Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g00980 ATGGCTACTTTAAACTTAGGCTCCGCTTCTCACTTTGTTGATCAGCTTCAGCAACAACGCCCTGATCTCCACTTACAAACGCCGCCAAATTCCGACCATGTTACTAATCTCAACCACTACAACGGCGGTGGCTCTGGTGGCAGCAGTGGCGGTGATGTCATGGTTCGTAGACCTAGGGGTCGCCCGGCCGGGTCGAAGAACAAGCTGAAACCACCTGTAATCATCACGCGCGAGAGTGCTAATACACTTCGAGCTCATATCTTGGAGGTTGGTAGCGGCTGCGATGTGTTTGAGGCGATAGCCACCTATGCTCGACGGCGACAACGGGGGATCTGCGTGTTGAGTGGAAGTGGGATCGTGAATAATGTTAGCTTGCGTCAACCGACGGCAACTGGGTCGGTATTGACGCTTCAAGGGAGGTTTGAGATTTTATCGCTATCGGGATCGTTTCTTCCACCACCCGCTCCACCGGGTGCTACTAGTCTCACGATCTTTTTAGCTGGAGGACAAGGACAGGTCGTCGGAGGGAATGTTGTGGGAGCTTTGATGGCTTCGGGGCCGGTCATCATCATAGCGTCATCATTTAGTAACGTAGCGTATGAGAGGTTGCCATTGGAGGAAGAAGAGTTGTCGATGCAAGTAGGTGGTGGAGATGGGGACGGAGGTGACGGTGGCGACGATGGTCACAACAACCCTTTTCCCGACGCATCTTCGGGTTTGCCCTTTCTTAATCTTCCTATGAACATGCCCAATCAAAATCAATTTTTCGGTTGA 774 51.94 MATLNLGSASHFVDQLQQQRPDLHLQTPPNSDHVTNLNHYNGGGSGGSSGGDVMVRRPRGRPAGSKNKLKPPVIITRESANTLRAHILEVGSGCDVFEAIATYARRRQRGICVLSGSGIVNNVSLRQPTATGSVLTLQGRFEILSLSGSFLPPPAPPGATSLTIFLAGGQGQVVGGNVVGALMASGPVIIIASSFSNVAYERLPLEEEELSMQVGGGDGDGGDGGDDGHNNPFPDASSGLPFLNLPMNMPNQNQFFG 257
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6130529 6131640 - CmaCh08G009800.1 Cma08g00980 299675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g00980 257 Pfam Plants and Prokaryotes Conserved (PCC) domain 84 197 IPR005175 -
Cma08g00980 257 ProSiteProfiles PPC domain profile profile. 80 216 IPR005175 -
Cma08g00980 257 PIRSF ESCAROLA 2 255 IPR014476 GO:0003680
Cma08g00980 257 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 1 254 IPR014476 GO:0003680
Cma08g00980 257 Gene3D - 83 214 - -
Cma08g00980 257 MobiDBLite consensus disorder prediction 23 71 - -
Cma08g00980 257 MobiDBLite consensus disorder prediction 212 244 - -
Cma08g00980 257 SUPERFAMILY AF0104/ALDC/Ptd012-like 80 213 - -
Cma08g00980 257 MobiDBLite consensus disorder prediction 23 45 - -
Cma08g00980 257 CDD DUF296 84 167 IPR005175 -
Cma08g00980 257 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 1 254 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00980 Cma-Chr8:6130529 Cma19g00242 Cma-Chr19:1713777 1.55E-92 dispersed
Cma14g01956 Cma-Chr14:13756219 Cma08g00980 Cma-Chr8:6130529 7.21E-95 wgd
Cma17g00057 Cma-Chr17:253494 Cma08g00980 Cma-Chr8:6130529 2.40E-127 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g00980 - - csv:101203160 421.009