Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g00981 ATGACGGAATTTCTTGATTTGGAATCCCAGGATGGCGTCCGGATGCCGTGGAATGTGGTGCCCGGGACGAAGCAAGAAGCTAGCAACTGCATAGTTCCAGTTTCCGCCATGTATACGCCGATCAAAGCCTTCCCGAACATGCCGATGCTACCTTACGCTCCTCTTCGATGTCGTACTTGTCGCGCTATTCTCAATCCGTTTTCTATTGTTGATTTCGCTGCGAAGATCTGGATCTGTCCGTTTTGCTTTCAGCGGAATCATTTCCCTCCTCATTACGCCTCTATTTCCGATGATAACCTTCCGGCGGAGCTATTCCCGCAGTATACTACTATTGAATACGAGTCTTCTGGAGAAACGGTGTCTTCGGTCCCTTCGGTGTTCATGTTTGTGTTGGATACTTGTATAATTGAAGAGGAGATTGCGTTTTTGAAATCTGCTTTGTCTCAGGCTGTTGATCTGCTTCCTGATAATTCTTTGGTTGGGCTCATTACATATGGTACTTTTGTTCACGTTCATGAATTGGGGTTTGGTCAGATTCCGAAGACGTTTGTGTTTAAGGGCTCCAAGGATGTGTCCAAGGACCAGCTTCTGGAGCAGATGAACTTCTTTCTCAAGAAGCCCAAGCCTCCCACTGGTGTCATTGCTGGCGCGAGAGATGGACTTTCAACTGAGAGCATTTCTCGCTTTCTGCTGCCTAAGTCCGAGTGCGAATTTGCTCTCAATTCCGTTTTGGAGGAGCTGCAGAAAGACCCTTGGGCAGTTCCAGCGGATCAGCGAGCCCCGAGGTGCACTGGCACTGCCCTGAGCATTGCCGCCAGCTTGCTTGGCGCTTGTGTTCCCGGTTCAGGAGCAAGAATCTTAGCATTTGTTGGTGGGCCATCGACTGAAGGACCGGGTGCCATTGTGTCTAAAAATTTATCTGAACCAATTCGGTCTCACAAGGACCTGGATAAAGATTCTGCCCCTCATTTTCATAAAGCTGTGAAGTTCTATGAGGGACTCTCGAAGCAGCTTGTTCATCAAGGACATGTACTTGATCTATTCGCTTGTGCTCTTGACCAGGTCGGTATTGCTGAAATTAAAGTTGCAGTTGAAAAGACTGGAGGGCTTGTTGTGCTTGCAGAAAGTTTTGGCCACCCAGTTTTTAAGGATTCACTTAAACGTGTTTTTTCGGGTGAATATGATCTTGGTTTAGCATCAAATGGTATATTTGAGATCAATTGCTCAAAGGATATCAAAGTTCAGGGTGTTATTGGTCCTTGTGCCTCTCTTGAAAAGAAAGGTCCGTTGTGCTCAGACACTGTCATTGGTCAAGGAAATACAAGTGCATGGAAAATGTGTGGCTTTGATAAAGCAACAACTTTGAGTCTCATATTTGAAATTGTTAAAAAAGAGACCTCAGATGCTACTGTTCAATCTGCCAGCAATCAGTTTTACTTTCAATTTTTGACATTTGTTTCCAGTTATCAAAACAGCAGTGGTCAAATGAGACTCCGTGTTACAACCCTTTCTAGGAGATGGGTTGCTGGACCTGGAAGCATACAGGACTTGATTGCGGGGTTTGACCAAGAAGCTGCTGCTGCAGTCATGGCACGTCTAGTTTCCTTCAAGATGGAAAATGAGGCAGAGTTTGATCCTATAAGATGGTTGGATAAATCATTGATTCATCTTTGTTCCCGTTTTGGAGATTATCAGAAGGATACTCCATCTTCCTTCAGCTTATCTCCACGTTTTTCAATATTCCCTCAGTTTATCTTTCATTTGCGACGATCTCAGTTTGTGCAGGTTTTTAATAATAGTCCTGATGAGACTGCGTACTTCAGAATGATCCTGAACCGTGAGAATGTTGCTAATTCTGTAGTAATGATCCAACCGTCATTGATTTCTTACACATTTCATTCAGCCCCAGAACCAGTTCTTCTTGATGTAGCTGCCATTGCGGCTGACAGGATTCTCCTACTGGATGCATATTTCACTGTTGTTATCTTCCACGGGGCAACTATTGCTCAATGGAGGAAAGCTGGGTATCATAATCAGCCTGAACATCAGGCATTTGCCCAGTTGCTGCAAGCTCCTCGGGACGATGTAGATGCAACAATTAAGGAAAGATTTCCAGTACCACGTTTGGTGATCTGTGATCAGCATGGTTCGCAGGCACGTTTTCTTCTGGCAAAGCTGAATCCTTCAGCCACCTATAACACTGAGTCTCCCCTTCCCGGCGGAGATATCATCTTCACCGACGATGTCAGCTTCGAAGTCTTCTTAGATCATCTGCAGAGGTTAACCGTCCAATAA 2295 45.14 MTEFLDLESQDGVRMPWNVVPGTKQEASNCIVPVSAMYTPIKAFPNMPMLPYAPLRCRTCRAILNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDDNLPAELFPQYTTIEYESSGETVSSVPSVFMFVLDTCIIEEEIAFLKSALSQAVDLLPDNSLVGLITYGTFVHVHELGFGQIPKTFVFKGSKDVSKDQLLEQMNFFLKKPKPPTGVIAGARDGLSTESISRFLLPKSECEFALNSVLEELQKDPWAVPADQRAPRCTGTALSIAASLLGACVPGSGARILAFVGGPSTEGPGAIVSKNLSEPIRSHKDLDKDSAPHFHKAVKFYEGLSKQLVHQGHVLDLFACALDQVGIAEIKVAVEKTGGLVVLAESFGHPVFKDSLKRVFSGEYDLGLASNGIFEINCSKDIKVQGVIGPCASLEKKGPLCSDTVIGQGNTSAWKMCGFDKATTLSLIFEIVKKETSDATVQSASNQFYFQFLTFVSSYQNSSGQMRLRVTTLSRRWVAGPGSIQDLIAGFDQEAAAAVMARLVSFKMENEAEFDPIRWLDKSLIHLCSRFGDYQKDTPSSFSLSPRFSIFPQFIFHLRRSQFVQVFNNSPDETAYFRMILNRENVANSVVMIQPSLISYTFHSAPEPVLLDVAAIAADRILLLDAYFTVVIFHGATIAQWRKAGYHNQPEHQAFAQLLQAPRDDVDATIKERFPVPRLVICDQHGSQARFLLAKLNPSATYNTESPLPGGDIIFTDDVSFEVFLDHLQRLTVQ 764
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6134535 6145749 - CmaCh08G009810.1 Cma08g00981 299676

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g00981 764 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 1 764 - -
Cma08g00981 764 Gene3D - 8 505 - -
Cma08g00981 764 Gene3D von Willebrand factor, type A domain 124 398 IPR036465 -
Cma08g00981 764 SUPERFAMILY Zn-finger domain of Sec23/24 45 116 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Cma08g00981 764 Gene3D Severin 624 728 IPR029006 -
Cma08g00981 764 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 1 764 IPR037364 -
Cma08g00981 764 SUPERFAMILY beta-sandwich domain of Sec23/24 4 521 - -
Cma08g00981 764 Gene3D Sec23/Sec24 helical domain 519 761 - -
Cma08g00981 764 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 625 764 IPR036180 -
Cma08g00981 764 Pfam Sec23/Sec24 helical domain 522 620 IPR006900 GO:0006886|GO:0006888|GO:0030127
Cma08g00981 764 SUPERFAMILY Helical domain of Sec23/24 522 624 IPR036175 GO:0006886|GO:0006888|GO:0030127
Cma08g00981 764 CDD Sec23_C 614 734 IPR037550 GO:0030127|GO:0090114
Cma08g00981 764 Pfam Sec23/Sec24 zinc finger 54 92 IPR006895 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Cma08g00981 764 Gene3D - 51 110 - -
Cma08g00981 764 SUPERFAMILY vWA-like 123 391 IPR036465 -
Cma08g00981 764 Pfam Gelsolin repeat 636 722 IPR007123 -
Cma08g00981 764 Pfam Sec23/Sec24 beta-sandwich domain 400 508 IPR012990 -
Cma08g00981 764 Pfam Sec23/Sec24 trunk domain 124 390 IPR006896 GO:0006886|GO:0006888|GO:0030127
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g00981 K14006 SEC23; protein transport protein SEC23 - csv:101211017 1467.6
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g01605 Cma08g00981 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01871 Cma-Chr4:9519796 Cma08g00981 Cma-Chr8:6134535 1.33E-39 dispersed
Cma06g01605 Cma-Chr6:9993673 Cma08g00981 Cma-Chr8:6134535 0 dispersed
Cma08g00981 Cma-Chr8:6134535 Cma17g00189 Cma-Chr17:984350 0 dispersed
Cma08g00981 Cma-Chr8:6134535 Cma14g01528 Cma-Chr14:11560832 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1024 . . . . . . . . Cmo08g00949 . Cma06g01605 . Car06g01364 . Sed02g1076 Cpe08g00118 . Bhi01g01171 Tan10g1175 Cmetu06g0798 . Hepe05g1311 . Lcy11g1275 . . . . . . . Cone14ag0547 Cone15ag0568 Cone18ag0909 Cone11ag0596 . . . Cme06g00863 . Blo07g00065 . Bda13g00305 . . . . . . . Cma08g00981 . Car08g00861 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011146 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma08g00981 Cma_Chr08 FPKM 9.547249 9.322436 13.472573 14.361665 9.4331 9.22048 10.60409 17.790134 15.431554 17.858334