Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g01048 ATGGCTTCGGCTCAGGTTTTGCCCAATTCTATGGCTTCGACTCGGAAATTAGAGCATTTGGAAGCAGGGAAGCGTCGGTTAGAGGAGTTCAGAAAGAAAAAGGCAGCAGAACGAGTCAAGAAAGCCGCACCACCAAGCCAAAACCACATTTCAGCTGGTGGTTCCCAGGAACAGAAACCTTTAGAATCTGAACATGCTCAACGAATTACAGATTCTGATGGAGCTACGACAACGAATGGAGCTGGCAGATCTGCTATTGAATCATCCTCTGTGGTAGTCAAAGATGACAGAAATAAAAATAGCTTTTCTCAGAATATTGATCAACATGTCTTGAATGAAAGACATGCGGACTATCCTTTTACAAGAAATGGGGATGGAGCCTTTTCTGCTAAACCGGTGAAGCAACCATCAAATGGTCAAGGGCTCTCTGGAACCACACATGGTATTAGTGGAAACAAAATATTAGAAATAAATAAGGATTCCGGAGTAAGCAGTGGCTCCCAGGCTAGAATTCCGTTTGGGAGTGCATCTGGCATTGGGCAACACGCAAGTAAAGAGACCGATAATATTTTTGGTCAGTCTGCTCTCCGTGAGGTGGATGGACCACTCAATAGAAGAGATGGTCAAGAAAATTCTATACTTAAGAGCTCTGGTCCTTTGCATAAGTTTTCTGCAAACATTTCTCCACAGAATACTATCGGAAATTTACAATATACAGATTCCAGTAGTAACAATATTTTGGCTAGTGGACATTCTTTCACGTCATCTAATGATGGCTTCTTTAATAGTACAAGTAGAAAAGGATATAGTTCCCAAAAAGTTGGGGAAAATGTGCACAGAACTTCAGAATTCATTGGAGAGCAGACATCTGATCTTGGACAACTAAAGCCCTTTGATGTAACTGATTTTACTAGAATCAAGCCTTCAAACATGCAGTCATCTGAATCTGCTGGTTCTAATACTGACTCGAGAAGCCCCTCCATCTATGAACCGTCATATACAACATCATCTGAAAATAGTTTTAGGAGGTCTCGCTCATTGTTTCTTGATTCTCTTACTGTACCCAAGGCTCCTTCAGGGAGTTTTCTTGGGCTTGCTGAACATGATAAGGGATCTAGAATATCTGATGGGTTTAAAGCAAATGAAAAAGAGGCCACAATATCCTTCTCTTTTCAGAATCTTATCAAATCTGATGGGTTCAGAACAAACGAACGCGATGGCTCAGAGTCATTGCCTTTTCAGAAGCCATTAATGGATATGAAAACAGCAGGAACATCCTCAAAATTTTCCTCTCAAAACACTCCAGTATCATATAGCGATTCCTTTCCTCCTCCAGTTTTTGTTGCTAAGGGTGTGGACCAGCCAATTGTAGGGATAGAGGAGGATAGTATGCTGGAGAAGAAACACGAGCTTTATTCATCCAAGAAATATGAAGATTTTGCTGCTTTGGAGCAGCACATTGAAGATTTGACACAAGAGAAATTCTCATTACAAAAAGCTGTGGAGGCTTCAAGGGCTTTAGCAGAGTCCTTAGCTGCTGAAAATTCATCTCTTACAGATAGCTATAATCAACAGAGAAGTGTTGTCAACCAACTAAAATCTGATATGGAGATGTTACAAGAGGAAATGAAGACGCAAATGGTTGAACTGGAATCTATCAAACTTGAGTATGCAAATGTACAACTAGAGTGTAATGCAGCTGATGAACGTGCCAAGCTGATAGCTTCTGAAGTAATTGGTCTTGAAGATAAGGCCTTAAGACTAAGGTCTAATGAGTTAAAGCTGGAGAGGCAATTGGAGAACTTAGAAGCTGAAATCTCTTCATACAAGAAGAAAATGTCTATCATGGAGAAAGAACGTCAAGATTTTCAGTCAACTATTGATGCTCTTCAGGAAGAGAAGAAGCTGCTGCAGTCGAAGTATCGCAAAGCTTCTACAAGTGGAAAGTCTATTGATATTAGCAATACTTCTAATAGAAAAGACATGGCGACATCTACAGAAGAGTTAGATACTACTCCTGGTACTTCTAACCATGAAGTAAAAGATGGAGCATCTTTTACTGAAGATGATACCTCCGGAGTTCCCATGCTGCTTGAAAATGCTACTACTGAAGTTTCATCAGTCATTATCCCTCCCGATCACATGAGGACGGTTCAAAACATCAATGCTCTAATGGCTGAGTTAGCTTTAGAGAAAGAGGAGTTAACACAAGCTTTGGCATCTGAGTTAACTGGCAATTCTAGGTTGAAGGAGTTGAACAAAGAGCTCACTAGGAAACTAGAAGCACAAACTCAAAGATTAGAGCTTTTGACTGCTCAAAGTATGGCTGGTGAGATTGTTCCTGTGAGTCATCTTGATTCTCGCGCAGTGCATCATGAACCTGAAAATATCGTACTTGCAGATGAAGGCGATGAGAGTCTTGGGATGGATTATGAAGCTCTTTCCAAGTGGCTCATCGCGCCGAAGAACCAGCAAGCTTCTTTGAGATTGTGGGGG 2496 41.03 MASAQVLPNSMASTRKLEHLEAGKRRLEEFRKKKAAERVKKAAPPSQNHISAGGSQEQKPLESEHAQRITDSDGATTTNGAGRSAIESSSVVVKDDRNKNSFSQNIDQHVLNERHADYPFTRNGDGAFSAKPVKQPSNGQGLSGTTHGISGNKILEINKDSGVSSGSQARIPFGSASGIGQHASKETDNIFGQSALREVDGPLNRRDGQENSILKSSGPLHKFSANISPQNTIGNLQYTDSSSNNILASGHSFTSSNDGFFNSTSRKGYSSQKVGENVHRTSEFIGEQTSDLGQLKPFDVTDFTRIKPSNMQSSESAGSNTDSRSPSIYEPSYTTSSENSFRRSRSLFLDSLTVPKAPSGSFLGLAEHDKGSRISDGFKANEKEATISFSFQNLIKSDGFRTNERDGSESLPFQKPLMDMKTAGTSSKFSSQNTPVSYSDSFPPPVFVAKGVDQPIVGIEEDSMLEKKHELYSSKKYEDFAALEQHIEDLTQEKFSLQKAVEASRALAESLAAENSSLTDSYNQQRSVVNQLKSDMEMLQEEMKTQMVELESIKLEYANVQLECNAADERAKLIASEVIGLEDKALRLRSNELKLERQLENLEAEISSYKKKMSIMEKERQDFQSTIDALQEEKKLLQSKYRKASTSGKSIDISNTSNRKDMATSTEELDTTPGTSNHEVKDGASFTEDDTSGVPMLLENATTEVSSVIIPPDHMRTVQNINALMAELALEKEELTQALASELTGNSRLKELNKELTRKLEAQTQRLELLTAQSMAGEIVPVSHLDSRAVHHEPENIVLADEGDESLGMDYEALSKWLIAPKNQQASLRLWG 832
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6553033 6563329 - CmaCh08G010480.1 Cma08g01048 299743

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g01048 832 Coils Coil 718 741 - -
Cma08g01048 832 MobiDBLite consensus disorder prediction 305 336 - -
Cma08g01048 832 Coils Coil 480 500 - -
Cma08g01048 832 Coils Coil 522 570 - -
Cma08g01048 832 Coils Coil 585 647 - -
Cma08g01048 832 MobiDBLite consensus disorder prediction 647 692 - -
Cma08g01048 832 MobiDBLite consensus disorder prediction 17 40 - -
Cma08g01048 832 MobiDBLite consensus disorder prediction 70 86 - -
Cma08g01048 832 MobiDBLite consensus disorder prediction 95 109 - -
Cma08g01048 832 MobiDBLite consensus disorder prediction 1 110 - -
Cma08g01048 832 Gene3D - 475 651 - -
Cma08g01048 832 Coils Coil 746 773 - -
Cma08g01048 832 PANTHER PROTEIN BLISTER 1 806 IPR044194 GO:0040008
Cma08g01048 832 MobiDBLite consensus disorder prediction 647 681 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g01048 - - - bhj:120092754 1128.62
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma08g01048 Cma17g00125 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma17g00125 Cma-Chr17:636424 Cma08g01048 Cma-Chr8:6553033 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g814 . . . . Bpe04g01051 . Bma04g01032 . Cmo08g01019 Cmo17g00127 . . . . . . . . . . . . . . . . . . . . . Cone14ag0199 Cone15ag0212 . . . Csa02g01012 Chy05g00276 . . . . . . . . . Sed09g0207 . . Cma08g01048 Cma17g00125 Car08g00923 Car17g00111 Cpe12g00109 . Bhi12g01537 Tan06g2351 Cmetu05g1285 . . . Lcy13g0426 . . . . . . . Lsi09g01178 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004173 0 3 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 2 3 1 1 5 2 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma08g01048 Cma_Chr08 FPKM 3.624577 3.780971 4.51652 4.578117 4.688692 4.264678 5.802327 5.59797 5.34144 5.579072