Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g01019 ATGTTAAGTTTGTTGTTTCATCGGTTCCATTTGGTTAGTATCAAAATGGGTAAGGAAAAGATTCACATCAACATCGTGGTTATTGGTCATGTCGACTCTGGTAAGTCGACTACCACTGGTCACCTTATCTACAAGCTTGGAGGAATTGACAAGCGTGTGATCGAGAGGTTCGAGAAGGAAGCTGCTGAGATGAACAAAAGGTCATTCAAGTATGCTTGGGTGCTCGACAAACTTAAGGCAGAGCGTGAACGTGGTATTACCATTGACATTGCTCTGTGGAAGTTTGAGACCACCAAGTATTACTGCACAGTCATTGATGCTCCCGGACATCGTGACTTTATCAAGAACATGATTACTGGAACCTCTCAGGCTGATTGTGCCGTCCTCATCATTGACTCGACCACTGGTGGTTTTGAAGCTGGTATTTCCAAGGATGGTCAAACCCGTGAGCACGCTCTCCTTGCTTTCACCCTTGGTGTCAAGCAAATGATCTGCTGCTGTAACAAGATGGATGCCACCACCCCCAAATATTCAAAGGCAAGGTATGATGAAATCGTGAAGGAAGTGTCTTCTTACCTCAAGAAGGTTGGATACAATCCAGACAAAATCCCCTTCGTGCCCATCTCCGGATTTGAGGGTGACAATATGATTGAGAGGTCCACCAACCTTGATTGGTACAAGGGACCAACACTTCTTGAGGCTCTTGACTTGATCCAGGAGCCCAAGAGGCCCTCAGACAAGCCCCTCCGTCTCCCACTTCAGGACGTGTACAAGATTGGTGGTATTGGAACTGTTCCTGTCGGTCGTGTTGAGACTGGTGTCCTCAAGCCTGGTATGGTTGTCACCTTTGGACCAACTGGACTGACCACTGAAGTTAAGTCCGTTGAAATGCACCACGAGTCTCTCCCAGAGGCCTTGCCTGGTGACAATGTTGGGTTCAATGTGAAGAACGTTGCAGTCAAGGATCTCAAGCGTGGTTTCGTTGCCTCAAACTCCAAGGATGACCCTGCCAAGGAGGCTGCCAACTTCACATCTCAGGTTATCATCATGAACCACCCTGGCCAAATCGGTAATGGTTATGCCCCAGTCCTTGATTGCCACACCTCCCACATTGCTGTTAAGTTCGCCGAGATCCTCACCAAGATCGATCGTCGATCTGGTAAGGAACTTGAGAAGGAGCCCAAGTTCTTGAAGAACGGTGATGCTGGTATGGTTAAGATGATTCCCACCAAGCCCATGGTTGTGGAGACCTTCTCTTCATACCCACCTTTGGGTCGTTTTGCTGTTCGTGACATGCGTCAAACCGTTGCTGTTGGTGTGATCAAGAGCGTGGAGAAGAAGGATCCAACTGGAGCCAAGGTGACCAAGTCCGCAGTGAAGAAGAAATAA 1389 48.16 MLSLLFHRFHLVSIKMGKEKIHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDLIQEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPTGLTTEVKSVEMHHESLPEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSSYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTGAKVTKSAVKKK 462
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6382979 6385395 + CmaCh08G010190.1 Cma08g01019 299714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g01019 462 TIGRFAM EF-1_alpha: translation elongation factor EF-1, subunit alpha 16 448 IPR004539 GO:0003746|GO:0005525|GO:0006414
Cma08g01019 462 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 76 91 IPR031157 -
Cma08g01019 462 CDD EF1_alpha_II 245 335 - -
Cma08g01019 462 Hamap Elongation factor Tu [tuf]. 17 447 IPR004539 GO:0003746|GO:0005525|GO:0006414
Cma08g01019 462 Gene3D - 10 243 IPR027417 -
Cma08g01019 462 Pfam Elongation factor Tu domain 2 263 328 IPR004161 GO:0005525
Cma08g01019 462 Pfam Elongation factor Tu C-terminal domain 337 444 IPR004160 -
Cma08g01019 462 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 341 444 IPR009001 -
Cma08g01019 462 SUPERFAMILY Translation proteins 246 336 IPR009000 -
Cma08g01019 462 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 20 245 IPR000795 GO:0003924|GO:0005525
Cma08g01019 462 CDD EF1_alpha 24 242 - -
Cma08g01019 462 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 18 264 IPR027417 -
Cma08g01019 462 PRINTS GTP-binding elongation factor signature 163 172 IPR000795 GO:0003924|GO:0005525
Cma08g01019 462 PRINTS GTP-binding elongation factor signature 24 37 IPR000795 GO:0003924|GO:0005525
Cma08g01019 462 PRINTS GTP-binding elongation factor signature 119 130 IPR000795 GO:0003924|GO:0005525
Cma08g01019 462 PRINTS GTP-binding elongation factor signature 103 113 IPR000795 GO:0003924|GO:0005525
Cma08g01019 462 PRINTS GTP-binding elongation factor signature 83 91 IPR000795 GO:0003924|GO:0005525
Cma08g01019 462 Pfam Elongation factor Tu GTP binding domain 22 236 IPR000795 GO:0003924|GO:0005525
Cma08g01019 462 PANTHER TRANSLATION FACTOR 16 461 - -
Cma08g01019 462 PANTHER ELONGATION FACTOR 1-ALPHA-LIKE 16 461 - -
Cma08g01019 462 Gene3D Translation factors 244 331 - -
Cma08g01019 462 Gene3D Translation factors 338 445 - -
Cma08g01019 462 CDD EF1_alpha_III 338 441 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00878 Cma-Chr2:5106889 Cma08g01019 Cma-Chr8:6382979 0 dispersed
Cma08g01019 Cma-Chr8:6382979 Cma17g00102 Cma-Chr17:495733 0 dispersed
Cma08g01019 Cma-Chr8:6382979 Cma20g00474 Cma-Chr20:2285299 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g01019 K03231 - csv:101215193 892.493