Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma08g01025 | ATGAAGAACGAACCCGAACGCCCCGCCATAACAGTTCATCGGTTGATGGTAGAAGAGGAAAGAACTGAAGCAGGCTGGGATAGCAAGAAGGAGTTGACCATGACATCGACTTCTTCTGCTGGGGGGAAGCAACTGGCCGTGGTTGAAGCTCCTTCTAACTGTGTTCCATACCCGCCACCGCAAACGACATATGAGGATCTCATAGCCGATCCCAAGCTCTTTATGGCGTCCTTGGAGAAGCTCCATTCTATTATGGGAACCAAGTTCATGATCCCCATTATTGGTGGGAAAGAACTGGACCTGCATAGGCTTTTCGTGGAGGTCACTGCTCGTGGCGGCCTTGAGAAGGTTATAAGAGAGAGAAGATGGAAAGAAGTAACTTCAGTTTTCAAATTTCCTTCGACAGCCACCAATGCATCTTTTGTGCTGAGGAAGTATTATCTCTCATTAATTCATCATTTTGAACAGATTTACTTCTTTAAAGCCGTGGGATGGACACCAAAAGTTTCTGATTCCTCTCCAACCCCAAGTGCAGTGCCAATTCCGACACAAGGGATGGCGACCTCTATGTTGCCACCATCCAATCGGCCAGCACCCCAGCAGCAGCCACAGACCACTGCAACCGAACTTCCAGCAGTTGCTCCGAGTTCGGTACCACCAGCGGGAGGGTTTCCGGTGGTTGGAGTCATTGATGGAAAATTTGAAAGCGGATATCTCGTTACTGTTACTGTAGGAAATGAGAAGCTAAAAGGTGTGCTTTATATGACTCCTCCAGAGCAACCTGCTCAACAAGTGTTCCAGCCTGGTAGTGTTTTCACCAAAGATGGTACTACCTCCACTACACCAAATGCTCAGCGCCGTCGCCGGAGGAAGAAATCCGAGATCAAACGAAGGGATCCAGCTCATCCAAAGCCGAATAGAAGTGGCTACAATTTCTTCTTCGCCGAGCAGCATGCTAGACTCAAACCATTACACCCAGGGAAGGACAGGGAGATAAGCAGAATGATTGGTGAGCTTTGGAATAAACTTAATGAGTCTGAAAAAACAGTTTATCAGGAGAAAGCTATGAAAGATAAAGAACGATACAGAATTGAGATGGAGAATTACAGAGAGAAGCTGAGGACAGGCCAAATCATCAGTCATGCAGTGCCATTACAGCAGCTTCTTCCTGGGACAGACCTGAATATGGTCTATGCTGCTGACAAAAATGAAGAAACTGAAGGTGGCGAACTTCCTCATATGCAGTATAATGATACAATTTATGTTGAAGATAAGGAGGAGGAGGAAGAAGAGGAAGAGGAGGAGGACGACGACGAAGAAGAAGGTGCAGCAGCACCTCAAGGAGTTGGCAATGTGGATGTTAACGTCTTGGCTGAGGAGGAACACTGCGAGACTAGACCAGAACCAACAGCAACAGCCATTATACAAGAGAGTAGCACGGTCAAGGACGATAAGGAAGTTTTTGCCGGGCATTCAGTGGTAATGGTGGATGTGGCAAATGAAGAACCAGAACCAACAGCAACAGCCATTGTAGAAGATAAGGAAGTTTTCGCCGGGCATTCAGTGGTAATGGTGGATGTGGCAAATGAAGAACCAGAACCAACAGCAACAGCCATTGTAGAAGATAAGGAAGTTTTCGCCGGGGATTCGATGGTAATGGTGGTGGCTGCAAATGAAGAACCACAACCAACAGCTACAACCATTATAGAAGATAAGGAAGTTTTCGCCGGGGATACGATGGTAATGGTGGAGGCTGCAAATGAAGAACCACAACCAACAGCTACAACCATTATAGAAGATAAGGAAGTTTTTGCCGGGGATTCGATGGTAATGGTGGAGGCTGCAAATGAAAAACCACAACCAACAGCTACAACCATTATAGAAGATAAGGAAGTTTTCGCCGGAGATTCGATGGTAATGGTGGAGGCGGGAAATGAAGAACCAGAACCAACAACAGCAGCCATTATAGAAGATAAGGAAGTTTTCGCCGGGGATTCGGTGGTAATGATGGAGGTGGCAAATGAAGAACCAGAACCAACAACCGCAGCCATTGTAGAAGATAAGGGCGTTTTTGCCGGGGATTCGGTGGTAATGATGGAGGCGACAAATGAAGGAACAGAAGCAACAAGAACACAGACATTATAG | 2145 | 46.62 | MKNEPERPAITVHRLMVEEERTEAGWDSKKELTMTSTSSAGGKQLAVVEAPSNCVPYPPPQTTYEDLIADPKLFMASLEKLHSIMGTKFMIPIIGGKELDLHRLFVEVTARGGLEKVIRERRWKEVTSVFKFPSTATNASFVLRKYYLSLIHHFEQIYFFKAVGWTPKVSDSSPTPSAVPIPTQGMATSMLPPSNRPAPQQQPQTTATELPAVAPSSVPPAGGFPVVGVIDGKFESGYLVTVTVGNEKLKGVLYMTPPEQPAQQVFQPGSVFTKDGTTSTTPNAQRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKPLHPGKDREISRMIGELWNKLNESEKTVYQEKAMKDKERYRIEMENYREKLRTGQIISHAVPLQQLLPGTDLNMVYAADKNEETEGGELPHMQYNDTIYVEDKEEEEEEEEEEDDDEEEGAAAPQGVGNVDVNVLAEEEHCETRPEPTATAIIQESSTVKDDKEVFAGHSVVMVDVANEEPEPTATAIVEDKEVFAGHSVVMVDVANEEPEPTATAIVEDKEVFAGDSMVMVVAANEEPQPTATTIIEDKEVFAGDTMVMVEAANEEPQPTATTIIEDKEVFAGDSMVMVEAANEKPQPTATTIIEDKEVFAGDSMVMVEAGNEEPEPTTAAIIEDKEVFAGDSVVMMEVANEEPEPTTAAIVEDKGVFAGDSVVMMEATNEGTEATRTQTL | 714 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 6405677 | 6411251 | - | CmaCh08G010250.1 | Cma08g01025 | 299720 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma08g01025 | 714 | SMART | bright_3 | 69 | 160 | IPR001606 | GO:0003677 | |
Cma08g01025 | 714 | MobiDBLite | consensus disorder prediction | 172 | 215 | - | - | |
Cma08g01025 | 714 | PANTHER | HIGH MOBILITY GROUP B PROTEIN 15 | 21 | 437 | - | - | |
Cma08g01025 | 714 | SMART | hmgende2 | 302 | 371 | IPR009071 | - | |
Cma08g01025 | 714 | MobiDBLite | consensus disorder prediction | 424 | 451 | - | - | |
Cma08g01025 | 714 | SUPERFAMILY | ARID-like | 64 | 168 | IPR036431 | GO:0003677 | |
Cma08g01025 | 714 | Gene3D | High mobility group box domain | 287 | 382 | IPR036910 | - | |
Cma08g01025 | 714 | Pfam | ARID/BRIGHT DNA binding domain | 72 | 155 | IPR001606 | GO:0003677 | |
Cma08g01025 | 714 | PANTHER | HIGH MOBILITY GROUP B PROTEIN 9 | 21 | 437 | - | - | |
Cma08g01025 | 714 | CDD | HMGB-UBF_HMG-box | 303 | 367 | - | - | |
Cma08g01025 | 714 | MobiDBLite | consensus disorder prediction | 266 | 309 | - | - | |
Cma08g01025 | 714 | ProSiteProfiles | ARID domain profile. | 68 | 159 | IPR001606 | GO:0003677 | |
Cma08g01025 | 714 | SUPERFAMILY | HMG-box | 296 | 375 | IPR036910 | - | |
Cma08g01025 | 714 | Gene3D | - | 61 | 163 | IPR036431 | GO:0003677 | |
Cma08g01025 | 714 | ProSiteProfiles | HMG boxes A and B DNA-binding domains profile. | 303 | 370 | IPR009071 | - | |
Cma08g01025 | 714 | SMART | ARID_2 | 65 | 155 | - | - | |
Cma08g01025 | 714 | MobiDBLite | consensus disorder prediction | 172 | 212 | - | - | |
Cma08g01025 | 714 | Coils | Coil | 352 | 372 | - | - | |
Cma08g01025 | 714 | MobiDBLite | consensus disorder prediction | 266 | 283 | - | - | |
Cma08g01025 | 714 | MobiDBLite | consensus disorder prediction | 424 | 443 | - | - | |
Cma08g01025 | 714 | CDD | ARID_HMGB9-like | 70 | 155 | IPR045303 | GO:0003677 | |
Cma08g01025 | 714 | Pfam | HMG (high mobility group) box | 303 | 370 | IPR009071 | - | |
Cma08g01025 | 714 | Coils | Coil | 421 | 442 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma01g01993 | Cma-Chr1:12805284 | Cma08g01025 | Cma-Chr8:6405677 | 1.37E-90 | dispersed | |
Cma08g01025 | Cma-Chr8:6405677 | Cma17g00095 | Cma-Chr17:465702 | 0 | dispersed | |
Cma08g01025 | Cma-Chr8:6405677 | Cma09g00079 | Cma-Chr9:350994 | 7.66E-88 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35546 | PF01388 | ARID | 1.20E-16 | CL0123 | Cma | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma08g01025 | - | - | cmax:111494342 | 1320.06 |