Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g01026 ATGAAACTGAACCGCCTCTGTTTCCTTAAACCGGCGGACTTCGTCCAGCCACTTGATCCTGAAGAACTTCAAAAACCCACCAACAGCAATGAACAACAACAAAACAAACAGCATCGCAATCGAGATTGTTGGTCTCAATTTCAAGCCTTCCTCCGAGATTCCTTCTTCAAATTCCAAGACCTCAAAAGGGCTACTTCCTGTTGCTACGGCGGATCCACACAGTTGACGCCGTCCGTCGGTGGCGGCGGCGTGTTTCACGACACCGATGGGGTGCAGCTTTCTGAGAAAGTCGGCGGTGACAACCCCAGAATCTTCAGCTTTGCAGAGCTCTATATTGGAACCAAAGGGTTCTGTGCAGAGGAAATTCTTGGCAGTGGGGGATTTGGGAAAGTTTACAGAGCGAATTTGCCTAGTGATGGAACTCTGGTGGCTGTGAAATGTTTGGCTGAAAAAGGGGAGAAGTTTGAGAAGACGTTTGTGGCGGAGCTGGTGGCGGTGGCCCATCTCCGGCATCGGAATCTTGTTCGGCTTCGGGGGTGGTGTGTTCATGATGACCAGCTATTTCTTGTTTATGATTATATGCCTAACCGGAGCTTAGACAGAGCACTTTTCCGGCGGCCGGAGAACGGCGGGACGGATCTGAGCTGGAAACAGAGAGTGAAAATCGTGAGTGGCTTGGCTGCTGCTCTGTTCTATCTGCATGAGAAATTAGAGACGCAGATCATTCATAGAGATGTTAAAACCAGCAACGTGATGCTTGATTCCAATTATAACGCTAGGCTTGGTGATTTCGGATTGGCAAGGTGGTTAGAACATGAACTTGAGTACCAATACAGGATGCCGTCGATGGGCCACCACCAGTTCCGACTGGTGGAAACCACTAAAATAGGCGGCACAATTGGGTATCTCCCACCGGAGAGTTTCCAGAAAAGAAGCATTGCCACTGCAAAATCTGATGTTTTCAGCTTTGGAATTGTGGTTCTTGAGGTGATCTCTGGGCGGCGGGCAGTGGACCTGACATGTCCTGATGATCAGATTATCTTGCTCGATTGGATTCGAAAGCTCTCCGATGACGGTACGCTGCTGCTCGCCGGTGATAGCCGGCTGGTAGATGGGTCTTATAACCTGATTGAAATGGAGCGTTTGATCCATTTGGGTCTTCTCTGTACACTCCATAGCCCACAGTATAGGCCAAGTATGAAATGGGTTGTGGAAGCATTTTCCGGTGGTCTGATGGGGAATTTGCCGGCTCTGCCATCGTTTCAGTCTCATCCTCAGTACATTTCTCTGTCTTCCCCCACCGGTGGCAGTACAACTAAAAGCACTAGCAGCAGCATAACCACGGCGACAAGATCAGACACAACAACAATCACAGTTAATTGCTCAGATTTTGCATCAGCCAATGGAGAAACCATATATATGACTGCTGAGAATGGCATCAATAACAATTATACCAACAATTCTGATAGGTTTCTTGACAGATCAAAAACCATTCAAATGATTGAAACGCCAAGAGAAATATCATTCAAGGAGATTATTTCAGCCACCAATAACTTCTCCGATTCGCAGCGGGTGGCCGAGCTCGATTTCGGAACTGCCTACCATGGCTTCCTTGACAGCAGCCACCATGTTCTAGTGAAGCGGCTTGGAATGAAAACTTGTCCTGCGCTAAGGGAGAGATTCTCGAATGAACTCCTAAACTTAGGCCGGCTTCGCCATAGAAACTTGATTCAGCTTCGTGGGTGGTGCACAGAACAAGGGGAGATGCTTGTGGTGTATGATTATTCAGCTGACCGTCTCTTGAGCCACCTGCTTTTCCACCATGACAAAGGAGCTTTACAATGGTGCCATAGATACAACATTATCAAATCTCTGGCTTCTGCTATTCTGTATCTTCATGAGGAATGGGATGAACAAGTCATCCACAGGAACATAACTTCATCAGCTGTTATACTAGATCCTGATCTTAACCCAAGGTTGAGTTCTTTCGCTCTTGCAGAATTCTTAACAAGAAACGAGCACGGCAATCATCACGTAACCATAGATAAAAGCAAATCAGCTCACGGGATTTTCGGGTACATGTCGCCCGAGTATCTAGACTCTGGGGATGCTGTTGCGACAGCGGATATATACAGCTTTGGTGTAGTGGTGCTCGAGGTGGTAACGGGACAAATGGCCGTTGATTTTCGTCGTCCAGAGGTATTGCTAGTGTGGAAGGTCCATGAATTCCTCTCCCGGAAAAGACCACTGGAAGAATTAGCTGATATAAGACTGGATGGAGAATACAACCACAAAGAACTGATGAGACTGCTGAGATTAGGAATCGCTTGTACTCATTCAAACCCAGATTTGAGACCAAAAATGAGGCAGATAGTTAAAATACTAGATGGAAATGACCAATGCTTCTCTAAAGAACAAAGAATGGAAAGCATAGAAGGTTGGAAACAGAGAAATGCAACTTCTCTGTCACTGGTTAAGAGGATCCAAGCTCTGGGAATACAGTGA 2505 46.79 MKLNRLCFLKPADFVQPLDPEELQKPTNSNEQQQNKQHRNRDCWSQFQAFLRDSFFKFQDLKRATSCCYGGSTQLTPSVGGGGVFHDTDGVQLSEKVGGDNPRIFSFAELYIGTKGFCAEEILGSGGFGKVYRANLPSDGTLVAVKCLAEKGEKFEKTFVAELVAVAHLRHRNLVRLRGWCVHDDQLFLVYDYMPNRSLDRALFRRPENGGTDLSWKQRVKIVSGLAAALFYLHEKLETQIIHRDVKTSNVMLDSNYNARLGDFGLARWLEHELEYQYRMPSMGHHQFRLVETTKIGGTIGYLPPESFQKRSIATAKSDVFSFGIVVLEVISGRRAVDLTCPDDQIILLDWIRKLSDDGTLLLAGDSRLVDGSYNLIEMERLIHLGLLCTLHSPQYRPSMKWVVEAFSGGLMGNLPALPSFQSHPQYISLSSPTGGSTTKSTSSSITTATRSDTTTITVNCSDFASANGETIYMTAENGINNNYTNNSDRFLDRSKTIQMIETPREISFKEIISATNNFSDSQRVAELDFGTAYHGFLDSSHHVLVKRLGMKTCPALRERFSNELLNLGRLRHRNLIQLRGWCTEQGEMLVVYDYSADRLLSHLLFHHDKGALQWCHRYNIIKSLASAILYLHEEWDEQVIHRNITSSAVILDPDLNPRLSSFALAEFLTRNEHGNHHVTIDKSKSAHGIFGYMSPEYLDSGDAVATADIYSFGVVVLEVVTGQMAVDFRRPEVLLVWKVHEFLSRKRPLEELADIRLDGEYNHKELMRLLRLGIACTHSNPDLRPKMRQIVKILDGNDQCFSKEQRMESIEGWKQRNATSLSLVKRIQALGIQ 834
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6416449 6418953 + CmaCh08G010260.1 Cma08g01026 299721

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g01026 834 Gene3D Transferase(Phosphotransferase) domain 1 194 410 - -
Cma08g01026 834 SMART serkin_6 117 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma08g01026 834 Pfam Protein kinase domain 120 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma08g01026 834 MobiDBLite consensus disorder prediction 22 39 - -
Cma08g01026 834 Gene3D Phosphorylase Kinase; domain 1 481 595 - -
Cma08g01026 834 Gene3D Phosphorylase Kinase; domain 1 89 193 - -
Cma08g01026 834 ProSitePatterns Serine/Threonine protein kinases active-site signature. 241 253 IPR008271 GO:0004672|GO:0006468
Cma08g01026 834 SUPERFAMILY Protein kinase-like (PK-like) 495 795 IPR011009 -
Cma08g01026 834 PANTHER - 3 833 - -
Cma08g01026 834 MobiDBLite consensus disorder prediction 19 39 - -
Cma08g01026 834 ProSitePatterns Protein kinases ATP-binding region signature. 123 146 IPR017441 GO:0005524
Cma08g01026 834 CDD STKc_IRAK 530 797 - -
Cma08g01026 834 Gene3D Transferase(Phosphotransferase) domain 1 598 818 - -
Cma08g01026 834 ProSiteProfiles Protein kinase domain profile. 519 802 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma08g01026 834 ProSiteProfiles Protein kinase domain profile. 117 427 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma08g01026 834 PANTHER RECEPTOR LIKE PROTEIN KINASE S.2 3 833 - -
Cma08g01026 834 Pfam Protein tyrosine and serine/threonine kinase 526 795 IPR001245 GO:0004672|GO:0006468
Cma08g01026 834 SUPERFAMILY Protein kinase-like (PK-like) 101 417 IPR011009 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g01026 - - - cmos:111464327 1599.72
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma08g01026 Cma17g00103 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g01026 Cma-Chr8:6416449 Cma14g00201 Cma-Chr14:864110 5.18E-55 dispersed
Cma17g00103 Cma-Chr17:503276 Cma08g01026 Cma-Chr8:6416449 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g896 . . . Bda08g00033 . . . . Cmo08g00998 Cmo17g00106 . . . . . . . . . . . . . . Cla06g00751 . . . . . . . . . . . . Chy05g00555 . . . . . . . . . . . . Cma08g01026 Cma17g00103 Car08g00903 Car17g00092 Cpe12g00092 Cpe17g00250 Bhi12g01503 . . . . . Lcy13g0459 . . . . . . . Lsi09g01148 . . Cme05g00712
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010661 1 1 0 0 0 1 2 0 1 1 1 1 2 1 0 2 1 1 2 1 1 1 1 2 0 1 1 1 1 1 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68768 PF07714 PK_Tyr_Ser-Thr 6.10E-27 CL0016 Cma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma08g01026 Cma_Chr08 FPKM 8.578842 8.472916 0.782327 0.890099 1.713444 1.250314 1.742887 0.451791 0.534291 0.602874