Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g01025 ATGAAGAACGAACCCGAACGCCCCGCCATAACAGTTCATCGGTTGATGGTAGAAGAGGAAAGAACTGAAGCAGGCTGGGATAGCAAGAAGGAGTTGACCATGACATCGACTTCTTCTGCTGGGGGGAAGCAACTGGCCGTGGTTGAAGCTCCTTCTAACTGTGTTCCATACCCGCCACCGCAAACGACATATGAGGATCTCATAGCCGATCCCAAGCTCTTTATGGCGTCCTTGGAGAAGCTCCATTCTATTATGGGAACCAAGTTCATGATCCCCATTATTGGTGGGAAAGAACTGGACCTGCATAGGCTTTTCGTGGAGGTCACTGCTCGTGGCGGCCTTGAGAAGGTTATAAGAGAGAGAAGATGGAAAGAAGTAACTTCAGTTTTCAAATTTCCTTCGACAGCCACCAATGCATCTTTTGTGCTGAGGAAGTATTATCTCTCATTAATTCATCATTTTGAACAGATTTACTTCTTTAAAGCCGTGGGATGGACACCAAAAGTTTCTGATTCCTCTCCAACCCCAAGTGCAGTGCCAATTCCGACACAAGGGATGGCGACCTCTATGTTGCCACCATCCAATCGGCCAGCACCCCAGCAGCAGCCACAGACCACTGCAACCGAACTTCCAGCAGTTGCTCCGAGTTCGGTACCACCAGCGGGAGGGTTTCCGGTGGTTGGAGTCATTGATGGAAAATTTGAAAGCGGATATCTCGTTACTGTTACTGTAGGAAATGAGAAGCTAAAAGGTGTGCTTTATATGACTCCTCCAGAGCAACCTGCTCAACAAGTGTTCCAGCCTGGTAGTGTTTTCACCAAAGATGGTACTACCTCCACTACACCAAATGCTCAGCGCCGTCGCCGGAGGAAGAAATCCGAGATCAAACGAAGGGATCCAGCTCATCCAAAGCCGAATAGAAGTGGCTACAATTTCTTCTTCGCCGAGCAGCATGCTAGACTCAAACCATTACACCCAGGGAAGGACAGGGAGATAAGCAGAATGATTGGTGAGCTTTGGAATAAACTTAATGAGTCTGAAAAAACAGTTTATCAGGAGAAAGCTATGAAAGATAAAGAACGATACAGAATTGAGATGGAGAATTACAGAGAGAAGCTGAGGACAGGCCAAATCATCAGTCATGCAGTGCCATTACAGCAGCTTCTTCCTGGGACAGACCTGAATATGGTCTATGCTGCTGACAAAAATGAAGAAACTGAAGGTGGCGAACTTCCTCATATGCAGTATAATGATACAATTTATGTTGAAGATAAGGAGGAGGAGGAAGAAGAGGAAGAGGAGGAGGACGACGACGAAGAAGAAGGTGCAGCAGCACCTCAAGGAGTTGGCAATGTGGATGTTAACGTCTTGGCTGAGGAGGAACACTGCGAGACTAGACCAGAACCAACAGCAACAGCCATTATACAAGAGAGTAGCACGGTCAAGGACGATAAGGAAGTTTTTGCCGGGCATTCAGTGGTAATGGTGGATGTGGCAAATGAAGAACCAGAACCAACAGCAACAGCCATTGTAGAAGATAAGGAAGTTTTCGCCGGGCATTCAGTGGTAATGGTGGATGTGGCAAATGAAGAACCAGAACCAACAGCAACAGCCATTGTAGAAGATAAGGAAGTTTTCGCCGGGGATTCGATGGTAATGGTGGTGGCTGCAAATGAAGAACCACAACCAACAGCTACAACCATTATAGAAGATAAGGAAGTTTTCGCCGGGGATACGATGGTAATGGTGGAGGCTGCAAATGAAGAACCACAACCAACAGCTACAACCATTATAGAAGATAAGGAAGTTTTTGCCGGGGATTCGATGGTAATGGTGGAGGCTGCAAATGAAAAACCACAACCAACAGCTACAACCATTATAGAAGATAAGGAAGTTTTCGCCGGAGATTCGATGGTAATGGTGGAGGCGGGAAATGAAGAACCAGAACCAACAACAGCAGCCATTATAGAAGATAAGGAAGTTTTCGCCGGGGATTCGGTGGTAATGATGGAGGTGGCAAATGAAGAACCAGAACCAACAACCGCAGCCATTGTAGAAGATAAGGGCGTTTTTGCCGGGGATTCGGTGGTAATGATGGAGGCGACAAATGAAGGAACAGAAGCAACAAGAACACAGACATTATAG 2145 46.62 MKNEPERPAITVHRLMVEEERTEAGWDSKKELTMTSTSSAGGKQLAVVEAPSNCVPYPPPQTTYEDLIADPKLFMASLEKLHSIMGTKFMIPIIGGKELDLHRLFVEVTARGGLEKVIRERRWKEVTSVFKFPSTATNASFVLRKYYLSLIHHFEQIYFFKAVGWTPKVSDSSPTPSAVPIPTQGMATSMLPPSNRPAPQQQPQTTATELPAVAPSSVPPAGGFPVVGVIDGKFESGYLVTVTVGNEKLKGVLYMTPPEQPAQQVFQPGSVFTKDGTTSTTPNAQRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKPLHPGKDREISRMIGELWNKLNESEKTVYQEKAMKDKERYRIEMENYREKLRTGQIISHAVPLQQLLPGTDLNMVYAADKNEETEGGELPHMQYNDTIYVEDKEEEEEEEEEEDDDEEEGAAAPQGVGNVDVNVLAEEEHCETRPEPTATAIIQESSTVKDDKEVFAGHSVVMVDVANEEPEPTATAIVEDKEVFAGHSVVMVDVANEEPEPTATAIVEDKEVFAGDSMVMVVAANEEPQPTATTIIEDKEVFAGDTMVMVEAANEEPQPTATTIIEDKEVFAGDSMVMVEAANEKPQPTATTIIEDKEVFAGDSMVMVEAGNEEPEPTTAAIIEDKEVFAGDSVVMMEVANEEPEPTTAAIVEDKGVFAGDSVVMMEATNEGTEATRTQTL 714
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6405677 6411251 - CmaCh08G010250.1 Cma08g01025 299720

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g01025 714 SMART bright_3 69 160 IPR001606 GO:0003677
Cma08g01025 714 MobiDBLite consensus disorder prediction 172 215 - -
Cma08g01025 714 PANTHER HIGH MOBILITY GROUP B PROTEIN 15 21 437 - -
Cma08g01025 714 SMART hmgende2 302 371 IPR009071 -
Cma08g01025 714 MobiDBLite consensus disorder prediction 424 451 - -
Cma08g01025 714 SUPERFAMILY ARID-like 64 168 IPR036431 GO:0003677
Cma08g01025 714 Gene3D High mobility group box domain 287 382 IPR036910 -
Cma08g01025 714 Pfam ARID/BRIGHT DNA binding domain 72 155 IPR001606 GO:0003677
Cma08g01025 714 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 21 437 - -
Cma08g01025 714 CDD HMGB-UBF_HMG-box 303 367 - -
Cma08g01025 714 MobiDBLite consensus disorder prediction 266 309 - -
Cma08g01025 714 ProSiteProfiles ARID domain profile. 68 159 IPR001606 GO:0003677
Cma08g01025 714 SUPERFAMILY HMG-box 296 375 IPR036910 -
Cma08g01025 714 Gene3D - 61 163 IPR036431 GO:0003677
Cma08g01025 714 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 303 370 IPR009071 -
Cma08g01025 714 SMART ARID_2 65 155 - -
Cma08g01025 714 MobiDBLite consensus disorder prediction 172 212 - -
Cma08g01025 714 Coils Coil 352 372 - -
Cma08g01025 714 MobiDBLite consensus disorder prediction 266 283 - -
Cma08g01025 714 MobiDBLite consensus disorder prediction 424 443 - -
Cma08g01025 714 CDD ARID_HMGB9-like 70 155 IPR045303 GO:0003677
Cma08g01025 714 Pfam HMG (high mobility group) box 303 370 IPR009071 -
Cma08g01025 714 Coils Coil 421 442 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g01025 - - - cmax:111494342 1320.06
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01993 Cma-Chr1:12805284 Cma08g01025 Cma-Chr8:6405677 1.37E-90 dispersed
Cma08g01025 Cma-Chr8:6405677 Cma17g00095 Cma-Chr17:465702 0 dispersed
Cma08g01025 Cma-Chr8:6405677 Cma09g00079 Cma-Chr9:350994 7.66E-88 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g902 Blo01g00329 . . Bda08g00034 Bpe04g01069 . Bma04g01053 Bma05g01290 Cmo08g00997 . . . . . . . . . . . . . . . Cla06g00753 Cam06g0805 Cec06g0816 . Clacu06g0808 Cmu06g0781 Cre06g1559 . . Cone7ag0393 . . . Chy05g00556 . . . . . Bpe05g01140 . . . Sed09g0187 . . Cma08g01025 . Car08g00902 . . Cpe17g00251 Bhi12g01502 Tan06g2304 Cmetu04g1927 Lac12g2048 Hepe03g0356 . Lcy13g0460 . . . . . . . Lsi09g01146 . . Cme05g00713
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma17g00095 . 1 358 ARID Transcription Factor Family AT1G04880 56.8 2.5e-106 383.3
Cma08g01025 . 60 399 ARID Transcription Factor Family AT1G04880 60.3 1.2e-105 380.9
Cma01g02043 . 141 420 ARID Transcription Factor Family AT1G20910 67.5 2.2e-103 373.2
Cma16g01291 . 163 432 ARID Transcription Factor Family AT1G20910 60.3 2.7e-88 323.2
Cma09g00079 CST 16 315 ARID Transcription Factor Family AT1G76110 67.0 1.3e-112 403.7
Cma01g01993 CST 16 312 ARID Transcription Factor Family AT1G76110 65.3 3.6e-110 395.6
Cma01g02043 . 140 450 ARID Transcription Factor Family AT1G76510 72.8 1.6e-126 450.3
Cma16g01291 . 154 462 ARID Transcription Factor Family AT1G76510 61.6 8.2e-107 384.8
Cma01g00017 . 1 785 ARID Transcription Factor Family AT3G43240 58.4 6.1e-259 891.0
Cma14g01215 . 1 782 ARID Transcription Factor Family AT3G43240 57.9 6.1e-259 891.0
Cma17g00656 . 2 771 ARID Transcription Factor Family AT3G43240 56.9 1.3e-253 873.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004427 1 1 1 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 6 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35546 PF01388 ARID 1.20E-16 CL0123 Cma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma08g01025 Cma_Chr08 FPKM 0.160373 0.209891 0.206416 0.361786 2.667036 2.578118 3.132805 0.975103 0.96022 0.850949