Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g01086 ATGACTTCTTCATTATTTCACTGCCAAGACTCCGACTTCTCGCCGGAATCTTCCTTGAGCTCCTTCGAATCTCTCCGATGGGAAGCTTTTCAAACAAACGACAACTCTCTGCTCTTTAACGAGAATGATTCCGGCGAAATGCTCCTTCACAACTTGATCTCAGAGCCCACCTCGTACCCGCCGGCGAATTCTCTCCGGCAGGACCCGATCAAGGAAGAGGAGGTTGATTCGCTCGGAGAAGAAGAACCCCACAAGCCAAAATCCTACAGAGGAGTCCGCCGGCGTCCATGGGGGAAATTCGCGGCGGAGATACGGGATTCAACTAGGCATGGAGTTCGGGTTTGGCTCGGAACGTTCGATAGCGCCGAGGCGGCTGCTTTGGCTTATGATCAAGCCGCTTTCTCGATGCGGGGCGCGGCCGCTGTTCTCAATTTTCCAGTGGAAAGAGTTCAGGAATCTCTCAAGGAGATGGAAATGATCAACTCCGCCGCATACGGCGGAGACGGCGAATCTCCGGTGGTTGCTTTGAAGAGAAAACATTCTATGAGGAATAAATCAAGAAGGAGAAAGAGTAAAAATAAAGAAGACATTGGGAAAACAGAGAGTAATGTGGTTGTTTTAGAAGATCTTGGCTCTGATTATTTGGAAGAACTCTTGGAGCTATCTGAGAATCTCCGGCCATGGTGA 687 49.78 MTSSLFHCQDSDFSPESSLSSFESLRWEAFQTNDNSLLFNENDSGEMLLHNLISEPTSYPPANSLRQDPIKEEEVDSLGEEEPHKPKSYRGVRRRPWGKFAAEIRDSTRHGVRVWLGTFDSAEAAALAYDQAAFSMRGAAAVLNFPVERVQESLKEMEMINSAAYGGDGESPVVALKRKHSMRNKSRRRKSKNKEDIGKTESNVVVLEDLGSDYLEELLELSENLRPW 228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6782139 6782825 - CmaCh08G010860.1 Cma08g01086 299781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g01086 228 SUPERFAMILY DNA-binding domain 88 148 IPR016177 GO:0003677
Cma08g01086 228 CDD AP2 87 147 IPR001471 GO:0003700|GO:0006355
Cma08g01086 228 Gene3D AP2/ERF domain 87 148 IPR036955 GO:0003700|GO:0006355
Cma08g01086 228 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 29 221 - -
Cma08g01086 228 SMART rav1_2 88 152 IPR001471 GO:0003700|GO:0006355
Cma08g01086 228 MobiDBLite consensus disorder prediction 177 198 - -
Cma08g01086 228 Pfam AP2 domain 88 138 IPR001471 GO:0003700|GO:0006355
Cma08g01086 228 PANTHER DNA-BINDING DOMAIN 29 221 IPR044808 GO:0003700|GO:0009873
Cma08g01086 228 PRINTS Ethylene responsive element binding protein signature 89 100 IPR001471 GO:0003700|GO:0006355
Cma08g01086 228 PRINTS Ethylene responsive element binding protein signature 112 128 IPR001471 GO:0003700|GO:0006355
Cma08g01086 228 ProSiteProfiles AP2/ERF domain profile. 88 146 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g01086 Cma-Chr8:6782139 Cma07g00206 Cma-Chr7:957489 4.93E-34 dispersed
Cma14g01810 Cma-Chr14:12979490 Cma08g01086 Cma-Chr8:6782139 8.12E-62 wgd
Cma17g00167 Cma-Chr17:862949 Cma08g01086 Cma-Chr8:6782139 3.32E-104 wgd
Cma19g00084 Cma-Chr19:506769 Cma08g01086 Cma-Chr8:6782139 7.99E-46 wgd
Cma02g01751 Cma-Chr2:9801242 Cma08g01086 Cma-Chr8:6782139 9.06E-46 wgd
Cma06g01330 Cma-Chr6:8751295 Cma08g01086 Cma-Chr8:6782139 8.79E-66 wgd
Cma08g00294 Cma-Chr8:1686346 Cma08g01086 Cma-Chr8:6782139 8.79E-42 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35551 PF00847 AP2 1.10E-14 CL0081 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g01086 K14516 - csv:101206564 317.775