTTCCTATCGTAATGCATGACTACTTAACAGGTGGATTCACTGCAAATACTAGCTTGGCTCATTATTGCCGAGATAATGGTCTACTTCTTCACATTCACCGTGCAATGCATGCCGTTATTGATAGACAGAAGAATCATGGTATGCACTTCCGTGTACTAGCTAAAGCGTTACGTCTGTCTGGTGGAGACCATATTCACGCTGGTACCGTAGTAGGTAAACTTGAAGGGGAAAGAGACATCACTTTAGGCTTTGTTGATTTACTACGTGATGATTTTGTTGAAAAAGATCGAAGCCGCGGTATTTATTTCACTCAAGATTGGGTCTCTTTACCAGGTGTTCTGCCAGTGGCTTCCGGTGGTATTCACGTTTGGCATATGCCTGCTCTAACCGAGATTTTTGGAGATGATTCTGTACTACAATTCGGCGGAGGAACTTTGGGGCACCCTTGGGGTAATGCACCAGGTGCCGTAGCTAACCGAGTAGCTCTAGAAGCATGTGTACAAGCTCGTAATGAGGGACGTGATCTTGCTCGTGAGGGTAATGAAATTATCCGTGAGGCTAGTAAATGGAGTCCTGAACTAGCTGCTGCTTGTGAAGTACTCTTTGATATCCATCAATTTAGAAATTGGGATACGAGCTTCAGCTATAAAGGGGTATCTCGTGGCAACGTCATAGTCACGGAGCCGGGCGAACTTGCGAAGATGACCCAAGACGCCGAGATGAAAGAGATTCCTGCTCCATTGTCATCTTCTACCTCTTCAACTTCCCCCTCAACTCTGCAGCATTTGAAAGAGATTGTGTCGCTTATTGAGACTGGTGCCTATGCCCGGGAAGTTCGGCGTATTGTTCGTGCCATTCGTCTGACTATGGCGCTGAGGCGGAAGTTGAAGGCTTCTGTTCTTTCTCAATTTCTGAATCTTGTTCTTCCGTCAGGGTCCGAGGTGTACTCTATGTTATCGTCCTTTCTTCCCAAGGAGGAAGACTGTGAAATGGGTGTTGACTCGGGAACGCAAGCACCTACCAAACACCCCTTGCCCGAGATAGAGATATTTTGCTACTTGATTGTGCTAATCTTTTTGATTGATCAGAAGAAATATGACGATGCTAAGGCTTGTGCTTCAGCAAGCATTGCACGGCTTAAGAACCTAAATAGGAGAACAGTCGACGTGTTGGCTTCCAGGCTCTACTTCTATTACTCCCTCAGCTACGAACTCAACGGTGATCTAGCTGAAATAAGGGGCAACCTCCTAGCCTTGCATCGCATTGCAACCTTGCGCCATGATGAATTGGGTCAGGAAACCCTCCTTAACCTACTACTTCGCAATTACCTCCACTATAACCTTTATGATCAAGCAGAGAAGTTGAGGTCCAAGGCACCACGATTTGAAGCTCACTCGAATCAGCAGGCAAGTTTGAAGTACCTGTTTTACCTCGGCAAGATCAGGACCATTCAACTGGAGTATACCGATGCAAAGGAGTCGCTTCTGCAAGCTGCTAGGAAAGCACCTATTGCAGCACTTGGTTTTCGAGTGCAGTGTAACAAATGGGCAATCATTGTTCGCTTGTTGCTGGGAGAAATCCCCGAGAGGACTGTTTTCATGCAGAAAGGCATGGAAACAGCTCTGAGGCCATACTTTGAACTTACAAATGCTGTGAGGATTGGTGACTTGGAGCTTTTCAGAACCGTTGCAGAGAAGTTCTCTAGTACTTTCAGCTCAGATCGAACCAACAATTTGATCGTGAGGCTGCGACATAATGTCATAAGGACTGGGCTTCGCAACATTAGCATTTCGTATTCACGTATTTCTCTGGCTGATGTTGCTAAAAAGCTGAGATTGGACTCTGCAAATCCTGTTGCTGATGCTGAGAGTATTGTCTCCAAGGCAATCCGAGATGGAGCAATCGATGCAACAGTCGATCATGCGAATGGATGGATGGTATCGAAGGAGACCGGCGATATCTACTCAACAAATGATCCTCAAATTGCTTTCAACTCAAGGATTGCATTTTGCCTGAATATGCATAACGAGGCAGTTCGTGCTCTTCGGTTCCCGCCAAACTCGCACAAAGAGAAAGAAAGTGCAGAGAAAAGGAGAGAAAGACAACAGCAGGAGCAAGAACTTGCAAAGCACATTGCTGAGGAGGATGATGACGACTTCTAG 4788 44.63 MSVLGRRGIHYFQKLNAANIPTALIEKGQNRVIEASLTLIRERAKLKGELVRALGGAVASASLLGVPLGHNSSFLQGPAFAPPRIREAIWCGSTNPTTEEGKELTDPRVLTDVGDVPVQEIRDCGVDDERLMKVVSESVKLVMEEDPLRPLVLGGDHSISYPVVRAVSEKLGGQVDILHLDAHPDNYDAYEGNYFSHASSFARIMEGGYARRLLQVGIRSISQEGRDQCKRFGVELYEMRTFSRDREYLENLKLGEGVKGVYVSIDVDSLDPAFAPGVSHIEPGGLSFRDVLNIIHNLKGDIVGADVVEFNPQRDTVDGMTAMVAAKLVSICWFTIHFVSISARCPSLNLAGVFLESKMDGPTGRGGGMDMNLPNYKLGKTLGIGSFGKVKIAEHALTGHKVAIKILNRRKIKNLDMEEKVRREIKILRLFMHPHIIRLYEVIETPTDIYVVMEYVKSGELFDYIVEKGRLQEDEARIFFQQIISGVEYCHRNMVVHRDLKPENLLLDSKCNVKIADFGLSNIMRDGHFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYALLCGTLPFDDENIPNLFKKIKIDEDILQEVVKMGFDRNQLVESLRNRIQNEATVAYYLLLDNRFRVSSGYLGAEFQETMETGFNRMHPGEPTSPVVGHRHPGYMDYQGMGLRSQFPVERKWALGLQSRAHPREIMTEVLKALRELNVAWKKIGHYNMKCRWLPGIPGHHEGMINSPVHSNHYFGDESTIIENDGVVKLPNVIKFEVQLSVFSSSRFPKSFRLCYLRSQICIDSYFLSGSHNYSDSYVYSYICGEGGNSSESESSSIRTSTDGSDLTRTESSTESSTESSTESSIESSTESSXXXXRELGVPIVMHDYLTGGFTANTSLAHYCRDNGLLLHIHRAMHAVIDRQKNHGMHFRVLAKALRLSGGDHIHAGTVVGKLEGERDITLGFVDLLRDDFVEKDRSRGIYFTQDWVSLPGVLPVASGGIHVWHMPALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNEIIREASKWSPELAAACEVLFDIHQFRNWDTSFSYKGVSRGNVIVTEPGELAKMTQDAEMKEIPAPLSSSTSSTSPSTLQHLKEIVSLIETGAYAREVRRIVRAIRLTMALRRKLKASVLSQFLNLVLPSGSEVYSMLSSFLPKEEDCEMGVDSGTQAPTKHPLPEIEIFCYLIVLIFLIDQKKYDDAKACASASIARLKNLNRRTVDVLASRLYFYYSLSYELNGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQASLKYLFYLGKIRTIQLEYTDAKESLLQAARKAPIAALGFRVQCNKWAIIVRLLLGEIPERTVFMQKGMETALRPYFELTNAVRIGDLELFRTVAEKFSSTFSSDRTNNLIVRLRHNVIRTGLRNISISYSRISLADVAKKLRLDSANPVADAESIVSKAIRDGAIDATVDHANGWMVSKETGDIYSTNDPQIAFNSRIAFCLNMHNEAVRALRFPPNSHKEKESAEKRRERQQQEQELAKHIAEEDDDDF 1595
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5983261 6007789 - CmaCh08G009580.1 Cma08g00958 299653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g00958 1595 ProSiteProfiles PCI domain profile. 1347 1528 IPR000717 -
Cma08g00958 1595 SMART serkin_6 376 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma08g00958 1595 Pfam PCI domain 1419 1524 IPR000717 -
Cma08g00958 1595 ProSitePatterns Arginase family signature. 264 285 IPR020855 GO:0016813|GO:0046872
Cma08g00958 1595 CDD Agmatinase-like_2 63 329 - -
Cma08g00958 1595 SUPERFAMILY RuBisCo, C-terminal domain 871 1077 IPR036376 GO:0000287
Cma08g00958 1595 Gene3D Transferase(Phosphotransferase) domain 1 369 643 - -
Cma08g00958 1595 ProSiteProfiles Arginase family profile. 52 329 IPR006035 GO:0046872
Cma08g00958 1595 SMART uba_6 589 626 IPR015940 -
Cma08g00958 1595 MobiDBLite consensus disorder prediction 1559 1588 - -
Cma08g00958 1595 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 587 627 IPR015940 -
Cma08g00958 1595 ProSitePatterns Protein kinases ATP-binding region signature. 382 405 IPR017441 GO:0005524
Cma08g00958 1595 CDD AMPKA_C 684 774 - -
Cma08g00958 1595 SMART PINT_4 1453 1546 IPR000717 -
Cma08g00958 1595 SUPERFAMILY KA1-like 623 774 IPR028375 -
Cma08g00958 1595 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3-RELATED 1110 1595 - -
Cma08g00958 1595 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3/COP9 SIGNALOSOME COMPLEX SUBUNIT 3 1110 1595 - -
Cma08g00958 1595 Coils Coil 1562 1589 - -
Cma08g00958 1595 CDD STKc_AMPK_alpha 373 587 - -
Cma08g00958 1595 Pfam Protein kinase domain 376 589 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma08g00958 1595 SUPERFAMILY Winged helix DNA-binding domain 1455 1530 IPR036390 -
Cma08g00958 1595 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 1453 1546 - -
Cma08g00958 1595 MobiDBLite consensus disorder prediction 1559 1595 - -
Cma08g00958 1595 Gene3D - 862 1089 IPR036376 GO:0000287
Cma08g00958 1595 SUPERFAMILY Protein kinase-like (PK-like) 373 588 IPR011009 -
Cma08g00958 1595 Pfam UBA/TS-N domain 588 624 IPR015940 -
Cma08g00958 1595 Gene3D Ureohydrolase domain 54 335 - -
Cma08g00958 1595 Pfam Ribulose bisphosphate carboxylase large chain, catalytic domain 872 1075 IPR000685 GO:0000287|GO:0016984
Cma08g00958 1595 Pfam Proteasome regulatory subunit C-terminal 1528 1594 IPR013586 GO:0000502|GO:0030234|GO:0042176
Cma08g00958 1595 MobiDBLite consensus disorder prediction 826 867 - -
Cma08g00958 1595 Pfam Arginase family 61 330 IPR006035 GO:0046872
Cma08g00958 1595 ProSitePatterns Serine/Threonine protein kinases active-site signature. 495 507 IPR008271 GO:0004672|GO:0006468
Cma08g00958 1595 SUPERFAMILY Arginase/deacetylase 60 329 IPR023696 -
Cma08g00958 1595 Gene3D - 1352 1543 - -
Cma08g00958 1595 Gene3D Kinase associated domain 1, KA1 690 783 - -
Cma08g00958 1595 CDD UBA_SnRK1_plant 588 628 - -
Cma08g00958 1595 ProSiteProfiles Protein kinase domain profile. 376 669 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00958 Cma-Chr8:5983261 Cma11g01368 Cma-Chr11:9059967 0 dispersed
Cma18g01139 Cma-Chr18:9209632 Cma08g00958 Cma-Chr8:5983261 2.88E-53 dispersed
Cma01g00897 Cma-Chr1:5206235 Cma08g00958 Cma-Chr8:5983261 5.05E-85 transposed
Cma02g01155 Cma-Chr2:6819543 Cma08g00958 Cma-Chr8:5983261 5.33E-19 transposed
Cma07g00985 Cma-Chr7:4935768 Cma08g00958 Cma-Chr8:5983261 4.86E-26 transposed
Cma11g01008 Cma-Chr11:5451884 Cma08g00958 Cma-Chr8:5983261 1.41E-136 transposed
Cma11g01207 Cma-Chr11:7299800 Cma08g00958 Cma-Chr8:5983261 4.58E-29 transposed
Cma12g00778 Cma-Chr12:5168075 Cma08g00958 Cma-Chr8:5983261 6.37E-49 transposed
Cma17g00037 Cma-Chr17:160761 Cma08g00958 Cma-Chr8:5983261 0 transposed
Cma17g00040 Cma-Chr17:180554 Cma08g00958 Cma-Chr8:5983261 4.39E-127 transposed
Cma17g00036 Cma-Chr17:155072 Cma08g00958 Cma-Chr8:5983261 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68767 PF00491 Arginase 6.10E-65 CL0302 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g00958 K03033 - csv:101207427 830.861