Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g01077 ATGAAGTCCTCGACTCAGCTTGATTTCGCTACTTTTCAGCTCACACCTACTCGAACAAGGTGTGATTTGATATTATCTGCAAATGGGAAGTCCGAGAAAATAGCTTCTGGTTTGTTGAATCCTTTTCTTGCCCATTTGAAGATTGCACAAGAACAGATGGCCAGAGGTGGTTATTCCATTATTCTTGAGCCAGATCCTCACAGTGATAGAATATGGTTCACAAAGGGTACCATGGAGAGGTTTGTCCGATTTGTAAGCACCCCTGAAATTTTGGAAAGGGTGTACACTATTGAGTCAGAGATCTTACAGATTGAGGAGGCAATTGTGATTCAGGGCAACAGTGACATGGGGCCTAATGTTGTAGATGACGAGCAAGGAAAGCCTACAAAGCTTATAGAAGGTGCCACCGAAGCAAGCAAGTCTCTTCTGGATGGTAATGAGGAGAAAGCAATTGTTCTGTACATGCCAGATGCGCACTCACTGGAGACCAATGGACATACAGTGTTAGAGGAGAACTCGAAAGCTCAGCTTCTGAAAGTCCTGGAGACACGCAAAGCTATGCTTCAAAAGGAGCAAGGAATGGCATTTGCTCGTGCTGTTGCTGCTGGTTTTTACATTGATCAGATGTCACCATTGATATCATTTGCCAACAACTTTGGAGCCTCACGATTGATGGATGCATGCGTAAAATTCAAAGAACTATGGAAAAGAAAGCATGAAAGTGGCCAATGGCTCGAAATTGAAGCAGCAGAAGCACTATCCAGCAGGCCAGATTTCTCCCCTTCCATGACTGCATCAGGGATTATACTTACAAGTATGACTGACAAGCAGACAGAATCTCAAATTGAACCATCTTCAACAAATAAGGGGAATGCAATTGCAGATGGAAATCCGCCTATGATATACCAGTCACCACCAGGACACCAAGAGTATCTTCCAGGGCAGTATCCTCCTCATATGTACCCTCCCTGGCCCATCAATTCTCCTCCAGGTTCATTACCTGTCTTCCAAGGATATCCCATGCAAGGAATGCCTTACTATCAGAACTATGCAGGAAGTAGCCCTTTCTTTCATTCGCATTATCCAGTAACAGAGGATTCTAGATTTGGTGACGGTAAGAAAATGGGAGGAAAAAGGCATTCCATGGAAAGTGGAGATAACTCCATTGGACCAGAAACATGTAAGACGAATGCTTGGAAAACAAGAATGCCTGATGATGCAGGATCAGAGCAAGAAGATTCAGAAGATCAGAGAAAAGGTTGTCGATTAGGTAAGAAGAAATCAGGCGTGGTTGTCATCCGCAACATCAACTACATTGCATCGAAGAGGCATAACTCATCAGGCAGTGAAACGGATTCACAATCTGAAAGTGAAAGTGAAGAAGGAGATTCACAGGTTATTAGTCCAGAAATTAAACACAAGAGGCCTAATCAATCCTCTAGGAGCAAAGGAAAGCATCTAAATTTTGGGGATCAATCAAACACTCCTGCAAAAACTGATTCCCCTGAAGCTGAAGGACATTGGCAGGCATTCCAAAACCTTTTACTTCGGGATGCCAATGAAGAAAAACATCATGCTGATCAAAGTCTGTTCACCATGGAAAGGGAAACAAAGCAGAAAAGGCGACAGAATAAAGTTGGTGATGATCCATTAGTTGCTCAGGGATGGAACAGAGATGAAATCCAAGAAAACGGTACTATGGGCATTGATAAAGTTGGTGGAAGAATCAACCGTGTATCAAGAGCATCAAATGATGAATTATTAACTTCCAGAAGAGATAGTCTATCAGGGCATAGCCATATGAATGTGCAGGCTACAGAACTAGATGGAGGAAGAAATGGCTACAGGAGGCCCGGTAGTGATGATTTTGTGGTTTATGGACAAAAGGGTCAAAGTCACTCTAATGGCCACTTGGATCCATTAGCTATAAATGGCTTTGATAATACACAAAAAAGCTATGATAAAAACTCTTCAAATAATTTGGATGGTGGTTCTTACATAGTTCCATTGAGATCAATGACAATGGATGCAGTTGGAAAAGACGGTAGAAGTGCTGTTGACATGGATTCTGAGTTTCCATCTTCAAATCATAAGGCAGAAAACTTGTCCAACAGAGTTGCTACCTATGAGCCAGATGTTCTGAATCTGATGCCAAAGCGTGAAGCAGAAAATGATCCTGCTGGTTATGATCCTGCTTTAGAATATGAAATGCAGGTCCATGCTGGATGCGTACCAGCTTCGGATAAAAAAAAGGAAGTGGTAACTGATGTTAAACAAGGGACTAAAAGGTTGGACAAGGATCGAAAGCCAAAAATTACTCCTGATAGAAAAACTGGGGGGCCAATAAGGAAGGGAAAGCCTTCTAAGTTGAGTCCTTTGGATGAAGCAAGAGCACGTGCTGAAAAGCTAAGAGCTTATAAAGCTGATCTCCGGAGATTGAAGGAGGAGAAGGAGGAGGAGGCAATAAAAAGAATAGAAACTTTGAAGCTAGAGAGGCAGAAGAGAATTGCAGCAAGGGGTAATAGCACATTGCCCTCTCAGCAAACTAGAAAGCTATTGCCAACAAAAATGTCACCCAACTCTCAGAAAGGATCAAAATTTAGTGATTCAGATCCACTATCATCATCTCCTCTGCAAAGGTTCCCAATCAGAACGGCTTCAATTAGTTCCAATGATTCCAACAAAGCTGCAAAACCCAGCAGATTGGTTGGTGGAAAGCAATCAGCTGAAAATAGGTTAACTCAATCTGTATCTTCATTAGCTAAGCTCAAGAAGGATAACAATGATGCTTCAAATGACAAAAAAGTATCCATGGCTCGTATTAGAAGATTATCAGAACCAAAAATGAGCACCAGCGATCATGCTTCTTCCATCAAGATACGGACCACCGAGCCAGCATTAAAGGCAAAAGTAACTAAGGAGACAGAGAACAAAAAAAAGATACCTAATGAGACTGAAAGCAAAAAGAAGATATCTGCTATAATGAATTTGGATAAGATCAAGGCTGCAACTCTTCCAGAACTTAAAATTAGAACGCCTAAGGGACCTGGCGCTACAATTGGCAACTCAATAGGAACTGAAGGTGCTTGTGCTTCCATGGAAAGAAACACGGCTGAAGTCTCACATCATAATGAACTGGATGACAACCCTGTTGTTGAGAAGACTGTTGTTATGCTAGAATGTGAGAAGCCCTCCATCTGTACAGGAAAACCTGATGTCCCATCAGATTTTTCTGCCACCAAGGCTTTTAATTCCCAAATTGAAGTGTCCTGTGTCAATAGAGAATCCATCAAGCAAAAATCACAGGATCAGTTGAGTTCTCATGAGGTGACAGCGGATGGTGCAGATCAGGAAGCACAAAAGTTTTCATCTCCTAGTATTACTGAAAGCATATATAAAGCTCCACACGCCCGTGTATCTTCTTTTGAACATCCTTGCACACGCGTTTCAGAGTATGGAAAAGCAACCCCACCAGATTTGGAGAGTGCAACATCAGGCACTGAAACTGCTAAAGCCTATGTTCCTGATTATGGAAACGCACAATTGGCAAAGATTCCTGAAGCATCAGAGAAGTCTGAGGTAAAAAAATCATCAAAAGGGCTCAGATTATTATTAAAGTTTGGGAGAAAGAATCATAGCTCAGGTACAGATGAACATAATGAGGAATCAGATAATATCAGCGAAAATGATTCTGAAGCCAATGATGTTGGGGCAAATACCACTTCTCACAATGAAGTTCCTACACTGAAAAATCTGATTTCTCAAGACGAAACTCCCACTGCCAGCAAAACTCAGAAGTCTTCTCGTGCATTTTCCCTGCTATCACCTTTCCGAAGCAAGAACAGTGAAAAGAGAAGGCGCAAGCCTGATTGGGTTATGAAGAACGCAACGCTGGTTGCAGCCATGACCACGAACAGAAAAAAAATGGTGTCTCATACTACTCAAGGAATGGAGGAACATCTCTTGGGACAAGTCGAATACCTTTCCATTGTTTCGTTTCTTCTCGAATGTGCTCATTCGATCAACGAGATGTGGGACAGACATCAAGCTTGA 4053 42.07 MKSSTQLDFATFQLTPTRTRCDLILSANGKSEKIASGLLNPFLAHLKIAQEQMARGGYSIILEPDPHSDRIWFTKGTMERFVRFVSTPEILERVYTIESEILQIEEAIVIQGNSDMGPNVVDDEQGKPTKLIEGATEASKSLLDGNEEKAIVLYMPDAHSLETNGHTVLEENSKAQLLKVLETRKAMLQKEQGMAFARAVAAGFYIDQMSPLISFANNFGASRLMDACVKFKELWKRKHESGQWLEIEAAEALSSRPDFSPSMTASGIILTSMTDKQTESQIEPSSTNKGNAIADGNPPMIYQSPPGHQEYLPGQYPPHMYPPWPINSPPGSLPVFQGYPMQGMPYYQNYAGSSPFFHSHYPVTEDSRFGDGKKMGGKRHSMESGDNSIGPETCKTNAWKTRMPDDAGSEQEDSEDQRKGCRLGKKKSGVVVIRNINYIASKRHNSSGSETDSQSESESEEGDSQVISPEIKHKRPNQSSRSKGKHLNFGDQSNTPAKTDSPEAEGHWQAFQNLLLRDANEEKHHADQSLFTMERETKQKRRQNKVGDDPLVAQGWNRDEIQENGTMGIDKVGGRINRVSRASNDELLTSRRDSLSGHSHMNVQATELDGGRNGYRRPGSDDFVVYGQKGQSHSNGHLDPLAINGFDNTQKSYDKNSSNNLDGGSYIVPLRSMTMDAVGKDGRSAVDMDSEFPSSNHKAENLSNRVATYEPDVLNLMPKREAENDPAGYDPALEYEMQVHAGCVPASDKKKEVVTDVKQGTKRLDKDRKPKITPDRKTGGPIRKGKPSKLSPLDEARARAEKLRAYKADLRRLKEEKEEEAIKRIETLKLERQKRIAARGNSTLPSQQTRKLLPTKMSPNSQKGSKFSDSDPLSSSPLQRFPIRTASISSNDSNKAAKPSRLVGGKQSAENRLTQSVSSLAKLKKDNNDASNDKKVSMARIRRLSEPKMSTSDHASSIKIRTTEPALKAKVTKETENKKKIPNETESKKKISAIMNLDKIKAATLPELKIRTPKGPGATIGNSIGTEGACASMERNTAEVSHHNELDDNPVVEKTVVMLECEKPSICTGKPDVPSDFSATKAFNSQIEVSCVNRESIKQKSQDQLSSHEVTADGADQEAQKFSSPSITESIYKAPHARVSSFEHPCTRVSEYGKATPPDLESATSGTETAKAYVPDYGNAQLAKIPEASEKSEVKKSSKGLRLLLKFGRKNHSSGTDEHNEESDNISENDSEANDVGANTTSHNEVPTLKNLISQDETPTASKTQKSSRAFSLLSPFRSKNSEKRRRKPDWVMKNATLVAAMTTNRKKMVSHTTQGMEEHLLGQVEYLSIVSFLLECAHSINEMWDRHQA 1350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6706199 6715340 - CmaCh08G010770.1 Cma08g01077 299772

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g01077 1350 MobiDBLite consensus disorder prediction 405 423 - -
Cma08g01077 1350 PANTHER COP1-INTERACTING PROTEIN-RELATED 1 1282 - -
Cma08g01077 1350 Coils Coil 906 926 - -
Cma08g01077 1350 MobiDBLite consensus disorder prediction 1230 1278 - -
Cma08g01077 1350 MobiDBLite consensus disorder prediction 907 925 - -
Cma08g01077 1350 Coils Coil 793 831 - -
Cma08g01077 1350 MobiDBLite consensus disorder prediction 836 934 - -
Cma08g01077 1350 MobiDBLite consensus disorder prediction 839 897 - -
Cma08g01077 1350 MobiDBLite consensus disorder prediction 1209 1289 - -
Cma08g01077 1350 MobiDBLite consensus disorder prediction 1100 1126 - -
Cma08g01077 1350 PANTHER COP1-INTERACTING PROTEIN-LIKE PROTEIN 1 1282 - -
Cma08g01077 1350 MobiDBLite consensus disorder prediction 368 424 - -
Cma08g01077 1350 MobiDBLite consensus disorder prediction 482 500 - -
Cma08g01077 1350 MobiDBLite consensus disorder prediction 442 504 - -
Cma08g01077 1350 MobiDBLite consensus disorder prediction 754 795 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g01077 - - - csv:101205835 1986.07
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma08g01077 Cma17g00155 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g01077 Cma-Chr8:6706199 Cma09g00882 Cma-Chr9:4340783 5.94E-86 dispersed
Cma17g00155 Cma-Chr17:778455 Cma08g01077 Cma-Chr8:6706199 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g727 Blo01g00089 Blo12g00369 Bda03g00841 Bda08g00276 . . Bma04g00739 . Cmo08g01052 Cmo17g00154 . . . . . . . . . . . . . . Cla06g00675 Cam06g0725 Cec06g0732 Cco06g0741 Clacu06g0716 Cmu06g0701 Cre06g1472 Cone14ag0156 Cone15ag0168 . . . Csa02g01051 Chy05g00312 . . . . . Bpe05g00856 . . . . . . Cma08g01077 Cma17g00155 Car08g00950 Car17g00138 Cpe12g00133 Cpe17g00200 Bhi12g01604 Tan06g2399 . . . . Lcy13g0386 . . . . . . . Lsi09g01225 . . Cme05g00580
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003371 2 3 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 3 1 6 4 1 49
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma08g01077 Cma_Chr08 FPKM 13.895907 16.422029 11.471053 13.0425 8.615124 9.020002 8.325041 12.627522 11.322971 10.81945