Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g00962 ATGGCTGGCCTGTCGCTCAAGTGCGGGGATTGTGGCGCTCTCTTGAGATCCGTAGAAGAAGCTCAAGAACACGCTGAACTCACTTCTCATTCCAACTTCTCTGAGTCCACTGAAGCTGTGCTCAATCTCATCTGCACTGCTTGCGGCAAGCCTTGCCGATCCAAGACGGAAAGTGATTTGCACACGAAAAGGACTGGCCACACTGAGTTTACTGATAAGACTTTGGAGGCTGCAAAACCAATAAGCTTGGAGGCACCGAAGGTAGCTGCGGAGTCAGAAGATGGTGGGGATGCAAGTGCTAGCAAGTCTGAAGAAATGGTTGTGCCAGAGGTGAACAAGAGTATATTGGAGGAACTTGAAGCTATGGGCTTCCCAACAGCACGAGCAACCCGTGCACTTTATTATTCTGGAAATGCAAGTCTGGAGGCTGCAGTCAATTGGGTAGTCGAACATGAGAATGATCCAGAGATAGATCAGATGCCTTTGGTTCCTAAGGATACAAAGGTCGAGGCTCCCAAGCCTGCTCTTACACCTGAGCAACTGAAAGCAAAACAGCAGGAGCTAAGGGAACGAGCTCGGAAGAAAAAAGAGGAGGAAGAGAAGCTAGCAGAGAGAGAAAGGGAAAAGGAGAGAATTCGAATTGGCAAGGAGCTCTTAGAAGCAAAAAGGATCGAGGAATTAAACGAGAGAAAAAGAATATTGGCCTTGAGGAAAGCTGAAAAAGAAGAAGAGAAAAGAGCCAGAGAAAAAATTCGTCAAAAACTTGAAGAGGACAAGGCGGAAAGAAGACGGAGACTTGGGTTGCCAGCAGAAGATCCTTCAACTGCGAAACCTCCCGCCCCAGTTGTTGAAGAGAAAAAGCTCTCGTTGCCGGTCAGACCTGCTTCAAAAGCAGAGCAAATGAGAGAATGTTTGCGATCATTAAAGTCCAATCACAAGGAGGATGATGTTAAAGTGAAGAGGGCGTTTCAAACCCTTCTAACTTATGTGGGAAACGTGGTGAAAAATCCTGATGAAGAGAAGTTCAGAAAGATTAGACTCAGCAACCAAACTTTCCAGGATAGAGTGGGTGCACTGAGAGGAGGAATCGAGTTTCTAGAGCTGTGTGGGTTTGAGAAAATTGAAGGCGATGAGTTCTTGTTTCTGCCCAGAGACAAAGTTGACAGAGCAGTGCTTAATTCAGCTGGCTCTGAGCTCGACTCTGCAATTAAGAATCCCTTCTTTGGTGTTCTCTAA 1236 46.52 MAGLSLKCGDCGALLRSVEEAQEHAELTSHSNFSESTEAVLNLICTACGKPCRSKTESDLHTKRTGHTEFTDKTLEAAKPISLEAPKVAAESEDGGDASASKSEEMVVPEVNKSILEELEAMGFPTARATRALYYSGNASLEAAVNWVVEHENDPEIDQMPLVPKDTKVEAPKPALTPEQLKAKQQELRERARKKKEEEEKLAEREREKERIRIGKELLEAKRIEELNERKRILALRKAEKEEEKRAREKIRQKLEEDKAERRRRLGLPAEDPSTAKPPAPVVEEKKLSLPVRPASKAEQMRECLRSLKSNHKEDDVKVKRAFQTLLTYVGNVVKNPDEEKFRKIRLSNQTFQDRVGALRGGIEFLELCGFEKIEGDEFLFLPRDKVDRAVLNSAGSELDSAIKNPFFGVL 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6023388 6031720 - CmaCh08G009620.1 Cma08g00962 299657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g00962 411 SUPERFAMILY UBA-like 97 164 IPR009060 GO:0005515
Cma08g00962 411 PANTHER F13M7.16 PROTEIN 1 411 - -
Cma08g00962 411 MobiDBLite consensus disorder prediction 254 270 - -
Cma08g00962 411 ProSitePatterns Zinc finger C2H2 type domain signature. 8 30 IPR013087 -
Cma08g00962 411 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 110 151 IPR015940 -
Cma08g00962 411 MobiDBLite consensus disorder prediction 254 280 - -
Cma08g00962 411 Coils Coil 181 215 - -
Cma08g00962 411 MobiDBLite consensus disorder prediction 183 207 - -
Cma08g00962 411 CDD PUB_UBA_plant 305 411 - -
Cma08g00962 411 MobiDBLite consensus disorder prediction 54 106 - -
Cma08g00962 411 MobiDBLite consensus disorder prediction 54 74 - -
Cma08g00962 411 Pfam PUB domain 318 389 IPR018997 -
Cma08g00962 411 SMART PGNneu 321 384 - -
Cma08g00962 411 MobiDBLite consensus disorder prediction 171 207 - -
Cma08g00962 411 Gene3D - 303 401 - -
Cma08g00962 411 SMART uba_6 112 150 IPR015940 -
Cma08g00962 411 Pfam UBA/TS-N domain 112 147 IPR015940 -
Cma08g00962 411 PANTHER F13M7.16 PROTEIN 1 411 - -
Cma08g00962 411 SUPERFAMILY PUG domain-like 297 407 IPR036339 -
Cma08g00962 411 Coils Coil 224 261 - -
Cma08g00962 411 CDD UBA_PUB_plant 110 158 - -
Cma08g00962 411 Gene3D - 113 157 - -
Cma08g00962 411 ProSitePatterns Zinc finger C2H2 type domain signature. 45 67 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00962 Cma-Chr8:6023388 Cma12g01001 Cma-Chr12:8005448 5.41E-72 dispersed
Cma08g00962 Cma-Chr8:6023388 Cma05g00670 Cma-Chr5:3443900 4.31E-110 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g00962 K24348 - csv:101215434 699.123