Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g01029 ATGGGGAAGTACATGAGGAAAACCAAGTCATTAGGCAAAGTTGCAGTCATGGAGGTTTCGCAGACCTCTTTTGGGGTTTTGACTAGGGCTAAGGCTCTTGCCTTGCGTCGCCTCCAGCAATCTCCGACGCCGTCCCCGTCTCTGCCGTCTCCGGTTCCCTCTGGTTCTTATCTCCAGCTTCGGAGCCGGCGGCTTGTGTTTTCCGGTCATGAAACGAAGAGGCAGAAGCAAAACCCTAAAGAAGACGGCTGCACGAGAAACCCTAGCCCTAGGGTGAGTTCTAGTTTGAGGCCGGCCATGCCGGAAAGGTCTGTCACGCTTGGCCATGTTAATGATGAAGGGGATAATACGGCGGAGGAGGCAGAGAAATCCGTTGCGAAAATTGCTGAAGTTCTTGTGAGTGGGAGCAAGAATGAGATTGTTGATTTGGGTATCGAAGAGGCCTCGTTTGGAGAAATTTTTTTGGATTGTGAAAGTAGAGAGAGGAGTACTAGGGAATCAACACCCTCTAGTTTGATAAGGAATCCCGACATTATCCGAACACCCAGTTCGACTATCAGGCCAACATTGAGCGCAATCGAAACTAACCATAGAAATCGTTACTCATCGAATCGACACATGCCGACAGCTCAGGAAATGGACGAGTTTTTTGCTCTTGCTGAAGAAAAACAGCAACGTTACTTCATTGAGAAGTACAACTTCGATCCCGTTAAAGATATGCCACTTCCAGGCTGCTACGAATGGGAGAAGTTGCAACCATAG 762 48.69 MGKYMRKTKSLGKVAVMEVSQTSFGVLTRAKALALRRLQQSPTPSPSLPSPVPSGSYLQLRSRRLVFSGHETKRQKQNPKEDGCTRNPSPRVSSSLRPAMPERSVTLGHVNDEGDNTAEEAEKSVAKIAEVLVSGSKNEIVDLGIEEASFGEIFLDCESRERSTRESTPSSLIRNPDIIRTPSSTIRPTLSAIETNHRNRYSSNRHMPTAQEMDEFFALAEEKQQRYFIEKYNFDPVKDMPLPGCYEWEKLQP 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6435483 6437376 - CmaCh08G010290.1 Cma08g01029 299724

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g01029 253 PANTHER CYCLIN-DEPENDENT KINASE INHIBITOR 4-RELATED 1 249 IPR044275 GO:0004861|GO:0045736|GO:0051726
Cma08g01029 253 Gene3D p27 202 253 IPR044898 -
Cma08g01029 253 MobiDBLite consensus disorder prediction 37 56 - -
Cma08g01029 253 Pfam Cyclin-dependent kinase inhibitor 204 251 IPR003175 GO:0004861|GO:0005634|GO:0051726
Cma08g01029 253 PANTHER CYCLIN-DEPENDENT KINASE INHIBITOR 1 249 - -
Cma08g01029 253 PIRSF CKI_KRP_plant 85 253 IPR044275 GO:0004861|GO:0045736|GO:0051726
Cma08g01029 253 PIRSF CKI_KRP_plant 1 140 IPR044275 GO:0004861|GO:0045736|GO:0051726
Cma08g01029 253 MobiDBLite consensus disorder prediction 68 114 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g01029 - - - cmo:103496975 353.599
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma08g01029 Cma14g01889 CCT
Cma06g01246 Cma08g01029 CCT
Cma08g01029 Cma17g00108 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g01029 Cma-Chr8:6435483 Cma19g00159 Cma-Chr19:1062954 7.38E-28 dispersed
Cma14g01889 Cma-Chr14:13372199 Cma08g01029 Cma-Chr8:6435483 2.69E-43 wgd
Cma17g00108 Cma-Chr17:524868 Cma08g01029 Cma-Chr8:6435483 3.85E-134 wgd
Cma02g01684 Cma-Chr2:9485872 Cma08g01029 Cma-Chr8:6435483 9.85E-25 wgd
Cma06g01246 Cma-Chr6:8297784 Cma08g01029 Cma-Chr8:6435483 2.08E-51 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g892 Blo01g00325 Blo12g00119 . Bda08g00030 Bpe04g01065 Bpe14g00840 Bma04g01049 . Cmo08g01001 . Cma06g01246 Cma14g01889 Car06g01072 Car14g01691 Sed02g1489 Cpe08g00395 Cpe03g01588 Bhi01g00243 Tan10g0528 Cmetu06g1184 Lac12g2058 Hepe05g1754 . Lcy11g1768 . . . . . . . . . Cone7ag0385 . Lsi05g01832 Csa02g00930 . Cme06g00388 . . . Bda13g00492 Bpe05g01135 . Bma02g01208 . . Cmo06g01258 Cmo14g01940 Cma08g01029 Cma17g00108 . . Cpe12g00096 Cpe17g00248 . . . . . . . Cla05g00354 Cam05g0385 Cec05g0389 Cco05g0389 Clacu05g0380 Cmu05g0364 Cre05g0428 . Csa03g01103 Chy06g00374 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003251 3 1 4 4 3 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 2 2 50
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma08g01029 Cma_Chr08 FPKM 11.362535 13.162209 14.507946 14.178056 12.584635 12.688639 12.794835 6.032889 5.565787 4.834833