Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g01021 ATGGCCACGCTTTTTCTCTCCCACTCCTTCCTCCTCCTTCTCATCGGAACCACCACCACCTCCGCCGTTTCCAGCGAGTTTTGGTGCGTGGCTCGCAGCGACGTCAGCTACGAGGCGCTACAGACGGCGCTGAACTACGCCTGCGCCACCGGCGCAGATTGCACTCCTATTCTGCCGAACGGCATGTGCTTCCTCCCCAACACCATCCAGGCCCACGCCTCCTACGCCTTCAACAGCTTCTTCCAGCGCAAGGCCATGGCTCCTGGCTCCTGTAACTTCGCCGGCTCCGCCACCATTGCCCACTCCAACCCCAGCTATGGATCTTGTGTTTATCCATCTTCTATCAGTACTGCAGGAGGAGCAATCACACCGAGCTTTCCAGGAAACACTAGCCCGACAATAACAACACCAACCACAACCACCACCACGCCAAGCTTCAACAACGGTGGTACTGATGACACGAATGGACTAAACCCAGTATACAACCCGACATCTACCAACTCGAAAGCCTCTTTGAGTCTTACGACCTCTAAACTTTGGATCATGATATTGTTGTCGATTGCTATCTCACTCGCTTTGTAA 582 54.3 MATLFLSHSFLLLLIGTTTTSAVSSEFWCVARSDVSYEALQTALNYACATGADCTPILPNGMCFLPNTIQAHASYAFNSFFQRKAMAPGSCNFAGSATIAHSNPSYGSCVYPSSISTAGGAITPSFPGNTSPTITTPTTTTTTPSFNNGGTDDTNGLNPVYNPTSTNSKASLSLTTSKLWIMILLSIAISLAL 193
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6389036 6391082 - CmaCh08G010210.1 Cma08g01021 299716

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g01021 193 Pfam X8 domain 28 98 IPR012946 -
Cma08g01021 193 SMART X8_cls 27 111 IPR012946 -
Cma08g01021 193 MobiDBLite consensus disorder prediction 126 154 - -
Cma08g01021 193 PANTHER CARBOHYDRATE-BINDING X8 DOMAIN SUPERFAMILY PROTEIN 10 177 - -
Cma08g01021 193 Gene3D - 20 118 - -
Cma08g01021 193 PANTHER BETA-1,3 GLUCANASE 10 177 IPR044788 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g01021 - - - cmax:111494211 325.865
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g01021 Cma-Chr8:6389036 Cma12g00099 Cma-Chr12:392552 6.40E-33 dispersed
Cma17g00098 Cma-Chr17:480734 Cma08g01021 Cma-Chr8:6389036 4.84E-76 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g906 . Blo12g00115 Bda03g01126 . . . Bma04g01055 . Cmo08g00991 . . . . . . . . . . . . . . . Cla06g00760 . Cec06g0822 . Clacu06g0812 Cmu06g0786 . . . . . . . Chy05g00560 . . . . . . . . . Sed04g2068 . . Cma08g01021 . Car08g00898 . . Cpe17g00255 Bhi12g01498 Tan06g2300 Cmetu05g0712 Lac12g2044 Hepe03g0359 . Lcy13g0466 . . . . . . . Lsi09g01139 . . Cme05g00718
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009076 1 1 1 1 0 1 1 1 1 1 2 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma08g01021 Cma_Chr08 FPKM 0.0 1.265288 0.47156 0.0 2.703033 1.735824 1.197676 0.122694 0.0 0.0