Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g01035 ATGGCGGCACTCAGCAAATGGTCTTCTCTGTCTCTGCTTGCGCTTGCAATGGTGTTCTTTGTAACAATGGCTCTGGTTCGCAAAGAAGAGGTCTCTGAAATTAGGACTGTGTTAGCGACGAAGTTTCAGAGCTCTATCAACTCATCAATGGCGACCAGAGCGGTGAATGATGATTTGGAGGAACTTAACAATGAGCATGCTGTGGATAATCCTGACGAGATTGCTGCCTCTGTTGAGATGAGCATCCGTAACAGCACTGAAAGGAGAAAATTGGGATTTTTCTCCTGTGGAACTGGCAATCCCATTGATGACTGCTGGCGTTGTGACCCCAATTGGCATCACAAACGTAAACGCCTAGCTGAATGTGGCATTGGGTTTGGCCGGAATGCTATCGGTGGTCGTGATGGTCGTTTCTACGTTGTCACTGATTCGAGCGACAACGATCCGGTGAACCCGAAGCCAGGGACTCTTCGTCATGCTGTCATTCAAGAGAAACCTCTTTGGATTGTATTCAAAAGGGACATGGTGATTCAATTGAAACAAGAACTCATCATGAACAGTTTTAAGACCATTGATGCTCGCGGGGTCAATGTACACATTGCCAATGGCGCTTGCATCACAATACAGTTTGTGACTAATATCATTATCCATGGTCTTCACATCCATGATTGCAAGCCCACAGGAAATGCCATGGTGAGAAGCTCTCCAACTCATTTTGGGTGGAGAACCATGGCTGACGGAGATGCCATTTCCATCTTTGGGTCAAGCCATATATGGATCGACCACAATTCACTCTCTAATTGTGCCGATGGCCTTGTTGATGCTGTCATGGGCTCAACTGCAATCACCATCTCCAACAATCACTTCACCCACCACAATGAGGTGATGCTTCTAGGCCATAGTGATTCCTACACAAAGGACAAGCAAATGCAAGTCACCATTGCTTATAACCATTTTGGAGAGGGACTCATTCAAAGAATGCCAAGATGTAGGCATGGCTATTTCCATGTGGTGAACAATGACTACACTCATTGGGAGATGTATGCCATTGGTGGAAGTGCAAACCCCACCATCAATAGTCAAGGAAACAGATATGCTGCTCCAACCAACCCTTTTGCCAAAGAGGTGACCAAACGAGTTGAAACAGCAGAGAGCGAATGGAAAGGGTGGAACTGGAGATCAGAAGGAGATATGCTGCTGAACGGTGCTTATTTCACCCCATCAGGCGCTGGAGCTTCAGCAAGCTATGCGAGAGCCTCCAGCTTAGGAGCCAAATCTGCTTCCATGGTTGCCTCCATCACTTCTTCAGCAGGTTCGCTCCCTTGCCGCCGAGGCCATCCCTGCTAG 1347 47.51 MAALSKWSSLSLLALAMVFFVTMALVRKEEVSEIRTVLATKFQSSINSSMATRAVNDDLEELNNEHAVDNPDEIAASVEMSIRNSTERRKLGFFSCGTGNPIDDCWRCDPNWHHKRKRLAECGIGFGRNAIGGRDGRFYVVTDSSDNDPVNPKPGTLRHAVIQEKPLWIVFKRDMVIQLKQELIMNSFKTIDARGVNVHIANGACITIQFVTNIIIHGLHIHDCKPTGNAMVRSSPTHFGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLVDAVMGSTAITISNNHFTHHNEVMLLGHSDSYTKDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYAAPTNPFAKEVTKRVETAESEWKGWNWRSEGDMLLNGAYFTPSGAGASASYARASSLGAKSASMVASITSSAGSLPCRRGHPC 448
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6481057 6485649 + CmaCh08G010350.1 Cma08g01035 299730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g01035 448 PRINTS Pollen allergen Amb family signature 122 139 IPR018082 -
Cma08g01035 448 PRINTS Pollen allergen Amb family signature 146 171 IPR018082 -
Cma08g01035 448 PRINTS Pollen allergen Amb family signature 182 198 IPR018082 -
Cma08g01035 448 PRINTS Pollen allergen Amb family signature 246 267 IPR018082 -
Cma08g01035 448 PRINTS Pollen allergen Amb family signature 326 345 IPR018082 -
Cma08g01035 448 PRINTS Pollen allergen Amb family signature 348 367 IPR018082 -
Cma08g01035 448 PRINTS Pollen allergen Amb family signature 390 414 IPR018082 -
Cma08g01035 448 PRINTS Pollen allergen Amb family signature 419 442 IPR018082 -
Cma08g01035 448 PANTHER PECTATE LYASE 18-RELATED 18 445 IPR045032 GO:0030570
Cma08g01035 448 PANTHER PECTATE LYASE 18 445 - -
Cma08g01035 448 SUPERFAMILY Pectin lyase-like 76 442 IPR011050 -
Cma08g01035 448 SMART amb_all 174 371 IPR002022 -
Cma08g01035 448 Pfam Pectate lyase 186 363 IPR002022 -
Cma08g01035 448 Gene3D - 99 441 IPR012334 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma08g01035 Cma14g01872 CCT
Cma06g01265 Cma08g01035 CCT
Cma06g01265 Cma08g01035 ECH
Cma08g01035 Cma14g01872 ECH
Cma08g01035 Cma17g00116 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g01035 Cma-Chr8:6481057 Cma19g00136 Cma-Chr19:853549 0 dispersed
Cma14g00604 Cma-Chr14:3003631 Cma08g01035 Cma-Chr8:6481057 1.94E-158 dispersed
Cma18g00126 Cma-Chr18:615357 Cma08g01035 Cma-Chr8:6481057 3.02E-168 dispersed
Cma18g00911 Cma-Chr18:7813567 Cma08g01035 Cma-Chr8:6481057 0 dispersed
Cma14g01872 Cma-Chr14:13264747 Cma08g01035 Cma-Chr8:6481057 0 wgd
Cma17g00116 Cma-Chr17:574066 Cma08g01035 Cma-Chr8:6481057 0 wgd
Cma02g01698 Cma-Chr2:9553186 Cma08g01035 Cma-Chr8:6481057 0 wgd
Cma06g01265 Cma-Chr6:8417871 Cma08g01035 Cma-Chr8:6481057 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g01035 K01728 - csv:101217580 845.884