Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g01052 ATGGCTGAGGACCCAATGCAGTCGATATCTTCTCAAAAGAGAAGGCCAAAGAGGAAGAGAATCCAGAAAGACCCAGAATTGGACCGTCTCGATTCACTCTCATGGAAGTCATCAATCCCGAGGGACGACGCCTTGTCTGCTTTCATTGGATCCAACGATCTCGAAGGAGGTTTTCTTTCGCTTGAGGAGATTGACGAAGCTGAGTATGGCCTGACAATTCCAAAACCTGAAACAGTGAAACAGAAGTTGACATCAACAGCCAGCAAAAAGTCAAAGAAAGGTGAGCAAGACAATGTTGATGGCTGTGGGGGTGCATCGGGAGATGGTGAGGGTAGCATGAATAAGGAAGAGGGGGACAATATGAATATGGAAACAAACAAAAAAGGGAAGAAGGAGAAGAAGAAGAAAAAGAAAAAGAAGAAAAACAAGGTCAATAATGAAGCCCCAACAAGTGAGGAAGATGTGGGTGAAATTATAGGTGGCAGTGATGGTGATGGGATCGAGACAGAGGTTGGAGATGAATTGGATGGCGGTGATGATTTGGAGATGGAGAAGAAGCTGCAGAAGGAAAAAAAAGAAACAAAGGATCATGGAATTGATAAAGAAATCAAGGATGAAGTTGAAAAGGATGCAGTTGATGAAACTGAATATTATGCATGGAATGAGTTGAGACTTCACCCTTTGCTTATGAAATCGATCTACAAACTTGGGTTTAAGGAACCTACAGCGATCCAGAAAGCTTGTATTCCAGCTGCTGCTTACCAGGGGAAGGATGTTGTTGGTGCTGCTGAGACAGGATCTGGAAAAACACTAGCTTTTGGATTGCCAATCCTACAACGTTTATTGGACGAACGGGAAAAGTCTGGAAAGAAGTCTGAAGAAGAGGGAGTGGATGCAGGAAGATATGCTCGCAGAAGTCTTCTACGGGCTCTTATTATTACTCCTACTAGAGAACTTGCTATTCAGGTAACCGATCATCTCAAGGCAGTCGCAGTGGGTACAAATATTAGGGTGGTTCCAATCGTTGGTGGGATGTCCACTGAAAAGCAGGAAAGACTTTTAAGGATGAGGCCAGAGATTGTAGTTGGAACGCCAGGGCGGTTGTGGGAACTTATGTCGGGAGGAGAAAGGCATCTTGTTGAATTGCAGACATTGTCTTTCTTTGTACTGGATGAGGCTGATAGGATGATAGAAAATGGGCACTTTCGTGAGTTGCAGTCCATTATTGATATGCTCCCTGCGGCAAATTGTTCTACAGAAAATTCACAAAATGCAGAAAACTCTTCGACCATTCCAAGTTCTCAAAGAAAGAAACGGCAAACACTTGTGTTTTCTGCAACATTGTCACTGTCTTCTGATTTTCGCAAGAAATTAAAGCGTGGATCATCCAGACCTAGTCAAGCAGGAGGGATGGATGGTTTGAATTCTATAGAAGCTCTGTCTGAGAGAGCTGGGATTAGACCTAATGTTGCTATTATAAATCTGACTAACACATCGGTTTTGGCAAATAATCTTGAAGAATCATTTATAGAATGTAGGGAAGAAGACAAGGATGCTTATTTGTATTACATTCTGTCTGTTTATGGAAAAGGCCGCACAATTGTCTTCTGCACATCCATTGCTGCACTACGTCATATTTCTGCTTTATTGTGCATTGTTGGTATCAATGTCTTGACTCTTCATGCTCAAAGGCAGCAACGAGCTCGCTTGAAGGCAATCGATCGTTTCCGTGGAAGGGAAAATGGGATACTGATTGCCACTGACGTTGCAGCTAGAGGCCTTGATATTCCTGGTGTTCGAACTGTTGTCCACTATCAACTACCACATTCAGCTGAGGTTTACGTTCATAGAAGTGGAAGAACAGCCAGAGCTTCTGCTGATGGATGCAGTATCGCATTGGTCTCTGCCAATGAAACTTCCAAATTTGCTACTCTGTGCAAATCTTTCTCTAAGGAAAGCTTCCAGCGATTTCCTGTTGATAATTCATACATGCCAGAGGTTCTAAAACGAATGTCTCTTGCACGCCAGATCGACAAGATTATGCGGAAGGATTCTCAAGAGAAGGCAAAAAGAACCTGGTTTGAGCGGAATGCAGAGTTAGTGGAATTAGTAGTGGATAACGATGACAGTGAAGATGAGAGAGCAAACAATCATAAGCAGAAGAAATTTGGCTCCATGCAGTTAAAGAAATTGCAAGAGGAGCTCGACAAGCTGCTTTCCCACCCCCTGCAACCGAAATCATTCTCACACCGTTATTTGGCCGGAGCTGGGGTCTCACCTCTTCTGCAACATCAATTTGAAGAGATGGTCAAGCAGAACGGGACTGTTCAGAATACGGGAGATAACAAAAGGAGGAAGTTGGCTGCTATTGGCCAAGATCTTATGGAACCACTTCAAGCACTTCGAACCGGTGGTCAACAGGTACATATGGATGCAAAAGAGATGGCTGATAAACGGAAGAAAGTGGAGAACCTTAGGAGGAAGAAAAAAGAGGAGAAAAAACGCTTGCGTGATCAGCGAAGAAATAAACGGAAACAAATGAAAGGCAAGATTTAG 2556 43.35 MAEDPMQSISSQKRRPKRKRIQKDPELDRLDSLSWKSSIPRDDALSAFIGSNDLEGGFLSLEEIDEAEYGLTIPKPETVKQKLTSTASKKSKKGEQDNVDGCGGASGDGEGSMNKEEGDNMNMETNKKGKKEKKKKKKKKKNKVNNEAPTSEEDVGEIIGGSDGDGIETEVGDELDGGDDLEMEKKLQKEKKETKDHGIDKEIKDEVEKDAVDETEYYAWNELRLHPLLMKSIYKLGFKEPTAIQKACIPAAAYQGKDVVGAAETGSGKTLAFGLPILQRLLDEREKSGKKSEEEGVDAGRYARRSLLRALIITPTRELAIQVTDHLKAVAVGTNIRVVPIVGGMSTEKQERLLRMRPEIVVGTPGRLWELMSGGERHLVELQTLSFFVLDEADRMIENGHFRELQSIIDMLPAANCSTENSQNAENSSTIPSSQRKKRQTLVFSATLSLSSDFRKKLKRGSSRPSQAGGMDGLNSIEALSERAGIRPNVAIINLTNTSVLANNLEESFIECREEDKDAYLYYILSVYGKGRTIVFCTSIAALRHISALLCIVGINVLTLHAQRQQRARLKAIDRFRGRENGILIATDVAARGLDIPGVRTVVHYQLPHSAEVYVHRSGRTARASADGCSIALVSANETSKFATLCKSFSKESFQRFPVDNSYMPEVLKRMSLARQIDKIMRKDSQEKAKRTWFERNAELVELVVDNDDSEDERANNHKQKKFGSMQLKKLQEELDKLLSHPLQPKSFSHRYLAGAGVSPLLQHQFEEMVKQNGTVQNTGDNKRRKLAAIGQDLMEPLQALRTGGQQVHMDAKEMADKRKKVENLRRKKKEEKKRLRDQRRNKRKQMKGKI 851
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6591167 6603515 + CmaCh08G010520.1 Cma08g01052 299747

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g01052 851 MobiDBLite consensus disorder prediction 129 143 - -
Cma08g01052 851 Pfam Helicase conserved C-terminal domain 516 624 IPR001650 -
Cma08g01052 851 SMART ultradead3 237 480 IPR014001 -
Cma08g01052 851 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 218 246 IPR014014 GO:0003724
Cma08g01052 851 MobiDBLite consensus disorder prediction 112 128 - -
Cma08g01052 851 MobiDBLite consensus disorder prediction 803 851 - -
Cma08g01052 851 Pfam DEAD/DEAH box helicase 242 449 IPR011545 GO:0003676|GO:0005524
Cma08g01052 851 Gene3D - 179 467 IPR027417 -
Cma08g01052 851 MobiDBLite consensus disorder prediction 69 180 - -
Cma08g01052 851 MobiDBLite consensus disorder prediction 1 28 - -
Cma08g01052 851 PANTHER RNA HELICASE 80 773 - -
Cma08g01052 851 SMART helicmild6 544 625 IPR001650 -
Cma08g01052 851 Coils Coil 127 147 - -
Cma08g01052 851 CDD SF2_C_DEAD 505 634 - -
Cma08g01052 851 MobiDBLite consensus disorder prediction 419 439 - -
Cma08g01052 851 PANTHER ATP-DEPENDENT RNA HELICASE DDX24 80 773 - -
Cma08g01052 851 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 309 640 IPR027417 -
Cma08g01052 851 CDD DEADc_DDX24 229 493 - -
Cma08g01052 851 MobiDBLite consensus disorder prediction 822 851 - -
Cma08g01052 851 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 389 397 IPR000629 -
Cma08g01052 851 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 504 665 IPR001650 -
Cma08g01052 851 Gene3D - 494 739 IPR027417 -
Cma08g01052 851 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 250 466 IPR014001 -
Cma08g01052 851 Coils Coil 812 846 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g01052 K14805 DDX24, MAK5; ATP-dependent RNA helicase DDX24/MAK5 [EC:3.6.4.13] - csv:101209958 1285.78
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g01052 Cma-Chr8:6591167 Cma09g01135 Cma-Chr9:6416908 3.76E-62 dispersed
Cma08g01052 Cma-Chr8:6591167 Cma15g01046 Cma-Chr15:6551181 2.79E-60 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g808 Blo01g00306 . . Bda08g00011 . . . Bma05g01262 Cmo08g01023 . . . . . . . . . . . . . . . Cla06g00708 Cam06g0758 Cec06g0764 Cco06g0776 Clacu06g0749 Cmu06g0732 Cre06g1509 . . . . . Csa02g01016 Chy05g00280 . . . . . Bpe05g01117 . . . . . . Cma08g01052 . Car08g00929 . . Cpe17g00224 . . . . . . . . . . . . . . Lsi09g01183 . . Cme05g00630
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011338 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma08g01052 Cma_Chr08 FPKM 7.196389 8.176767 11.957368 12.157311 11.260272 11.252184 11.929645 24.679443 26.569731 24.706591