Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g01087 ATGGACGTGGAAGGGATGTCCGGCAATGATCAGGGTGGCGAGGTTCGATACCGTGGAGTGCGGCGGCGTCCATGGGGGAAGTTTGCTTCTGAGATTCGTGACTCGTCGAGACACGGGGCTCGGGTTTGGCTTGGAACTTTCAACACGGCGGAGGAGGCAGCTCGGGCCTATGACCGAGCTGCCTATGCCATGCGTGGTCATTTGGCTGTCTTGAATTTTCCTAATGAATATCCATCTCTCGGTGGCAGTTCTTCTTCCTCTTCTGGTCTAGCTCCGAGGCGCCATGGCCCGAGTGAGCACCAAGTGATTGAATTTGAATGTGTCGATGATAGGATACTGGAAGAGCTTCTTGAGTATGAGGAGAAAAGGAAGAAGATGTGA 381 53.28 MDVEGMSGNDQGGEVRYRGVRRRPWGKFASEIRDSSRHGARVWLGTFNTAEEAARAYDRAAYAMRGHLAVLNFPNEYPSLGGSSSSSSGLAPRRHGPSEHQVIEFECVDDRILEELLEYEEKRKKM 126
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6789716 6790096 - CmaCh08G010870.1 Cma08g01087 299782

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g01087 126 Pfam AP2 domain 16 67 IPR001471 GO:0003700|GO:0006355
Cma08g01087 126 SUPERFAMILY DNA-binding domain 16 75 IPR016177 GO:0003677
Cma08g01087 126 Gene3D AP2/ERF domain 15 75 IPR036955 GO:0003700|GO:0006355
Cma08g01087 126 PANTHER DNA-BINDING DOMAIN 10 121 IPR044808 GO:0003700|GO:0009873
Cma08g01087 126 ProSiteProfiles AP2/ERF domain profile. 16 74 IPR001471 GO:0003700|GO:0006355
Cma08g01087 126 CDD AP2 16 75 IPR001471 GO:0003700|GO:0006355
Cma08g01087 126 PANTHER OS09G0571700 PROTEIN 10 121 - -
Cma08g01087 126 PRINTS Ethylene responsive element binding protein signature 17 28 IPR001471 GO:0003700|GO:0006355
Cma08g01087 126 PRINTS Ethylene responsive element binding protein signature 40 56 IPR001471 GO:0003700|GO:0006355
Cma08g01087 126 SMART rav1_2 16 80 IPR001471 GO:0003700|GO:0006355
Cma08g01087 126 MobiDBLite consensus disorder prediction 80 99 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g01087 - - - csv:101206390 162.155
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma08g01087 Cma14g01808 CCT
Cma06g01331 Cma08g01087 CCT
Cma06g01331 Cma08g01087 ECH
Cma08g01087 Cma14g01808 ECH
Cma08g01087 Cma17g00168 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g01087 Cma-Chr8:6789716 Cma14g01809 Cma-Chr14:12975550 1.08E-38 dispersed
Cma14g01808 Cma-Chr14:12973474 Cma08g01087 Cma-Chr8:6789716 1.18E-32 wgd
Cma17g00168 Cma-Chr17:871300 Cma08g01087 Cma-Chr8:6789716 3.71E-47 wgd
Cma06g01331 Cma-Chr6:8758120 Cma08g01087 Cma-Chr8:6789716 3.92E-34 wgd
Cma08g00295 Cma-Chr8:1690893 Cma08g01087 Cma-Chr8:6789716 6.82E-44 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g675 . Blo12g00365 Bda03g00843 Bda08g00272 Bpe04g00797 Bpe14g01246 . Bma05g01069 Cmo08g01063 . Cma06g01331 Cma14g01808 Car06g01142 Car14g01624 . Cpe08g00329 Cpe03g01512 Bhi01g00724 . . . . . . Cla06g00656 Cam06g0701 Cec06g0706 Cco06g0714 Clacu06g0689 Cmu06g0680 Cre06g1449 . . Cone7ag0317 Cone4ag0322 Lsi05g01724 Csa02g01072 Chy05g00332 Cme06g00502 . Blo07g00256 Bda11g00626 Bda13g00070 Bpe05g00860 Bpe13g00562 Bma02g00791 . Sed02g1402 Cmo06g01335 Cmo14g01844 Cma08g01087 Cma17g00168 Car08g00962 Car17g00147 . Cpe17g00191 Bhi12g01631 Tan06g2419 Cmetu06g0922 Lac12g2186 Hepe03g0273 . Lcy13g0366 Cla05g00453 Cam05g0494 Cec05g0503 Cco05g0502 Clacu05g0489 Cmu05g0466 Cre05g0529 Lsi09g01241 Csa03g01218 Chy06g00481 Cme05g00555
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000583 4 2 2 3 4 4 2 4 4 4 4 4 5 4 4 4 4 3 3 4 4 4 2 3 4 4 3 5 3 2 106
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35552 PF00847 AP2 7.90E-16 CL0081 Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma08g01087 Cma_Chr08 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0