Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g00978 ATGTACACGGCGGTGCTCGCGGCGGCGCTGGTAGCTGTAGCGGCAACGGTCTGGGTGTTGAAGAATGCGAACCGGTGGATCCACGAAACCTTCCGGTTGGGTTCAAAACGGTTCAACCTCCCACCCGGGGATCTGGGCTGGCCGTTCATCGGCAATATGTGGTCCTTTCTCAGAGCTTTCAAGTCCTCTCGTCCTGATTCTTTCATGGAATCCTTCGTCGCCAGGTATGGACGTACGGATATGTACAAATGTTTTATGTTTGGAAGTCCAAGTGTGATTGTGACATCAGCAGAAGCATGCAAAAGAGTTTTGAATGACGATGATGCGTTTGGTTCGGGATGGCCTCATTCCACCTTAAAGCTCATTGGAGAGAAGTCGTTCATTGGGATTTCTGCCAAAGAACACAAGCGTCTTCGTCGTATAACTGCTGCGCCCGTCAATGGCTATGAGGCATTGGCTACGTACCTCACGTATATAGAAAATGTGACGGTTTCTTCATTGCAAAAATGGCCTTCCATGGGACAAATAGAGTTCTTAACTGAGCTACGTAAACTTACTTTCAAGATCATTATGTACATATTTCTTAGCTCGGAGAGCGAGGTGGTGATGGAGGCTTTGGAGAGGGAGTACACAACCTTGAATTATGGTGTGAGGGCTATGGCTATCAACATTCCCGGTTTTGCTTACCATAAAGCACTCAAGGCACGAAAGAATCTCGTGACGACATTTCAGTCGATTGTGAGTCAGCGAAGGAAGGAGAGGGACAACAACGTGGCAACAACGAGAAGAGATATGATGGATGCTTTGCTAGATGTAGAAGATGAGAATGGTAGAAGGTTAAGTGATGAAGAGATCATTGATGTCTTGATAATGTACTTGAATGCAGGCCATGAATCTTCGGGGCATACTATGATGTGGGCAACAATTTTCCTACAACAACATCCCAATTTTCTTGAAAAGGCAAAGGCTGAGCAAGAAGAGATACTTAAAAAACGATCTCCGGGGCAAAAAGGTTTAACTCTTAAGGAAGTTCGAGAAATGGACTATCTTTCAAAGGTGATCGATGAAACACTACGAATCGTAACGTTCTCCCTCATGGTATTTCGAGAGGCAAAGCATGACGTGAACATTTGTGGTTATACCATTCCAAAAGGGTGGAAAGTCCTAGTTTGGTTCAGAAGTGTTCACTATGATCCTGAAACTTATCCGAACCCTAAACAATTTGATCCTTCAAGATGGGATGATTTCACACCAAAAGCTGGAAGCTTTCTTCCATTTGGAGGAGGAAGTAGACTGTGTCCCGGAAATGATCTTGCAAAGCTAGAAATCTCCGTCTTTCTCCATTATTTTCTCCTCAATTATCAGTTGGAAAGAGATAATCCAAATAGTCCTGTGAGGTATCTACCCCACTCGAGGCCTAAAGATCAGTGTTTGGCAAGGATCAAGAGAGTTGGTGCTCCATTTGATTGA 1470 44.63 MYTAVLAAALVAVAATVWVLKNANRWIHETFRLGSKRFNLPPGDLGWPFIGNMWSFLRAFKSSRPDSFMESFVARYGRTDMYKCFMFGSPSVIVTSAEACKRVLNDDDAFGSGWPHSTLKLIGEKSFIGISAKEHKRLRRITAAPVNGYEALATYLTYIENVTVSSLQKWPSMGQIEFLTELRKLTFKIIMYIFLSSESEVVMEALEREYTTLNYGVRAMAINIPGFAYHKALKARKNLVTTFQSIVSQRRKERDNNVATTRRDMMDALLDVEDENGRRLSDEEIIDVLIMYLNAGHESSGHTMMWATIFLQQHPNFLEKAKAEQEEILKKRSPGQKGLTLKEVREMDYLSKVIDETLRIVTFSLMVFREAKHDVNICGYTIPKGWKVLVWFRSVHYDPETYPNPKQFDPSRWDDFTPKAGSFLPFGGGSRLCPGNDLAKLEISVFLHYFLLNYQLERDNPNSPVRYLPHSRPKDQCLARIKRVGAPFD 489
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6108296 6112384 + CmaCh08G009780.1 Cma08g00978 299673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g00978 489 PANTHER CYTOCHROME P450 26 12 477 - -
Cma08g00978 489 Gene3D Cytochrome P450 31 484 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma08g00978 489 PANTHER ENT-KAURENOIC ACID OXIDASE 2 12 477 - -
Cma08g00978 489 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 426 435 IPR017972 GO:0005506|GO:0016705
Cma08g00978 489 PRINTS P450 superfamily signature 295 312 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma08g00978 489 PRINTS P450 superfamily signature 352 363 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma08g00978 489 PRINTS P450 superfamily signature 424 433 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma08g00978 489 PRINTS P450 superfamily signature 433 444 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma08g00978 489 Pfam Cytochrome P450 41 461 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma08g00978 489 PRINTS E-class P450 group I signature 304 330 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma08g00978 489 PRINTS E-class P450 group I signature 391 415 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma08g00978 489 PRINTS E-class P450 group I signature 423 433 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma08g00978 489 PRINTS E-class P450 group I signature 433 456 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma08g00978 489 SUPERFAMILY Cytochrome P450 32 482 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00726 Cma-Chr3:5830083 Cma08g00978 Cma-Chr8:6108296 9.79E-69 dispersed
Cma08g00978 Cma-Chr8:6108296 Cma19g00455 Cma-Chr19:5476342 2.96E-169 dispersed
Cma14g01950 Cma-Chr14:13730248 Cma08g00978 Cma-Chr8:6108296 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g00978 K04123 - csv:101220640 793.112