Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g01072 ATGAGCACATATAGCTGCTCAAAACAATACAGTAGAACCAGTGCTAAACAGTGCCTGTACAACTCTAATGACGAAAGTGCAGCTCGGACTAGGCCATTCAGCTTTGAAGATATTATGCTTAGAAGGAAGAATAAAGAGTCAGCTGCTACTGATGGGGGTGACACAAGTAGCCAATCAAGAAGGGAAAGCATAGATAAGCACATTACTGCAAATCGTGAATCGGAAAGGCATTTCCGTCACAGTAGAGGTTCTTCTCTTGATGTGCAAAATCTCCCATTGGAGGAATCAGCCAAGATTAGCTCAAGAAGGAAAAAAGAGGAGACATTGTTGAAGGACAATATGGTGATCAGGAGTGACAGAAATAACTATGAATCTGGATTGACACTGATAGGTAAGCTGAAGCATGACACAAATGGAAAGGATAAAAGACAAAAGTATGGCCAGGAAAACCTTGGTTGGGGAAAAAATGATGAGCGATCAAGGATTGACATTGAAAATGAAACTGGAAAGAGGCATTCAAGAGATGCAGCTGGCAAGGATAGGCGTGAAAATCGTGGTAAGGGGAAATCTGAAAGAGAAAGTAAGAGAAAATATCAACATGGTGATGATGACAGGAACAGAGACAGGCACATAACAAAGAAACATGATCATGGTAAACATCATGACCTAGAAAGTAAAGAGAGAAAGGAAGCTAAAATATCGTTAAGTTCACATCATGAAGATTCTAGATTGAAAAAAAGACGAAAAAGAAGCCTAGATCGTCAAAGTAAACATAAAAAATCTGGTTCACTTTCTCCAAGGCCACCCAAGTCCTCAACTAAATTAGCCAGGCAGAAGGAGTTGCCATTAGATTCTCATGTAAAGAAGTCTGGAAGATGGCATTCTGATAGTGATAGAATAGGGGATTTCACCAACAGTTCCAGTAGCCAATACAGGCGGCATTCTGGGTTAACAAGAAGTGGGCTTGGTGGCTATTCACCAAGAAAGAGAAGAACTGAATCTGCTGTCAAGACTCCACCTGTTCGTTCACCAGAGAAGAAAAATGAAGGGTTGGATCTTCTTCCAGCTGAAAAGGTTGGATTATTTTCTGGTTCAGTTACTTCCAACTTTCAGCCGTCAAATCCTACAGTTTCCTCAGGCATTAGTAATGATCCATCTGGTGGTGCTCTCTTTTCTCTAACCACGGGGAAATCTTTATCAGGGATTTCTTCAAATAATCTAGCAACGAAGACAAATGCTTCTTTTGATTCAATTCAGCTGACACAGGCAACCCGGCCAATGAGGAGGCTTTATATTGAAAACTTACCACATTCTCCATCTGAGAAAGCAATCATTGATTGCCTGAATGGTTTTCTTACATCTTCAGGTGTTAATCACATTGAAGGAACCCAGCCATGTATTAGTTGTATTATACACAAAGATAGGGGGCAAGCTCTTGTTGAATTTCTTACGCCTGAGGATGCTTCAGCAGCACTTTCATTTGATGGAAGTGACTTCTCTGGTTCCATTCTAAGGATTCGGCGACCAAAGGATTATGTCGAGCTTGTAACTGGTGACCTGGATAAGTCGGTGGCAGTAGTAAATAAAATCAATGATGTTGTTGAGGACTCACCAAATAAGATTATTATTGCTGGGATCTCTAATAGAATATCATCTGAAATGCTTAAGAATATTGTTGCTGCATTTGGACCTTTGAAGGCCTATCACTTTGAAATCAACAACGATCTTAATGAACCTTGCGCCTTTTTGGAGTATGTTGACCAATCAGTTATGCCCAAAGCTTGTGCTGGTCTAAATGGTATGAAGATTGGAGGGGAAGTACTAAAAGTGTTTCCAGCTGTTCCCATTGCATCGTTGGAACGTAATGGATGTCAACCGTGTTATGGGATTCCAGAGCATGTAAAACCTCTTCTTCAACAGCCAACAGTGGTGTTGAAAGTTAATGTGTTTAATGCAGATGTTCTCCCTTTACTATCTGAGTCAGATATCAACGAAGTTCTTGAAGACATTCGGTTTGAATGTGCCAGGTTTGGGACGGTTAAATCCATGAATGTTGCAAAGCCATGCACTAGCTGTGTCAGTGCTGAAGAAGAATACCAGAGTATTTGTGATATCACTGATGTGGAGATCAAACATGAGATTCAGGAAATCAGCACAATTGTGATTTCAAGAAATGATACTGATCATGATGATAATTGCCTCGATTATACTTATCAGGAGCAAGGTAATTACCCTCACAATGGTAGACATAAAAACGAAGTTGTGGAGGACAAATTGTGTCATATGGGTATCAAGGATGCTACATGTTTCGAAGACGTAGTTTGTAAGAGTGCATTGGAAACAATCCCTCGAGGATGCTGTGACAAGCAGAGCAGCCCAGGAAATGAACTTCATGGTGTAAAAGTTGCCAAAATAATTGAAACTGGCTCAGATGAGAAACCAGTGCTTCTAGGTGATTCAAGTACGGTGGTGGCTGATGATGAGAAGAAAGTTCTACATGGAATGGATCCCATGGTGAGAACAGATTCTGACACATCTGAGAAGAGAGAAAAGAAGGAACGTAATAACAATCTGGAGAGTTCATTTGCGGTGGGGAGCGTTTTTGTTGAGTTTGGTAGATTGGAAGCCTCATGTATGGCTGCGCACTCTTTGCATGGAAGGATTTATGATGGACAAGAGATTAGCGTCGAGTACATTCCTCATGATCTCTATCATAAGAGGTTTCCTAAATGA 2733 40.76 MSTYSCSKQYSRTSAKQCLYNSNDESAARTRPFSFEDIMLRRKNKESAATDGGDTSSQSRRESIDKHITANRESERHFRHSRGSSLDVQNLPLEESAKISSRRKKEETLLKDNMVIRSDRNNYESGLTLIGKLKHDTNGKDKRQKYGQENLGWGKNDERSRIDIENETGKRHSRDAAGKDRRENRGKGKSERESKRKYQHGDDDRNRDRHITKKHDHGKHHDLESKERKEAKISLSSHHEDSRLKKRRKRSLDRQSKHKKSGSLSPRPPKSSTKLARQKELPLDSHVKKSGRWHSDSDRIGDFTNSSSSQYRRHSGLTRSGLGGYSPRKRRTESAVKTPPVRSPEKKNEGLDLLPAEKVGLFSGSVTSNFQPSNPTVSSGISNDPSGGALFSLTTGKSLSGISSNNLATKTNASFDSIQLTQATRPMRRLYIENLPHSPSEKAIIDCLNGFLTSSGVNHIEGTQPCISCIIHKDRGQALVEFLTPEDASAALSFDGSDFSGSILRIRRPKDYVELVTGDLDKSVAVVNKINDVVEDSPNKIIIAGISNRISSEMLKNIVAAFGPLKAYHFEINNDLNEPCAFLEYVDQSVMPKACAGLNGMKIGGEVLKVFPAVPIASLERNGCQPCYGIPEHVKPLLQQPTVVLKVNVFNADVLPLLSESDINEVLEDIRFECARFGTVKSMNVAKPCTSCVSAEEEYQSICDITDVEIKHEIQEISTIVISRNDTDHDDNCLDYTYQEQGNYPHNGRHKNEVVEDKLCHMGIKDATCFEDVVCKSALETIPRGCCDKQSSPGNELHGVKVAKIIETGSDEKPVLLGDSSTVVADDEKKVLHGMDPMVRTDSDTSEKREKKERNNNLESSFAVGSVFVEFGRLEASCMAAHSLHGRIYDGQEISVEYIPHDLYHKRFPK 910
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6677079 6686700 + CmaCh08G010720.1 Cma08g01072 299767

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g01072 910 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 428 511 IPR000504 GO:0003723
Cma08g01072 910 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 539 615 IPR000504 GO:0003723
Cma08g01072 910 Gene3D - 428 610 IPR012677 -
Cma08g01072 910 MobiDBLite consensus disorder prediction 273 299 - -
Cma08g01072 910 Gene3D - 529 588 IPR012677 -
Cma08g01072 910 SUPERFAMILY RNA-binding domain, RBD 414 511 IPR035979 GO:0003676
Cma08g01072 910 PANTHER RNA-BINDING PROTEIN 1 907 - -
Cma08g01072 910 Gene3D - 822 910 IPR012677 -
Cma08g01072 910 MobiDBLite consensus disorder prediction 58 83 - -
Cma08g01072 910 MobiDBLite consensus disorder prediction 835 856 - -
Cma08g01072 910 SUPERFAMILY RNA-binding domain, RBD 537 899 IPR035979 GO:0003676
Cma08g01072 910 MobiDBLite consensus disorder prediction 330 350 - -
Cma08g01072 910 MobiDBLite consensus disorder prediction 134 241 - -
Cma08g01072 910 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 907 - -
Cma08g01072 910 MobiDBLite consensus disorder prediction 35 49 - -
Cma08g01072 910 SMART rrm1_1 540 611 IPR000504 GO:0003723
Cma08g01072 910 SMART rrm1_1 429 507 IPR000504 GO:0003723
Cma08g01072 910 MobiDBLite consensus disorder prediction 131 350 - -
Cma08g01072 910 MobiDBLite consensus disorder prediction 1 108 - -
Cma08g01072 910 MobiDBLite consensus disorder prediction 300 316 - -
Cma08g01072 910 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 541 609 IPR000504 GO:0003723
Cma08g01072 910 MobiDBLite consensus disorder prediction 1 29 - -
Cma08g01072 910 MobiDBLite consensus disorder prediction 242 264 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g01072 K12837 U2AF2; splicing factor U2AF 65 kDa subunit - csv:101213128 1088.56
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma08g01072 Cma17g00150 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00092 Cma-Chr8:478636 Cma08g01072 Cma-Chr8:6677079 7.43E-30 dispersed
Cma08g01072 Cma-Chr8:6677079 Cma17g00575 Cma-Chr17:4738183 5.60E-23 dispersed
Cma17g00150 Cma-Chr17:742914 Cma08g01072 Cma-Chr8:6677079 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g750 Blo01g00297 . . . . . . Bma05g01247 Cmo08g01045 Cmo17g00150 . . . . . . . . . . . . . . Cla06g00680 Cam06g0733 Cec06g0740 Cco06g0749 Clacu06g0725 Cmu06g0709 Cre06g1483 . . . . . Csa02g01043 Chy05g00306 . . . . . Bpe05g01101 . . . Sed04g2009 . . Cma08g01072 Cma17g00150 Car08g00945 Car17g00132 Cpe12g00127 Cpe17g00206 Bhi12g01590 Tan06g2386 Cmetu05g1606 . . . Lcy13g0392 . . . . . . . Lsi09g01218 . . Cme05g00588
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008034 0 1 1 1 1 1 2 1 1 1 1 1 2 1 0 2 1 2 2 1 1 1 2 1 1 2 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma08g01072 Cma_Chr08 FPKM 6.185012 5.729404 8.593347 8.291337 10.384382 9.94393 11.602631 5.655616 5.405196 6.11796