Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g01034 ATGGACGCAGCAGCACCACAGCTCGTCTCTTGCGGAATCGACACCATTCGCTGCCGAACCTTACCATCGCGCCTTCAATTTCCCAAACCAATCGTCAGAACTCGCAGGCGCGCCGGTAAGGTTCTTGCGGTTGCGACTGACCCGAAATCGACGCGGAATGAGTCCATGAATTCGTCTCCAACGAAGTACGTCAATGGATCAGCGAGATCCCCTCCGGCTTCTAAAGCTGTTAACGGAGTTTCCACTAGAATTGGAGATGTTTCGAAGGAAATTAAAAGAGTTCGAGCCCAGATGGAAGAAAATGAAGAGCTGGCAATACTCATGAGAGGATTACGGGGACAGAATCTAAAGGATTCCCTTTTTGCAGAGGATAATGTTGAGCTCCGCCTTGTTGAGGTAGATGAGAGCAGCGAGTTTTTGCCATTGGCTTATGATCCTGATAGCATATCTGCATATTGGGGGAAAAGACCACAAGCTGTGGCAACACGAATTGTTCAGTTGCTTTCTGTTGCTGGAGGCTTTCTCTCACATATTGTCTGGGACATCATAAACAAGAAAGTTAAGGAGAATGAAGTTGAAAGAGCAATTGAATTAAGGGAAATTGTGACCTCGTTGGGTCCAGCATATATTAAACTAGGACAAGCTCTGAGTATTCGACCAGATATACTGTCACCTGCTGCAATGACTGAGTTACAAAAGCTTTGTGATAAGGTTCCTTCATTTCCCGATGATGTTGCTATGAGTCTTATTGAAGAGGAACTTGGTCAACCATGGCAAAACATTTATTCGGAACTTTCTCCTTCCCCAATTGCTGCTGCTTCTTTAGGGCAGGTATACAAAGGTCGTTTGAAAGAAAATGGAGATCTGGTGGCTGTTAAAGTTCAGAGGCCTTTCGTTCTAGAGACTGTAACTATTGATTTGTTTATCATACGGAATTTGGGCTTGGTTCTTCGGAAGTTTCCTCAGATTTCTCTAGATGTGGTTGGCTTGGTAGATGAATGGGCAGCTCGCTTCTTTGAGGAGCTAGATTATGTGAATGAGGGTGAAAATGGAACACGCTTTGCTGAGATGATGAGGAAGGACCTTCCACAGGTGGTTGTTCCAAAAACATACCAAAAATATACTTCAAGGAAGGTTCTCACTACTGGATGGATAGACGGAGAGAAGCTGTCCCAAAGTACAGAAAGTGATGTTGGGGAACTTGTGAATGTGGGAGTCATATGCTACCTAAAGCAGTTACTTGACACTGGATTCTTCCATGCTGATCCTCATCCTGGGAATTTGATCCGCACTCCAGATGGAAAGTTGGCCGTGCTTGACTTCGGTTTAGTCACAAAGTTAACTGATGATCAGAAGTATGGAATGATTGAAGCAATTGCACATCTCATTCATCGAGATTATTCGGCTATTGTCAAAGACTTTGTTAAGCTTGGTTTTATTCCAGAGGGTGTTAATTTGGAACCAATCTTGCCAGTCCTAGCAAAAGTTTTCGATCAGGCTCTTGAGGGTGGAGGTGCAAAGAATATCAACTTCCAGGAGCTGGCTTCAGATTTAGCTCAGATAACATTTGATTATCCATTTCGGATACCTCCATATTTTGCTCTTATAATCAGGGCAATTGGGGTTCTAGAAGGAATAGCTTTGGTGGGAAACCCTGATTTTGCCATCGTGGATGAGGCATATCCTTATATTGCACAGAGACTTCTGACTGATGAGTCCCCAAGGTTAAGGAGTGCTTTACGATACACAATCTATGGGAAATCCGGAGTATTTGATGCTGAGAGATTCATTGATGTTATGCAAGCCTTCGAGAATTTCATTACTGCAGCTAAAAGTGGGGGTGGAGAGGATTTAAGTGGAGATATGGCCGGGCTTGGTGGTCTGAAAAGTCAAACATCATCTTCCTTTCTTCAACTTCTTCCTGCTCCCCGCGAATTCGAGCAGAATCAACCTATTGAAACAAGAGCATCCTTGGCCTTTTTGCTGTCTGATAGAGGGAACTTCTTTCGGGAATTTCTTCTTGATGAGATTGTGAAGGGCATTGATGCAGTCACAAGGGAGCAGTTAGTACGTTTAATGTCAATCTTTGGACTTAGAAATGCTACACCAGTTTTTAATATGGTTCCTTCCATTGGACCATTCAAGCCTGTCGCACTTCTACCCACAGTATCAGAAGAAGACAGAGTCATACTAAATAATGTTCAAAAGATTCTCGAGTTCTTAACGGCGGGAAGTTCAATCTCAGCAACATCTAAGGAGGGTGCGGATGTTGTTCGAGTTATTCAGGAGCTTCTTCCAGTTTTGCCAGGCATCTCCACTACAGTTCTTCCTGAGGTGCTCAGTCGATTATCTTCCCGGTGTACAGCAAACTGGCTCCAAGTTTGGTCATGGTTTCAACGGATCAAACCGGTGAAGAGAGGCGTTTCTTTGTTGATTGTACTCCTGGCGTCGGCGGCGCGGAGCAGGTGCACCGCCGTAGTGTGCTCTTGCTATGCACCTTCAGGAAGCTTTAACAACAAAGGCGAAGGAAGCAAGACGAGCACCATTTTCAGGTCACGTTCTGTTGAAGAAAAGAGAGATGGGGTCAAGCAAAAATGGCGTAATAATCATGAGCTACAAGATGGTAACGGAAATGGGTCTAATGGGATTCATTTAGAAATCCCAAATCTCAAGAGCAATTTAAAGAAGACAAAGGAGAAGGAGGAAGAGGAGGAGACTTGTCCTACAGAAACAAGGAAAGTGAACTGGCCTGATGCCCATGGTAAAGATATTGCTCATATCCAAGAATTTGATCCAAGTGTATCAGGAGATGGGGAGCTTGAGGGAGTAAGAAACTCTTGTGTCTGCACGATTCAGTAA 2859 44.21 MDAAAPQLVSCGIDTIRCRTLPSRLQFPKPIVRTRRRAGKVLAVATDPKSTRNESMNSSPTKYVNGSARSPPASKAVNGVSTRIGDVSKEIKRVRAQMEENEELAILMRGLRGQNLKDSLFAEDNVELRLVEVDESSEFLPLAYDPDSISAYWGKRPQAVATRIVQLLSVAGGFLSHIVWDIINKKVKENEVERAIELREIVTSLGPAYIKLGQALSIRPDILSPAAMTELQKLCDKVPSFPDDVAMSLIEEELGQPWQNIYSELSPSPIAAASLGQVYKGRLKENGDLVAVKVQRPFVLETVTIDLFIIRNLGLVLRKFPQISLDVVGLVDEWAARFFEELDYVNEGENGTRFAEMMRKDLPQVVVPKTYQKYTSRKVLTTGWIDGEKLSQSTESDVGELVNVGVICYLKQLLDTGFFHADPHPGNLIRTPDGKLAVLDFGLVTKLTDDQKYGMIEAIAHLIHRDYSAIVKDFVKLGFIPEGVNLEPILPVLAKVFDQALEGGGAKNINFQELASDLAQITFDYPFRIPPYFALIIRAIGVLEGIALVGNPDFAIVDEAYPYIAQRLLTDESPRLRSALRYTIYGKSGVFDAERFIDVMQAFENFITAAKSGGGEDLSGDMAGLGGLKSQTSSSFLQLLPAPREFEQNQPIETRASLAFLLSDRGNFFREFLLDEIVKGIDAVTREQLVRLMSIFGLRNATPVFNMVPSIGPFKPVALLPTVSEEDRVILNNVQKILEFLTAGSSISATSKEGADVVRVIQELLPVLPGISTTVLPEVLSRLSSRCTANWLQVWSWFQRIKPVKRGVSLLIVLLASAARSRCTAVVCSCYAPSGSFNNKGEGSKTSTIFRSRSVEEKRDGVKQKWRNNHELQDGNGNGSNGIHLEIPNLKSNLKKTKEKEEEEETCPTETRKVNWPDAHGKDIAHIQEFDPSVSGDGELEGVRNSCVCTIQ 952
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6463423 6473913 + CmaCh08G010340.1 Cma08g01034 299729

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g01034 952 MobiDBLite consensus disorder prediction 46 78 - -
Cma08g01034 952 MobiDBLite consensus disorder prediction 863 920 - -
Cma08g01034 952 Pfam ABC1 atypical kinase-like domain 233 472 IPR004147 -
Cma08g01034 952 SUPERFAMILY Protein kinase-like (PK-like) 236 470 IPR011009 -
Cma08g01034 952 MobiDBLite consensus disorder prediction 891 920 - -
Cma08g01034 952 MobiDBLite consensus disorder prediction 48 77 - -
Cma08g01034 952 Coils Coil 84 104 - -
Cma08g01034 952 ProSiteProfiles Protein kinase domain profile. 264 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma08g01034 952 PANTHER PROTEIN KINASE-LIKE DOMAIN 32 791 - -
Cma08g01034 952 CDD ABC1_ADCK3-like 233 474 - -
Cma08g01034 952 PANTHER CHAPERONE-ACTIVITY OF BC1 COMPLEX CABC1 -RELATED 32 791 - -
Cma08g01034 952 MobiDBLite consensus disorder prediction 871 887 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g01034 K08869 ADCK, ABC1; aarF domain-containing kinase - csv:101212546 1415.59
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01361 Cma-Chr4:6954790 Cma08g01034 Cma-Chr8:6463423 1.46E-86 dispersed
Cma08g01034 Cma-Chr8:6463423 Cma11g01176 Cma-Chr11:6854193 6.87E-121 dispersed
Cma08g01034 Cma-Chr8:6463423 Cma07g00510 Cma-Chr7:2206266 5.08E-58 transposed
Cma08g01034 Cma-Chr8:6463423 Cma03g00776 Cma-Chr3:6032070 6.19E-58 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g879 . Blo12g00123 Bda03g01118 . Bpe04g01062 . . . Cmo08g01004 . . . . . . . . . . . . . . . Cla06g00742 Cam06g0795 Cec06g0800 . Clacu06g0794 Cmu06g0767 Cre06g1548 . . . . . . Chy05g00545 . . . . . . . . . Sed09g0191 . . Cma08g01034 . . . . Cpe17g00245 Bhi12g01511 Tan06g2320 Cmetu05g0760 Lac12g2067 Hepe03g0344 . Lcy13g0450 . . . . . . . Lsi09g01157 . . Cme05g00693
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009075 1 1 2 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 4 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma08g01034 Cma_Chr08 FPKM 9.442237 10.966915 13.620317 13.239307 5.660383 6.581623 6.479723 6.701312 6.684859 7.461182