Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g01079 ATGGAAGCTACTAGATGTTGGTTTAAGAAGTTCAAATCCAAAGACAATCCAAAGCCCCCTACAAATAAGGAGAGTACAGGCAATGCAAGAGATGCATCCAGAGCACCAACCAGTGAAGAGGTACCCTCCAATGTCACCAAGCAGAAGGTTGCAGCTGCCAAACAGTATATAGAAAACCACTACAAGAAGCAAATGAAGAGCTTGGAAGAAAGGAGGGAGAGACGCCATGTACTAGAAAAGAAGTTGGCTGATGCTGAGGTCTCTCAAGAAGAGCAAAGCAACCTGCTTAAGCATCTAGAGAAGAAGGAAACAGAGTATATGCGTCTTCAGAGGCATAAAATGGGTGCTGATGATTTTGAGCCACTAACAATGATAGGGAGGGGTGCTTTTGGAGAGGTTAGAGTTTGTCGGGAGAAAGCTACTGGCCATGTATATGCCATGAAGAAGCTTAAGAAATCAGAGATGCTTCGAAGAGGCCAGGTTGAGCATGTGAAAGCTGAAAGGAATCTATTGGCGGAGGTTGACAGTAATTGTATTGTAAAGTTGTACTGCTCTTTCCAAGATGAAGAGTATTTATATCTTATTATGGAATACTTACCTGGTGGAGATATGATGACTTTGTTGATGAGGAAAGATACTCTTACAGAAGATGAGGCTCGATTTTATGTTGGTGAAACAGTTTTAGCTATCGAGTCAATCCATAAACATAATTATATTCATAGAGATATCAAACCTGATAACTTGCTTCTTGACAAGGATGGCCATATGAAATTATCAGATTTTGGATTATGTAAACCGTTAGATTGTAGTAACCTCCAAGAAAAAGATTTTTCCCAGGGAAGTAACCTTAGTGGTGCTCTTCAAAGTGATGGGCGTCCTGTGGCATCAAAACGCACACAGCAGGAACAACTACAGCATTGGCAAAGGAACAGGCGGATGCTTGCTTATTCTACAGTTGGAACGCCTGATTATATTGCTCCGGAAGTTCTGCTGAAGAAAGGATATGGAATGGAATGCGATTGGTGGTCACTTGGTGCCATCATGTATGAAATGCTTGTGGGATTTCCACCGTTTTACTCAGATGAGCCTATGTCAACTTGTAGGAAGATAGTTAATTGGAAAACTCATTTGAAATTTCCAGAAGAAGCAAAACTCTCTCCAGAAGCGAAGGATCTAATTAGTAAACTCTTATGCAATGTTGAACAAAGGCTTGGGACCAAGGGTGCAGATGAAATAAAGGCACACCCATGGTTCAAGGGCATCGAGTGGGACAAGTTGTATCAAATGAAAGCTGCATTTATTCCTGAGGTCAATGATGAACTGGATACTCAAAATTTTGAGAAGTTTGAAGAGACTGAAAACTCAATTCAGACGTCATCAAAATCAGGTCCATGGAGAAAGATGCTGTCATCGAAAGATATTAACTTTGTGGGTTACACGTACAAGAACTTTGAAATCATCGATGATAATCAATTGCCTGGAATCGCTGAATTGAAGAAGAAGAGCACAAAATCTAAAAGACCTTCCATCAAATCTCTTTTCGAAAACGAATCTGCAATGGCGACCAATCAACAACCTGTTCAAGGCAGCTTTTTGAAACTCTTGCCTCCCCAACTAGAAGTTCCTGAGAAACCGATGAGTGCCAATGGGAAGCATTCATGA 1662 40.97 MEATRCWFKKFKSKDNPKPPTNKESTGNARDASRAPTSEEVPSNVTKQKVAAAKQYIENHYKKQMKSLEERRERRHVLEKKLADAEVSQEEQSNLLKHLEKKETEYMRLQRHKMGADDFEPLTMIGRGAFGEVRVCREKATGHVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVDSNCIVKLYCSFQDEEYLYLIMEYLPGGDMMTLLMRKDTLTEDEARFYVGETVLAIESIHKHNYIHRDIKPDNLLLDKDGHMKLSDFGLCKPLDCSNLQEKDFSQGSNLSGALQSDGRPVASKRTQQEQLQHWQRNRRMLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGFPPFYSDEPMSTCRKIVNWKTHLKFPEEAKLSPEAKDLISKLLCNVEQRLGTKGADEIKAHPWFKGIEWDKLYQMKAAFIPEVNDELDTQNFEKFEETENSIQTSSKSGPWRKMLSSKDINFVGYTYKNFEIIDDNQLPGIAELKKKSTKSKRPSIKSLFENESAMATNQQPVQGSFLKLLPPQLEVPEKPMSANGKHS 553
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6729107 6736036 - CmaCh08G010790.1 Cma08g01079 299774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g01079 553 PANTHER SERINE/THREONINE-PROTEIN KINASE 41 520 - -
Cma08g01079 553 ProSitePatterns Protein kinases ATP-binding region signature. 125 148 IPR017441 GO:0005524
Cma08g01079 553 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 41 520 - -
Cma08g01079 553 MobiDBLite consensus disorder prediction 1 50 - -
Cma08g01079 553 Gene3D Transferase(Phosphotransferase) domain 1 317 436 - -
Cma08g01079 553 Gene3D Phosphorylase Kinase; domain 1 437 447 - -
Cma08g01079 553 Gene3D Transferase(Phosphotransferase) domain 1 203 269 - -
Cma08g01079 553 SUPERFAMILY Protein kinase-like (PK-like) 94 471 IPR011009 -
Cma08g01079 553 Gene3D Phosphorylase Kinase; domain 1 117 202 - -
Cma08g01079 553 ProSitePatterns Serine/Threonine protein kinases active-site signature. 238 250 IPR008271 GO:0004672|GO:0006468
Cma08g01079 553 ProSiteProfiles Protein kinase domain profile. 119 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma08g01079 553 MobiDBLite consensus disorder prediction 20 50 - -
Cma08g01079 553 Pfam Protein kinase domain 121 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma08g01079 553 Coils Coil 68 102 - -
Cma08g01079 553 CDD STKc_NDR_like 117 482 - -
Cma08g01079 553 Pfam Protein kinase C terminal domain 437 481 IPR017892 GO:0004674|GO:0005524|GO:0006468
Cma08g01079 553 SMART pkinase_C_6 419 483 IPR000961 GO:0004674|GO:0005524|GO:0006468
Cma08g01079 553 SMART serkin_6 119 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma08g01079 553 MobiDBLite consensus disorder prediction 1 19 - -
Cma08g01079 553 ProSiteProfiles AGC-kinase C-terminal domain profile. 419 491 IPR000961 GO:0004674|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma08g01079 Cma17g00158 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01718 Cma-Chr1:11666023 Cma08g01079 Cma-Chr8:6729107 0 dispersed
Cma02g01015 Cma-Chr2:6025152 Cma08g01079 Cma-Chr8:6729107 2.25E-85 dispersed
Cma03g01465 Cma-Chr3:9131488 Cma08g01079 Cma-Chr8:6729107 0 dispersed
Cma05g00185 Cma-Chr5:795624 Cma08g01079 Cma-Chr8:6729107 0 dispersed
Cma08g01079 Cma-Chr8:6729107 Cma17g01322 Cma-Chr17:8912799 0 dispersed
Cma15g01387 Cma-Chr15:8686996 Cma08g01079 Cma-Chr8:6729107 1.25E-79 dispersed
Cma17g00158 Cma-Chr17:800797 Cma08g01079 Cma-Chr8:6729107 0 wgd
Cma08g00274 Cma-Chr8:1598140 Cma08g01079 Cma-Chr8:6729107 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68772 PF00069 Pkinase 7.10E-66 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g01079 K08790 - csv:101205120 1079.7