Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma08g01019 | ATGTTAAGTTTGTTGTTTCATCGGTTCCATTTGGTTAGTATCAAAATGGGTAAGGAAAAGATTCACATCAACATCGTGGTTATTGGTCATGTCGACTCTGGTAAGTCGACTACCACTGGTCACCTTATCTACAAGCTTGGAGGAATTGACAAGCGTGTGATCGAGAGGTTCGAGAAGGAAGCTGCTGAGATGAACAAAAGGTCATTCAAGTATGCTTGGGTGCTCGACAAACTTAAGGCAGAGCGTGAACGTGGTATTACCATTGACATTGCTCTGTGGAAGTTTGAGACCACCAAGTATTACTGCACAGTCATTGATGCTCCCGGACATCGTGACTTTATCAAGAACATGATTACTGGAACCTCTCAGGCTGATTGTGCCGTCCTCATCATTGACTCGACCACTGGTGGTTTTGAAGCTGGTATTTCCAAGGATGGTCAAACCCGTGAGCACGCTCTCCTTGCTTTCACCCTTGGTGTCAAGCAAATGATCTGCTGCTGTAACAAGATGGATGCCACCACCCCCAAATATTCAAAGGCAAGGTATGATGAAATCGTGAAGGAAGTGTCTTCTTACCTCAAGAAGGTTGGATACAATCCAGACAAAATCCCCTTCGTGCCCATCTCCGGATTTGAGGGTGACAATATGATTGAGAGGTCCACCAACCTTGATTGGTACAAGGGACCAACACTTCTTGAGGCTCTTGACTTGATCCAGGAGCCCAAGAGGCCCTCAGACAAGCCCCTCCGTCTCCCACTTCAGGACGTGTACAAGATTGGTGGTATTGGAACTGTTCCTGTCGGTCGTGTTGAGACTGGTGTCCTCAAGCCTGGTATGGTTGTCACCTTTGGACCAACTGGACTGACCACTGAAGTTAAGTCCGTTGAAATGCACCACGAGTCTCTCCCAGAGGCCTTGCCTGGTGACAATGTTGGGTTCAATGTGAAGAACGTTGCAGTCAAGGATCTCAAGCGTGGTTTCGTTGCCTCAAACTCCAAGGATGACCCTGCCAAGGAGGCTGCCAACTTCACATCTCAGGTTATCATCATGAACCACCCTGGCCAAATCGGTAATGGTTATGCCCCAGTCCTTGATTGCCACACCTCCCACATTGCTGTTAAGTTCGCCGAGATCCTCACCAAGATCGATCGTCGATCTGGTAAGGAACTTGAGAAGGAGCCCAAGTTCTTGAAGAACGGTGATGCTGGTATGGTTAAGATGATTCCCACCAAGCCCATGGTTGTGGAGACCTTCTCTTCATACCCACCTTTGGGTCGTTTTGCTGTTCGTGACATGCGTCAAACCGTTGCTGTTGGTGTGATCAAGAGCGTGGAGAAGAAGGATCCAACTGGAGCCAAGGTGACCAAGTCCGCAGTGAAGAAGAAATAA | 1389 | 48.16 | MLSLLFHRFHLVSIKMGKEKIHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDLIQEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPTGLTTEVKSVEMHHESLPEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSSYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTGAKVTKSAVKKK | 462 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 6382979 | 6385395 | + | CmaCh08G010190.1 | Cma08g01019 | 299714 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma08g01019 | 462 | TIGRFAM | EF-1_alpha: translation elongation factor EF-1, subunit alpha | 16 | 448 | IPR004539 | GO:0003746|GO:0005525|GO:0006414 | |
Cma08g01019 | 462 | ProSitePatterns | Translational (tr)-type guanine nucleotide-binding (G) domain signature. | 76 | 91 | IPR031157 | - | |
Cma08g01019 | 462 | CDD | EF1_alpha_II | 245 | 335 | - | - | |
Cma08g01019 | 462 | Hamap | Elongation factor Tu [tuf]. | 17 | 447 | IPR004539 | GO:0003746|GO:0005525|GO:0006414 | |
Cma08g01019 | 462 | Gene3D | - | 10 | 243 | IPR027417 | - | |
Cma08g01019 | 462 | Pfam | Elongation factor Tu domain 2 | 263 | 328 | IPR004161 | GO:0005525 | |
Cma08g01019 | 462 | Pfam | Elongation factor Tu C-terminal domain | 337 | 444 | IPR004160 | - | |
Cma08g01019 | 462 | SUPERFAMILY | EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain | 341 | 444 | IPR009001 | - | |
Cma08g01019 | 462 | SUPERFAMILY | Translation proteins | 246 | 336 | IPR009000 | - | |
Cma08g01019 | 462 | ProSiteProfiles | Translational (tr)-type guanine nucleotide-binding (G) domain profile. | 20 | 245 | IPR000795 | GO:0003924|GO:0005525 | |
Cma08g01019 | 462 | CDD | EF1_alpha | 24 | 242 | - | - | |
Cma08g01019 | 462 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 18 | 264 | IPR027417 | - | |
Cma08g01019 | 462 | PRINTS | GTP-binding elongation factor signature | 163 | 172 | IPR000795 | GO:0003924|GO:0005525 | |
Cma08g01019 | 462 | PRINTS | GTP-binding elongation factor signature | 24 | 37 | IPR000795 | GO:0003924|GO:0005525 | |
Cma08g01019 | 462 | PRINTS | GTP-binding elongation factor signature | 119 | 130 | IPR000795 | GO:0003924|GO:0005525 | |
Cma08g01019 | 462 | PRINTS | GTP-binding elongation factor signature | 103 | 113 | IPR000795 | GO:0003924|GO:0005525 | |
Cma08g01019 | 462 | PRINTS | GTP-binding elongation factor signature | 83 | 91 | IPR000795 | GO:0003924|GO:0005525 | |
Cma08g01019 | 462 | Pfam | Elongation factor Tu GTP binding domain | 22 | 236 | IPR000795 | GO:0003924|GO:0005525 | |
Cma08g01019 | 462 | PANTHER | TRANSLATION FACTOR | 16 | 461 | - | - | |
Cma08g01019 | 462 | PANTHER | ELONGATION FACTOR 1-ALPHA-LIKE | 16 | 461 | - | - | |
Cma08g01019 | 462 | Gene3D | Translation factors | 244 | 331 | - | - | |
Cma08g01019 | 462 | Gene3D | Translation factors | 338 | 445 | - | - | |
Cma08g01019 | 462 | CDD | EF1_alpha_III | 338 | 441 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma02g00878 | Cma-Chr2:5106889 | Cma08g01019 | Cma-Chr8:6382979 | 0 | dispersed | |
Cma08g01019 | Cma-Chr8:6382979 | Cma17g00102 | Cma-Chr17:495733 | 0 | dispersed | |
Cma08g01019 | Cma-Chr8:6382979 | Cma20g00474 | Cma-Chr20:2285299 | 0 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma08g01019 | K03231 | - | csv:101215193 | 892.493 |