Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma08g01086 | ATGACTTCTTCATTATTTCACTGCCAAGACTCCGACTTCTCGCCGGAATCTTCCTTGAGCTCCTTCGAATCTCTCCGATGGGAAGCTTTTCAAACAAACGACAACTCTCTGCTCTTTAACGAGAATGATTCCGGCGAAATGCTCCTTCACAACTTGATCTCAGAGCCCACCTCGTACCCGCCGGCGAATTCTCTCCGGCAGGACCCGATCAAGGAAGAGGAGGTTGATTCGCTCGGAGAAGAAGAACCCCACAAGCCAAAATCCTACAGAGGAGTCCGCCGGCGTCCATGGGGGAAATTCGCGGCGGAGATACGGGATTCAACTAGGCATGGAGTTCGGGTTTGGCTCGGAACGTTCGATAGCGCCGAGGCGGCTGCTTTGGCTTATGATCAAGCCGCTTTCTCGATGCGGGGCGCGGCCGCTGTTCTCAATTTTCCAGTGGAAAGAGTTCAGGAATCTCTCAAGGAGATGGAAATGATCAACTCCGCCGCATACGGCGGAGACGGCGAATCTCCGGTGGTTGCTTTGAAGAGAAAACATTCTATGAGGAATAAATCAAGAAGGAGAAAGAGTAAAAATAAAGAAGACATTGGGAAAACAGAGAGTAATGTGGTTGTTTTAGAAGATCTTGGCTCTGATTATTTGGAAGAACTCTTGGAGCTATCTGAGAATCTCCGGCCATGGTGA | 687 | 49.78 | MTSSLFHCQDSDFSPESSLSSFESLRWEAFQTNDNSLLFNENDSGEMLLHNLISEPTSYPPANSLRQDPIKEEEVDSLGEEEPHKPKSYRGVRRRPWGKFAAEIRDSTRHGVRVWLGTFDSAEAAALAYDQAAFSMRGAAAVLNFPVERVQESLKEMEMINSAAYGGDGESPVVALKRKHSMRNKSRRRKSKNKEDIGKTESNVVVLEDLGSDYLEELLELSENLRPW | 228 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 6782139 | 6782825 | - | CmaCh08G010860.1 | Cma08g01086 | 299781 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma08g01086 | 228 | SUPERFAMILY | DNA-binding domain | 88 | 148 | IPR016177 | GO:0003677 | |
Cma08g01086 | 228 | CDD | AP2 | 87 | 147 | IPR001471 | GO:0003700|GO:0006355 | |
Cma08g01086 | 228 | Gene3D | AP2/ERF domain | 87 | 148 | IPR036955 | GO:0003700|GO:0006355 | |
Cma08g01086 | 228 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B | 29 | 221 | - | - | |
Cma08g01086 | 228 | SMART | rav1_2 | 88 | 152 | IPR001471 | GO:0003700|GO:0006355 | |
Cma08g01086 | 228 | MobiDBLite | consensus disorder prediction | 177 | 198 | - | - | |
Cma08g01086 | 228 | Pfam | AP2 domain | 88 | 138 | IPR001471 | GO:0003700|GO:0006355 | |
Cma08g01086 | 228 | PANTHER | DNA-BINDING DOMAIN | 29 | 221 | IPR044808 | GO:0003700|GO:0009873 | |
Cma08g01086 | 228 | PRINTS | Ethylene responsive element binding protein signature | 89 | 100 | IPR001471 | GO:0003700|GO:0006355 | |
Cma08g01086 | 228 | PRINTS | Ethylene responsive element binding protein signature | 112 | 128 | IPR001471 | GO:0003700|GO:0006355 | |
Cma08g01086 | 228 | ProSiteProfiles | AP2/ERF domain profile. | 88 | 146 | IPR001471 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma08g01086 | Cma-Chr8:6782139 | Cma07g00206 | Cma-Chr7:957489 | 4.93E-34 | dispersed | |
Cma14g01810 | Cma-Chr14:12979490 | Cma08g01086 | Cma-Chr8:6782139 | 8.12E-62 | wgd | |
Cma17g00167 | Cma-Chr17:862949 | Cma08g01086 | Cma-Chr8:6782139 | 3.32E-104 | wgd | |
Cma19g00084 | Cma-Chr19:506769 | Cma08g01086 | Cma-Chr8:6782139 | 7.99E-46 | wgd | |
Cma02g01751 | Cma-Chr2:9801242 | Cma08g01086 | Cma-Chr8:6782139 | 9.06E-46 | wgd | |
Cma06g01330 | Cma-Chr6:8751295 | Cma08g01086 | Cma-Chr8:6782139 | 8.79E-66 | wgd | |
Cma08g00294 | Cma-Chr8:1686346 | Cma08g01086 | Cma-Chr8:6782139 | 8.79E-42 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35551 | PF00847 | AP2 | 1.10E-14 | CL0081 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma08g01086 | K14516 | - | csv:101206564 | 317.775 |