Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g01078 ATGGAGCATGTAATCGGTGGGAAGTTTAAGCTGGGCCGGAAGATTGGAAGCGGATCCTTCGGTGAACTGTATTTGGGTACTAATGTGCAAACTGAGGAGGAAGTGGCTGTTAAGCTGGAATCTGTGAAAACCAAGCATCCTCAGCTTCACTATGAGTCAAAACTATATATGCTTCTTCAAGGAGGAACTGGTATACCTCATCTCAAATGGTTTGGAGTTGAGGGTGAGTATAATGTTATGGTTATTGACCTCCTTGGGCCAAGCCTTGAAGATCTGTTCAACTACTGTAATAGGAAACTGTCCTTGAAAACAGTATTGATGCTTGCTGATCAGTTAATAAACAGAGTTGAGTACATGCACTCGCGGGGGTTCCTTCACCGCGACATAAAGCCTGACAACTTTCTAATGGGGTTGGGGCGGAAGGCTAACCAGGTATATATTATCGATTATGGTCTTGCAAAAAAGTATCGGGATCTTCAAACACACAAGCATATACCATACAGAGAAAATAAGAATCTCACAGGAACAGCTCGCTATGCAAGTATTAATACCCATCTTGGAGTTGAGCAAAGCAGAAGGGACGATCTTGAATCTCTCGGCTATGTGCTTATGTATTTTCTCAGGGGAAGCCTTCCCTGGCAGGGTTTGAGAGCAGGGACCAAAAAGCAAAAATATGATAAGATTAGTGAAAAGAAAATGCTCACTCCTATTGAGGTCCTCTGCAAATCTTTTCCAATGGAATTCACATCATACTTCCACTACTGCCGAGCCCTAAGATTTGAAGACAAACCAGATTATTCGTATCTGAAGAGGCTTTTTCGCGATCTTTTCATTAGAGAAGGTTACCAATTTGACTACGTGTTTGACTGGACTATATTGAAATATCCCCAGATCGGCTCCAGTTCAAGGACTCGACCAACTGGGAAAGCCGCTGTAAACCCTGGACCATCTGCTGAAAGAGTGGAGAGACCTTTAGTGGGACAAGATCTCCGCGATAAATTTTCGGGTGCCGTGGAGGCTTTTGCTAGAAGGAATGGCACTGGACATGGTCTACACAGTGATCACTCCAGACACAGATCCTCTGATGATGTGCCTTCCTCCAAGGATGTGCAACCGGATTCGGAAAGAGCACGGAGTTCTTCTCGACAAGGGAGTGCTTCTAAGAGACCTATCTTATCCAGCAGCCGGCCTAGCTCCTCTGGGGAGCCAAGTGAACTCCGCTCAAGCCGACTTTTCTCAAGCAGCAGTCGTCTGTCTGCTTCTACTCAACGAGTTGAGCCAAAATCATCCTTCCTCCGTTCTTCGGTTACAAAAGGCAGCCACGATGATGCCCTTCGAAGCTTTGAACTATTATCGATTGGCACCGGAAAGAAGAAATAA 1380 45.22 MEHVIGGKFKLGRKIGSGSFGELYLGTNVQTEEEVAVKLESVKTKHPQLHYESKLYMLLQGGTGIPHLKWFGVEGEYNVMVIDLLGPSLEDLFNYCNRKLSLKTVLMLADQLINRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYIIDYGLAKKYRDLQTHKHIPYRENKNLTGTARYASINTHLGVEQSRRDDLESLGYVLMYFLRGSLPWQGLRAGTKKQKYDKISEKKMLTPIEVLCKSFPMEFTSYFHYCRALRFEDKPDYSYLKRLFRDLFIREGYQFDYVFDWTILKYPQIGSSSRTRPTGKAAVNPGPSAERVERPLVGQDLRDKFSGAVEAFARRNGTGHGLHSDHSRHRSSDDVPSSKDVQPDSERARSSSRQGSASKRPILSSSRPSSSGEPSELRSSRLFSSSSRLSASTQRVEPKSSFLRSSVTKGSHDDALRSFELLSIGTGKKK 459
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6719781 6725130 - CmaCh08G010780.1 Cma08g01078 299773

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g01078 459 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
Cma08g01078 459 MobiDBLite consensus disorder prediction 345 440 - -
Cma08g01078 459 MobiDBLite consensus disorder prediction 377 437 - -
Cma08g01078 459 Gene3D Transferase(Phosphotransferase) domain 1 1 322 - -
Cma08g01078 459 PANTHER CASEIN KINASE-RELATED 1 444 - -
Cma08g01078 459 MobiDBLite consensus disorder prediction 301 326 - -
Cma08g01078 459 PANTHER CASEIN KINASE I-LIKE PROTEIN 1 444 - -
Cma08g01078 459 MobiDBLite consensus disorder prediction 348 376 - -
Cma08g01078 459 Pfam Protein kinase domain 10 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma08g01078 459 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Cma08g01078 459 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma08g01078 459 SMART serkin_6 9 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma08g01078 459 CDD STKc_CK1_delta_epsilon 8 282 - -
Cma08g01078 459 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g01078 K08960 CSNK1E; casein kinase 1, epsilon [EC:2.7.11.1] - csv:101205364 808.135
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma08g01078 Cma14g01817 CCT
Cma06g01316 Cma08g01078 CCT
Cma08g01078 Cma14g01817 ECH
Cma06g01316 Cma08g01078 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00051 Cma-Chr1:200050 Cma08g01078 Cma-Chr8:6719781 0 dispersed
Cma08g01078 Cma-Chr8:6719781 Cma14g01251 Cma-Chr14:9922057 0 dispersed
Cma14g01817 Cma-Chr14:13014810 Cma08g01078 Cma-Chr8:6719781 0 wgd
Cma19g00101 Cma-Chr19:611081 Cma08g01078 Cma-Chr8:6719781 0 wgd
Cma02g01735 Cma-Chr2:9743857 Cma08g01078 Cma-Chr8:6719781 0 wgd
Cma06g01316 Cma-Chr6:8695431 Cma08g01078 Cma-Chr8:6719781 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g724 . . . . . Bpe14g01261 . . Cmo08g01053 . Cma06g01316 Cma14g01817 Car06g01133 Car14g01629 . Cpe08g00338 Cpe03g01520 Bhi01g00721 . . . . . . Cla06g00672 Cam06g0721 Cec06g0729 Cco06g0737 Clacu06g0712 Cmu06g0698 Cre06g1469 Cone14ag0152 Cone15ag0166 Cone7ag0330 Cone4ag0335 Lsi05g01738 Csa02g01054 Chy05g00315 Cme06g00483 Blo02g00750 Blo07g00269 Bda11g00636 Bda13g00058 . Bpe13g00553 Bma02g00775 Bma06g01604 . Cmo06g01326 Cmo14g01855 Cma08g01078 . Car08g00952 . . Cpe17g00199 Bhi12g01609 Tan06g2404 . . Hepe03g0291 . Lcy13g0383 Cla05g00439 . Cec05g0487 . Clacu05g0474 . . Lsi09g01228 Csa03g01201 Chy06g00465 Cme05g00576
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000454 2 6 4 3 4 3 5 3 3 3 3 2 5 3 3 4 3 8 5 3 3 3 3 3 3 3 3 15 4 2 117
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68771 PF00069 Pkinase 1.20E-25 CL0016 Cma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma08g01078 Cma_Chr08 FPKM 44.218243 48.873379 39.252323 41.048656 28.799608 23.480091 29.905535 30.013866 27.277664 30.184757