Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g01036 ATGTCCACCAAATTCCTCTTCTTCTTCCTCTTCTTCTTCTTCTTCTTCTTCTCTCTCTCCTCTTTGGCTGCAACTACCCATGAAGAAGCTTCAGTTCTTTTCTCATGGCTTCACACTTCCTCTTCCCCTGTTTCCCCTGTTTTGTCCGATTGGAATGTCCGTGACTCAACGCCCTGTAACTGGACCTCCATTACTTGTTCTCCTCAAGGCTTTGTCACTCAAATCAACATCATTTCAATCCCTCTTCATCTCCCTTTCCCTTCAAATCTCTCCTCTTTTCACTCTCTTCAAAGGCTGGTCATTTCTGATGCTAATCTCACCGGCCCCATTCCTTCCGACATTGGTGACTGCACTGAGCTCACAATCATTGATTTGAGCTCAAACAACCTTGTCGGAACAATCCCAACAGCCATTGGAAAGCTCGAGAAGCTTGAGGATTTGATCTTGAACTCCAACCATCTGGCTGGGAAAATCCCATTTCAGCTCACCAATTGTAAGTCCCTCAAGACCTTGCTCTTGTTTGACAATAAACTGAGTGGAGGAATCCCTTCTGATATGGGAAAAATGAGGAATCTTGAGATTCTTAGAGCCGGTGGAAACAGAGATATCAATGGAGAAATCCCATATCAGATCGGAAATTGCAGAAATCTAACCATTTTGGGGTTGGCTGACACTAGAATTTCAGGCCCTTTGCCTAATTCTTTAGGCAAACTTGAAAAGCTTCAAACTCTATCCATTTACACCACCATGATCTCCAGCGAGATTCCACCAGAGCTAGGCAACTGTTCTGAGCTTGTCAACATGTTTCTTTATGAAAATAGTCTCTCTGGTTCAATACCAAAGGAGATTGGTAAGCTGCAGAAGCTTGAGCAGCTGTTTCTATGGCAGAATGAATTAGTTGGAACAATCCCAACTGAAGTTGGTGACTGTTTTAGCTTGAAAAAGATTGATCTTTCTTTGAATTTTCTTTCTGGGGCAATTCCTTTAACCTTAGGAGGTCTTCCTTTCCTTGAGGAGTTCATGATTAGTAGCAATAACGTGTCGGGTTCGATCCCTTCGAATCTTTCGAATGCTACGAATCTTTCGCAGTTGCAGCTTGATAGCAATGAGATTTCTGGTTTGATCCCTCCTGAGTTGGGGATGTTAAGGAATCTGAATGTGTTCTTTGCTTGGCAGAATCAGCTGGAAGGAAACATTCCATGGAGTTTGTCGAATTGTTCATATCTTCAAGCTCTTGATTTGTCTCATAATTCATTAACAGGCAGTGTTCCTCCTGGATTGTTTCACCTCAAGAACTTGACTAATCTTTTGTTGATTTCAAATGATATCTCTGGTACATTGCCTCCTGATATTGGTAACTGCAGCTCTCTTCTCCGGATGCGGCTTGGGAACAATCGGATTATGGGGTCGATCCCGGCGTCGATCGGTGCGCTACGGAGCTTGAATTTCCTTGATTTGTCTGGAAATCATCTTACAGGATCATTGCCTGCTGAGATTGGGAGCTGTGGAGCTTTGGAAATGATTGATCTAAGCAGCAATGAACTGAAAGGTTCATTGCCTGAATCACTGTCTTCACTGTCGGAGCTTCAAATTTTGGATGTCTCATCCAACAAATTTGTTGGTCGGATTCCTGCTAGCTTAGGACAGCTTGTTTCTTTGAATAAGCTCATTCTAGCTAGAAACTCTTTTTCAGGAACAATTCCCACATCGCTTAAACTCTGTTCAAATCTCCAACTACTTGATCTCAGCAGCAATCAACTGACCGGGAACGTACCGGTCGAATTAGGTTCGATCGTATCGCTCGAGATCGCTCTCAACCTTAGCTGTAATGAGCTGACTGGTTCATTGCCTTTTGAAATGTCTGGACTTAATAAGCTGTCTGTTCTTGACCTTTCACATAACAGGCTTGAAGGTGACTTGAAACCGCTTGCAGGGCTTGACAATCTTGTATTGCTCAACATTTCTTTCAATGAATTCATTGGTTATCTTCCGGACAACAAGCTTTTCAGACAGCTATTACCGACCGACTTGGCTGGCAACGATGGTCTCTGTTCGTCTATTAGAGATTCGTGTTTCGTAATGGATTCAGATAGGGAAGGACTTACGAATGACGGTGATGATACAACGAGATCACGAAAGTTGAAGCTAGCCATTGCATTGCTTATTTTCCTGACATTTATGATGATAGTAATGGGGTTGATCGCGGTGATTCGAGCACGGAAGATGATTCGAGACGAGGATTCGGAGATGGGAGATACTTGGCCTTGGCAATTCATACCATTCCAAAAACTGAATTTCTCTGTTGAGGAAGTGTTGAGGCTTCTTGTGGATGGCAATGTGATCGGCAAAGGGTGTTCGGGGATGGTTTATCGAGCGGAATTGGATAACGGGGAAGTGATTGCCGTGAAGAAGCTATGGCCAACAATGATGGAAACAGATAATAGTGACGATAAATGTCGAGTAAGGGATTCGTTTTCGGCCGAGGTTAAAACTCTAGGCTCGATACGTCACAAGAACATCGTGAGATTCTTGGGATGTTGTTCGAATCGAAACACGAAATTGTTAATGTACGATTATATGCCGAATGGTAGCTTGGGAAGTATTTTACATGAGAGAAATGGGAATGCTTTGGAATGGGATCTAAGATACCAAATCTTACTTGGTGCAGCACAAGGCCTGGCCTATTTGCACCATGATTGTGTCCCTCCAATTGTTCATAGGGACATTAAGGCCAACAACATTCTCATTGGTCTCGAATTCGAGGCCTATATCGCCGATTTCGGTCTAGCCAAGCTTATCGACAACGGAGATTTCGGTAGGTCATCCAACACAGTTGCAGGCTCTTATGGATACATTGCTCCTGAATATGGTTACATGATGAAGATAACCGAGAAGAGTGATGTCTACAGCTACGGCGTTGTGATAATCGAAGTCTTAACAGGAAAACAACCGATCGACCCAACGATACCAGACGGACTACACATAGTGGATTGGGTGAGAAGAAAGAGAGGGAACGAAGTCCTTGACCCGAGCTTGCAATCGAGACCAGAGACAGAAATAGAGGAGATGATGCAAGTTTTAGGCATAGCGTTATTGTGCGTAAACTCGACACCGGACGAGCGACCGACGATGAAAGACGTGGAAGCGATGCTGAAAGGAATCAAACATGAAAGAGAAGAGTATGCAAAAGTTGATATGTTGCTCAAAGGCGGGGCCTCTCCTACAAATGGAGGGCAAGAGAAGAACAACAAGAGCTCAAATAATGGCAATGGAGTTGGAATTGAATCATCTTCTTCAAAATTGTCAACCAGAAGCTTGCTCAACACAAGCTTTTCTGCTTCCTCGTTGATCTATTCATCATCATCCTCTAATGGCAGAGATAGTTAA 3387 43.49 MSTKFLFFFLFFFFFFFSLSSLAATTHEEASVLFSWLHTSSSPVSPVLSDWNVRDSTPCNWTSITCSPQGFVTQINIISIPLHLPFPSNLSSFHSLQRLVISDANLTGPIPSDIGDCTELTIIDLSSNNLVGTIPTAIGKLEKLEDLILNSNHLAGKIPFQLTNCKSLKTLLLFDNKLSGGIPSDMGKMRNLEILRAGGNRDINGEIPYQIGNCRNLTILGLADTRISGPLPNSLGKLEKLQTLSIYTTMISSEIPPELGNCSELVNMFLYENSLSGSIPKEIGKLQKLEQLFLWQNELVGTIPTEVGDCFSLKKIDLSLNFLSGAIPLTLGGLPFLEEFMISSNNVSGSIPSNLSNATNLSQLQLDSNEISGLIPPELGMLRNLNVFFAWQNQLEGNIPWSLSNCSYLQALDLSHNSLTGSVPPGLFHLKNLTNLLLISNDISGTLPPDIGNCSSLLRMRLGNNRIMGSIPASIGALRSLNFLDLSGNHLTGSLPAEIGSCGALEMIDLSSNELKGSLPESLSSLSELQILDVSSNKFVGRIPASLGQLVSLNKLILARNSFSGTIPTSLKLCSNLQLLDLSSNQLTGNVPVELGSIVSLEIALNLSCNELTGSLPFEMSGLNKLSVLDLSHNRLEGDLKPLAGLDNLVLLNISFNEFIGYLPDNKLFRQLLPTDLAGNDGLCSSIRDSCFVMDSDREGLTNDGDDTTRSRKLKLAIALLIFLTFMMIVMGLIAVIRARKMIRDEDSEMGDTWPWQFIPFQKLNFSVEEVLRLLVDGNVIGKGCSGMVYRAELDNGEVIAVKKLWPTMMETDNSDDKCRVRDSFSAEVKTLGSIRHKNIVRFLGCCSNRNTKLLMYDYMPNGSLGSILHERNGNALEWDLRYQILLGAAQGLAYLHHDCVPPIVHRDIKANNILIGLEFEAYIADFGLAKLIDNGDFGRSSNTVAGSYGYIAPEYGYMMKITEKSDVYSYGVVIIEVLTGKQPIDPTIPDGLHIVDWVRRKRGNEVLDPSLQSRPETEIEEMMQVLGIALLCVNSTPDERPTMKDVEAMLKGIKHEREEYAKVDMLLKGGASPTNGGQEKNNKSSNNGNGVGIESSSSKLSTRSLLNTSFSASSLIYSSSSSNGRDS 1128
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6491688 6495756 + CmaCh08G010360.1 Cma08g01036 299731

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g01036 1128 Gene3D Ribonuclease Inhibitor 231 325 IPR032675 -
Cma08g01036 1128 Gene3D Ribonuclease Inhibitor 142 230 IPR032675 -
Cma08g01036 1128 Gene3D Ribonuclease Inhibitor 28 141 IPR032675 -
Cma08g01036 1128 SUPERFAMILY L domain-like 42 395 - -
Cma08g01036 1128 Gene3D Ribonuclease Inhibitor 604 691 IPR032675 -
Cma08g01036 1128 Pfam Protein tyrosine and serine/threonine kinase 778 1050 IPR001245 GO:0004672|GO:0006468
Cma08g01036 1128 PANTHER RECEPTOR-LIKE PROTEIN KINASE 2 7 1121 - -
Cma08g01036 1128 SMART serkin_6 775 1051 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma08g01036 1128 SMART LRR_typ_2 478 502 IPR003591 -
Cma08g01036 1128 SMART LRR_typ_2 334 358 IPR003591 -
Cma08g01036 1128 SMART LRR_typ_2 623 647 IPR003591 -
Cma08g01036 1128 SMART LRR_typ_2 526 550 IPR003591 -
Cma08g01036 1128 SMART LRR_typ_2 286 310 IPR003591 -
Cma08g01036 1128 SMART LRR_typ_2 430 454 IPR003591 -
Cma08g01036 1128 SMART LRR_typ_2 238 262 IPR003591 -
Cma08g01036 1128 SMART LRR_typ_2 141 165 IPR003591 -
Cma08g01036 1128 ProSitePatterns Protein kinases ATP-binding region signature. 781 804 IPR017441 GO:0005524
Cma08g01036 1128 MobiDBLite consensus disorder prediction 1069 1103 - -
Cma08g01036 1128 ProSitePatterns Serine/Threonine protein kinases active-site signature. 904 916 IPR008271 GO:0004672|GO:0006468
Cma08g01036 1128 SUPERFAMILY Protein kinase-like (PK-like) 759 1051 IPR011009 -
Cma08g01036 1128 SUPERFAMILY L domain-like 405 664 - -
Cma08g01036 1128 Pfam Leucine rich repeat N-terminal domain 29 67 IPR013210 -
Cma08g01036 1128 Gene3D Phosphorylase Kinase; domain 1 762 859 - -
Cma08g01036 1128 ProSiteProfiles Leucine-rich repeat profile. 625 647 IPR001611 GO:0005515
Cma08g01036 1128 ProSiteProfiles Protein kinase domain profile. 775 1059 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma08g01036 1128 PRINTS Leucine-rich repeat signature 409 422 - -
Cma08g01036 1128 PRINTS Leucine-rich repeat signature 623 636 - -
Cma08g01036 1128 Gene3D Transferase(Phosphotransferase) domain 1 860 1069 - -
Cma08g01036 1128 MobiDBLite consensus disorder prediction 1075 1103 - -
Cma08g01036 1128 Gene3D Ribonuclease Inhibitor 519 603 IPR032675 -
Cma08g01036 1128 Gene3D Ribonuclease Inhibitor 326 423 IPR032675 -
Cma08g01036 1128 Gene3D Ribonuclease Inhibitor 424 518 IPR032675 -
Cma08g01036 1128 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 7 1121 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g01036 - - - csv:105434583 1795.79
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g01036 Cma-Chr8:6491688 Cma09g01094 Cma-Chr9:5920330 0 dispersed
Cma14g01870 Cma-Chr14:13251493 Cma08g01036 Cma-Chr8:6491688 0 wgd
Cma17g00118 Cma-Chr17:586539 Cma08g01036 Cma-Chr8:6491688 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g842 . . . . . . . . Cmo08g01007 . . . . . . . Cpe03g01568 . . . . . . . . . . . . . . Cone14ag0208 Cone15ag0229 . . . . . . . . . . . . . . . . . Cma08g01036 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000434 1 4 5 2 3 4 5 3 4 4 4 4 5 4 3 5 4 5 6 4 4 3 3 2 3 4 3 1 2 3 107
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68769 PF07714 PK_Tyr_Ser-Thr 4.10E-44 CL0016 Cma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma08g01036 Cma_Chr08 FPKM 14.183844 14.411755 0.232384 0.200881 0.137333 0.257157 0.35174 0.089152 0.107272 0.202008