Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g01025 ATGAAGAACGAACCCGAACGCCCCGCCATAACAGTTCATCGGTTGATGGTAGAAGAGGAAAGAACTGAAGCAGGCTGGGATAGCAAGAAGGAGTTGACCATGACATCGACTTCTTCTGCTGGGGGGAAGCAACTGGCCGTGGTTGAAGCTCCTTCTAACTGTGTTCCATACCCGCCACCGCAAACGACATATGAGGATCTCATAGCCGATCCCAAGCTCTTTATGGCGTCCTTGGAGAAGCTCCATTCTATTATGGGAACCAAGTTCATGATCCCCATTATTGGTGGGAAAGAACTGGACCTGCATAGGCTTTTCGTGGAGGTCACTGCTCGTGGCGGCCTTGAGAAGGTTATAAGAGAGAGAAGATGGAAAGAAGTAACTTCAGTTTTCAAATTTCCTTCGACAGCCACCAATGCATCTTTTGTGCTGAGGAAGTATTATCTCTCATTAATTCATCATTTTGAACAGATTTACTTCTTTAAAGCCGTGGGATGGACACCAAAAGTTTCTGATTCCTCTCCAACCCCAAGTGCAGTGCCAATTCCGACACAAGGGATGGCGACCTCTATGTTGCCACCATCCAATCGGCCAGCACCCCAGCAGCAGCCACAGACCACTGCAACCGAACTTCCAGCAGTTGCTCCGAGTTCGGTACCACCAGCGGGAGGGTTTCCGGTGGTTGGAGTCATTGATGGAAAATTTGAAAGCGGATATCTCGTTACTGTTACTGTAGGAAATGAGAAGCTAAAAGGTGTGCTTTATATGACTCCTCCAGAGCAACCTGCTCAACAAGTGTTCCAGCCTGGTAGTGTTTTCACCAAAGATGGTACTACCTCCACTACACCAAATGCTCAGCGCCGTCGCCGGAGGAAGAAATCCGAGATCAAACGAAGGGATCCAGCTCATCCAAAGCCGAATAGAAGTGGCTACAATTTCTTCTTCGCCGAGCAGCATGCTAGACTCAAACCATTACACCCAGGGAAGGACAGGGAGATAAGCAGAATGATTGGTGAGCTTTGGAATAAACTTAATGAGTCTGAAAAAACAGTTTATCAGGAGAAAGCTATGAAAGATAAAGAACGATACAGAATTGAGATGGAGAATTACAGAGAGAAGCTGAGGACAGGCCAAATCATCAGTCATGCAGTGCCATTACAGCAGCTTCTTCCTGGGACAGACCTGAATATGGTCTATGCTGCTGACAAAAATGAAGAAACTGAAGGTGGCGAACTTCCTCATATGCAGTATAATGATACAATTTATGTTGAAGATAAGGAGGAGGAGGAAGAAGAGGAAGAGGAGGAGGACGACGACGAAGAAGAAGGTGCAGCAGCACCTCAAGGAGTTGGCAATGTGGATGTTAACGTCTTGGCTGAGGAGGAACACTGCGAGACTAGACCAGAACCAACAGCAACAGCCATTATACAAGAGAGTAGCACGGTCAAGGACGATAAGGAAGTTTTTGCCGGGCATTCAGTGGTAATGGTGGATGTGGCAAATGAAGAACCAGAACCAACAGCAACAGCCATTGTAGAAGATAAGGAAGTTTTCGCCGGGCATTCAGTGGTAATGGTGGATGTGGCAAATGAAGAACCAGAACCAACAGCAACAGCCATTGTAGAAGATAAGGAAGTTTTCGCCGGGGATTCGATGGTAATGGTGGTGGCTGCAAATGAAGAACCACAACCAACAGCTACAACCATTATAGAAGATAAGGAAGTTTTCGCCGGGGATACGATGGTAATGGTGGAGGCTGCAAATGAAGAACCACAACCAACAGCTACAACCATTATAGAAGATAAGGAAGTTTTTGCCGGGGATTCGATGGTAATGGTGGAGGCTGCAAATGAAAAACCACAACCAACAGCTACAACCATTATAGAAGATAAGGAAGTTTTCGCCGGAGATTCGATGGTAATGGTGGAGGCGGGAAATGAAGAACCAGAACCAACAACAGCAGCCATTATAGAAGATAAGGAAGTTTTCGCCGGGGATTCGGTGGTAATGATGGAGGTGGCAAATGAAGAACCAGAACCAACAACCGCAGCCATTGTAGAAGATAAGGGCGTTTTTGCCGGGGATTCGGTGGTAATGATGGAGGCGACAAATGAAGGAACAGAAGCAACAAGAACACAGACATTATAG 2145 46.62 MKNEPERPAITVHRLMVEEERTEAGWDSKKELTMTSTSSAGGKQLAVVEAPSNCVPYPPPQTTYEDLIADPKLFMASLEKLHSIMGTKFMIPIIGGKELDLHRLFVEVTARGGLEKVIRERRWKEVTSVFKFPSTATNASFVLRKYYLSLIHHFEQIYFFKAVGWTPKVSDSSPTPSAVPIPTQGMATSMLPPSNRPAPQQQPQTTATELPAVAPSSVPPAGGFPVVGVIDGKFESGYLVTVTVGNEKLKGVLYMTPPEQPAQQVFQPGSVFTKDGTTSTTPNAQRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKPLHPGKDREISRMIGELWNKLNESEKTVYQEKAMKDKERYRIEMENYREKLRTGQIISHAVPLQQLLPGTDLNMVYAADKNEETEGGELPHMQYNDTIYVEDKEEEEEEEEEEDDDEEEGAAAPQGVGNVDVNVLAEEEHCETRPEPTATAIIQESSTVKDDKEVFAGHSVVMVDVANEEPEPTATAIVEDKEVFAGHSVVMVDVANEEPEPTATAIVEDKEVFAGDSMVMVVAANEEPQPTATTIIEDKEVFAGDTMVMVEAANEEPQPTATTIIEDKEVFAGDSMVMVEAANEKPQPTATTIIEDKEVFAGDSMVMVEAGNEEPEPTTAAIIEDKEVFAGDSVVMMEVANEEPEPTTAAIVEDKGVFAGDSVVMMEATNEGTEATRTQTL 714
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6405677 6411251 - CmaCh08G010250.1 Cma08g01025 299720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g01025 714 SMART bright_3 69 160 IPR001606 GO:0003677
Cma08g01025 714 MobiDBLite consensus disorder prediction 172 215 - -
Cma08g01025 714 PANTHER HIGH MOBILITY GROUP B PROTEIN 15 21 437 - -
Cma08g01025 714 SMART hmgende2 302 371 IPR009071 -
Cma08g01025 714 MobiDBLite consensus disorder prediction 424 451 - -
Cma08g01025 714 SUPERFAMILY ARID-like 64 168 IPR036431 GO:0003677
Cma08g01025 714 Gene3D High mobility group box domain 287 382 IPR036910 -
Cma08g01025 714 Pfam ARID/BRIGHT DNA binding domain 72 155 IPR001606 GO:0003677
Cma08g01025 714 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 21 437 - -
Cma08g01025 714 CDD HMGB-UBF_HMG-box 303 367 - -
Cma08g01025 714 MobiDBLite consensus disorder prediction 266 309 - -
Cma08g01025 714 ProSiteProfiles ARID domain profile. 68 159 IPR001606 GO:0003677
Cma08g01025 714 SUPERFAMILY HMG-box 296 375 IPR036910 -
Cma08g01025 714 Gene3D - 61 163 IPR036431 GO:0003677
Cma08g01025 714 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 303 370 IPR009071 -
Cma08g01025 714 SMART ARID_2 65 155 - -
Cma08g01025 714 MobiDBLite consensus disorder prediction 172 212 - -
Cma08g01025 714 Coils Coil 352 372 - -
Cma08g01025 714 MobiDBLite consensus disorder prediction 266 283 - -
Cma08g01025 714 MobiDBLite consensus disorder prediction 424 443 - -
Cma08g01025 714 CDD ARID_HMGB9-like 70 155 IPR045303 GO:0003677
Cma08g01025 714 Pfam HMG (high mobility group) box 303 370 IPR009071 -
Cma08g01025 714 Coils Coil 421 442 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01993 Cma-Chr1:12805284 Cma08g01025 Cma-Chr8:6405677 1.37E-90 dispersed
Cma08g01025 Cma-Chr8:6405677 Cma17g00095 Cma-Chr17:465702 0 dispersed
Cma08g01025 Cma-Chr8:6405677 Cma09g00079 Cma-Chr9:350994 7.66E-88 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35546 PF01388 ARID 1.20E-16 CL0123 Cma TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g01025 - - cmax:111494342 1320.06