Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma08g01079 | ATGGAAGCTACTAGATGTTGGTTTAAGAAGTTCAAATCCAAAGACAATCCAAAGCCCCCTACAAATAAGGAGAGTACAGGCAATGCAAGAGATGCATCCAGAGCACCAACCAGTGAAGAGGTACCCTCCAATGTCACCAAGCAGAAGGTTGCAGCTGCCAAACAGTATATAGAAAACCACTACAAGAAGCAAATGAAGAGCTTGGAAGAAAGGAGGGAGAGACGCCATGTACTAGAAAAGAAGTTGGCTGATGCTGAGGTCTCTCAAGAAGAGCAAAGCAACCTGCTTAAGCATCTAGAGAAGAAGGAAACAGAGTATATGCGTCTTCAGAGGCATAAAATGGGTGCTGATGATTTTGAGCCACTAACAATGATAGGGAGGGGTGCTTTTGGAGAGGTTAGAGTTTGTCGGGAGAAAGCTACTGGCCATGTATATGCCATGAAGAAGCTTAAGAAATCAGAGATGCTTCGAAGAGGCCAGGTTGAGCATGTGAAAGCTGAAAGGAATCTATTGGCGGAGGTTGACAGTAATTGTATTGTAAAGTTGTACTGCTCTTTCCAAGATGAAGAGTATTTATATCTTATTATGGAATACTTACCTGGTGGAGATATGATGACTTTGTTGATGAGGAAAGATACTCTTACAGAAGATGAGGCTCGATTTTATGTTGGTGAAACAGTTTTAGCTATCGAGTCAATCCATAAACATAATTATATTCATAGAGATATCAAACCTGATAACTTGCTTCTTGACAAGGATGGCCATATGAAATTATCAGATTTTGGATTATGTAAACCGTTAGATTGTAGTAACCTCCAAGAAAAAGATTTTTCCCAGGGAAGTAACCTTAGTGGTGCTCTTCAAAGTGATGGGCGTCCTGTGGCATCAAAACGCACACAGCAGGAACAACTACAGCATTGGCAAAGGAACAGGCGGATGCTTGCTTATTCTACAGTTGGAACGCCTGATTATATTGCTCCGGAAGTTCTGCTGAAGAAAGGATATGGAATGGAATGCGATTGGTGGTCACTTGGTGCCATCATGTATGAAATGCTTGTGGGATTTCCACCGTTTTACTCAGATGAGCCTATGTCAACTTGTAGGAAGATAGTTAATTGGAAAACTCATTTGAAATTTCCAGAAGAAGCAAAACTCTCTCCAGAAGCGAAGGATCTAATTAGTAAACTCTTATGCAATGTTGAACAAAGGCTTGGGACCAAGGGTGCAGATGAAATAAAGGCACACCCATGGTTCAAGGGCATCGAGTGGGACAAGTTGTATCAAATGAAAGCTGCATTTATTCCTGAGGTCAATGATGAACTGGATACTCAAAATTTTGAGAAGTTTGAAGAGACTGAAAACTCAATTCAGACGTCATCAAAATCAGGTCCATGGAGAAAGATGCTGTCATCGAAAGATATTAACTTTGTGGGTTACACGTACAAGAACTTTGAAATCATCGATGATAATCAATTGCCTGGAATCGCTGAATTGAAGAAGAAGAGCACAAAATCTAAAAGACCTTCCATCAAATCTCTTTTCGAAAACGAATCTGCAATGGCGACCAATCAACAACCTGTTCAAGGCAGCTTTTTGAAACTCTTGCCTCCCCAACTAGAAGTTCCTGAGAAACCGATGAGTGCCAATGGGAAGCATTCATGA | 1662 | 40.97 | MEATRCWFKKFKSKDNPKPPTNKESTGNARDASRAPTSEEVPSNVTKQKVAAAKQYIENHYKKQMKSLEERRERRHVLEKKLADAEVSQEEQSNLLKHLEKKETEYMRLQRHKMGADDFEPLTMIGRGAFGEVRVCREKATGHVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVDSNCIVKLYCSFQDEEYLYLIMEYLPGGDMMTLLMRKDTLTEDEARFYVGETVLAIESIHKHNYIHRDIKPDNLLLDKDGHMKLSDFGLCKPLDCSNLQEKDFSQGSNLSGALQSDGRPVASKRTQQEQLQHWQRNRRMLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGFPPFYSDEPMSTCRKIVNWKTHLKFPEEAKLSPEAKDLISKLLCNVEQRLGTKGADEIKAHPWFKGIEWDKLYQMKAAFIPEVNDELDTQNFEKFEETENSIQTSSKSGPWRKMLSSKDINFVGYTYKNFEIIDDNQLPGIAELKKKSTKSKRPSIKSLFENESAMATNQQPVQGSFLKLLPPQLEVPEKPMSANGKHS | 553 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 6729107 | 6736036 | - | CmaCh08G010790.1 | Cma08g01079 | 299774 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma08g01079 | 553 | PANTHER | SERINE/THREONINE-PROTEIN KINASE | 41 | 520 | - | - | |
Cma08g01079 | 553 | ProSitePatterns | Protein kinases ATP-binding region signature. | 125 | 148 | IPR017441 | GO:0005524 | |
Cma08g01079 | 553 | PANTHER | NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE | 41 | 520 | - | - | |
Cma08g01079 | 553 | MobiDBLite | consensus disorder prediction | 1 | 50 | - | - | |
Cma08g01079 | 553 | Gene3D | Transferase(Phosphotransferase) domain 1 | 317 | 436 | - | - | |
Cma08g01079 | 553 | Gene3D | Phosphorylase Kinase; domain 1 | 437 | 447 | - | - | |
Cma08g01079 | 553 | Gene3D | Transferase(Phosphotransferase) domain 1 | 203 | 269 | - | - | |
Cma08g01079 | 553 | SUPERFAMILY | Protein kinase-like (PK-like) | 94 | 471 | IPR011009 | - | |
Cma08g01079 | 553 | Gene3D | Phosphorylase Kinase; domain 1 | 117 | 202 | - | - | |
Cma08g01079 | 553 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 238 | 250 | IPR008271 | GO:0004672|GO:0006468 | |
Cma08g01079 | 553 | ProSiteProfiles | Protein kinase domain profile. | 119 | 418 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma08g01079 | 553 | MobiDBLite | consensus disorder prediction | 20 | 50 | - | - | |
Cma08g01079 | 553 | Pfam | Protein kinase domain | 121 | 418 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma08g01079 | 553 | Coils | Coil | 68 | 102 | - | - | |
Cma08g01079 | 553 | CDD | STKc_NDR_like | 117 | 482 | - | - | |
Cma08g01079 | 553 | Pfam | Protein kinase C terminal domain | 437 | 481 | IPR017892 | GO:0004674|GO:0005524|GO:0006468 | |
Cma08g01079 | 553 | SMART | pkinase_C_6 | 419 | 483 | IPR000961 | GO:0004674|GO:0005524|GO:0006468 | |
Cma08g01079 | 553 | SMART | serkin_6 | 119 | 418 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma08g01079 | 553 | MobiDBLite | consensus disorder prediction | 1 | 19 | - | - | |
Cma08g01079 | 553 | ProSiteProfiles | AGC-kinase C-terminal domain profile. | 419 | 491 | IPR000961 | GO:0004674|GO:0005524|GO:0006468 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma08g01079 | Cma17g00158 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma01g01718 | Cma-Chr1:11666023 | Cma08g01079 | Cma-Chr8:6729107 | 0 | dispersed | |
Cma02g01015 | Cma-Chr2:6025152 | Cma08g01079 | Cma-Chr8:6729107 | 2.25E-85 | dispersed | |
Cma03g01465 | Cma-Chr3:9131488 | Cma08g01079 | Cma-Chr8:6729107 | 0 | dispersed | |
Cma05g00185 | Cma-Chr5:795624 | Cma08g01079 | Cma-Chr8:6729107 | 0 | dispersed | |
Cma08g01079 | Cma-Chr8:6729107 | Cma17g01322 | Cma-Chr17:8912799 | 0 | dispersed | |
Cma15g01387 | Cma-Chr15:8686996 | Cma08g01079 | Cma-Chr8:6729107 | 1.25E-79 | dispersed | |
Cma17g00158 | Cma-Chr17:800797 | Cma08g01079 | Cma-Chr8:6729107 | 0 | wgd | |
Cma08g00274 | Cma-Chr8:1598140 | Cma08g01079 | Cma-Chr8:6729107 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
68772 | PF00069 | Pkinase | 7.10E-66 | CL0016 | Cma | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma08g01079 | K08790 | - | csv:101205120 | 1079.7 |