Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g01041 ATGGCAGCTCCAAACTGCACACTGACTTTGGCCCAGCTCCTCGGCCCCAATGTCACGAACTCCGGCGCCGCTGCCTCCTTCATCTGCGATCAATTCTCTACAACCACCACCAACTTCTCCGACACCAAATTCGCCGTCGACACCGTCTACCTTCTCTTCTCCGCCTACCTCGTCTTCTCTATGCAACTCGGCTTCGCCATGCTCTGCGCCGGCTCCGTCCGTGCTAAAAACACCATGAACATCATGCTCACCAACGTCCTCGACGCTGCCGCCGGCGGCCTCTTTTACTACCTCTTCGGCTTCGCCTTTGCCTTCGGCAGCCCCTCCAACGCCTTCATCGGCCGCCATTTCTTCGGCCTCAAGTCAATCCCCTCCGCCACCCCCACCCCCACCGATTATAGCTTCTTCCTTTATCAATGGGCTTTCGCCATCGCCGCCGCCGGCATCACCAGCGGTTCTATTGCCGAGCGGACCCAATTCGTTGCCTATTTGATCTACTCCTCTGTTTTGACCGGCTTTGTTTACCCGGTGGTTTCCCACTGGTTTTGGTCTCCAGACGGTTGGGCCAGCCCCTCCCGGTCCAATGGAAATCTCTTATTCGGAACCGGAGTCATCGATTTTGCCGGTTCGGGCGTGGTTCACATGGTGGGTGGAATCGCCGGACTTTGGGGTGCTTTAATAGAAGGACCAAGAATCGGTCGGTTCGAAAAAACTGGACGATCCGTTGCGCTACGAGGTCATAGTGCTACGTTAGTCGTTCTCGGTACCTTCATGCTTTGGTTCGGTTGGTACGGGTTCAACCCCGGTTCATTCACCAAAATCCTAGTTCCGTACGGTGTGGGTGATTTCTACGGACAGTGGAGCGCCGTCGGTCGGACTGCCGTTACAACCACCCTCGCCGGTTGCACAGCAGCGTTGACTACCCTTTTTGGAAAAAGAATTCTCTCCGGCCACTGGAACGTCACCGACGTCTGCAACGGATTACTCGGCGGCTTCGCCGCCATAACCTCCGGCTGCTCAGTGGTGGAGCCATGGGCGGCAGTGATATGCGGATTTGTGGCGGCGTTGGTGTTAATCAGCTTGAACAAACTGGCGGAGAAGGTGAAATTTGATGACCCATTAGAGGCAGCACAATTGCACGGCGGGTGCGGCGCGTGGGGGATAATTTTCACAGCATTGTTCGCGACAAAGGAGTATGTGAACGAGGTGTACGGCGGAGAGATCGGGCGGCCACATGGGTTGTTCATGGGCGGCGGAGGGAAGTTGCTGGCGGCGCATCTTATACAGATTTTGGTGATTACTGGGTGGGTAAGCATCACAATGGGACCATTGTTTTTCGGGCTTCATAAACTGAAGCTACTGAGAATCTCGCCGGCGGATGAGATGGCCGGAATGGACATGACACGACACGGTGGATTTGCTTACGTGTACCATGATGAAGATGAGTCACCAGCGAATGGGGTCCAGATGAGAAGGATTGAGCCAAGGGACACCAGTCCATTTGGAAATTAA 1512 55.22 MAAPNCTLTLAQLLGPNVTNSGAAASFICDQFSTTTTNFSDTKFAVDTVYLLFSAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLFYYLFGFAFAFGSPSNAFIGRHFFGLKSIPSATPTPTDYSFFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSVLTGFVYPVVSHWFWSPDGWASPSRSNGNLLFGTGVIDFAGSGVVHMVGGIAGLWGALIEGPRIGRFEKTGRSVALRGHSATLVVLGTFMLWFGWYGFNPGSFTKILVPYGVGDFYGQWSAVGRTAVTTTLAGCTAALTTLFGKRILSGHWNVTDVCNGLLGGFAAITSGCSVVEPWAAVICGFVAALVLISLNKLAEKVKFDDPLEAAQLHGGCGAWGIIFTALFATKEYVNEVYGGEIGRPHGLFMGGGGKLLAAHLIQILVITGWVSITMGPLFFGLHKLKLLRISPADEMAGMDMTRHGGFAYVYHDEDESPANGVQMRRIEPRDTSPFGN 503
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6522942 6524453 + CmaCh08G010410.1 Cma08g01041 299736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g01041 503 PANTHER AMMONIUM TRANSPORTER 6 498 - -
Cma08g01041 503 ProSitePatterns Ammonium transporters signature. 206 231 IPR018047 GO:0008519|GO:0016020|GO:0072488
Cma08g01041 503 Gene3D Ammonium transporter AmtB like domains 26 493 IPR029020 -
Cma08g01041 503 TIGRFAM amt: ammonium transporter 47 475 IPR001905 GO:0008519|GO:0016020|GO:0072488
Cma08g01041 503 PANTHER AMMONIUM TRANSPORTER 1 MEMBER 1 6 498 - -
Cma08g01041 503 SUPERFAMILY Ammonium transporter 46 456 - -
Cma08g01041 503 Pfam Ammonium Transporter Family 50 475 IPR024041 GO:0008519|GO:0016020|GO:0072488
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g01041 Cma-Chr8:6522942 Cma14g00047 Cma-Chr14:204352 1.16E-15 dispersed
Cma12g00980 Cma-Chr12:7754385 Cma08g01041 Cma-Chr8:6522942 0 transposed
Cma14g01856 Cma-Chr14:13191687 Cma08g01041 Cma-Chr8:6522942 0 wgd
Cma02g01713 Cma-Chr2:9641402 Cma08g01041 Cma-Chr8:6522942 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g01041 K03320 - csv:101212168 912.524