Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g01091 ATGGAGACGGCGGCGGAAGGTCGGAGTTCGGCGGAGAAGCTTTCAGTCAACCACGCCTACGACCGGCAAAGAGAATTGAAAGCTTTAGACGAATCAAAATTAGGGGTAAAAGGACTGGTGGACTCGGGCTTGACGAACCTCCCAAAAATCTTCCTCCACCAAAACCAGAAGTCCTCCTCCACGGCCGCCCTACCATCGGACGACTCCCGTTTCACCATCCCCATCATCGATCTTCACTCAACGGCCCAAAACCCCCAATTGCGATCCATCATAATCGACCAAATCCGAGACGCTTCCGAAAATTGGGGGTTCTTCCAAATCCTCAACCACGGCGTCCCCTCAACCGTCACGGCGGAGATGCTCGCCGGAATCCGACGGTTCCACGAGCAAGATGGCGAACAAAAGACGCAATTCTACTCTCGCGACTACACCAAAACGGTACTCTACAACACCAATTTCGATCTCTACAAAGCCCCTGTTACAAATTGGAGAGACACACTAACCTGCGCGATCGCCCCACGAGGGGCCGAATCCAAAGACATGCCCTTAATCTGTAGGGACATAATCCTTAATTACACCAAAAGGGTACTCGAATTAGGGAAAACCCTATTCGAATTGGTGTCCGAAGCTCTAGGGCTCGGCCCCAATCGGTTGAACGAAATCGGCTGCGGCGAGGGGCTTGTCCTCTTCGGTCATTACTACCCAGCCTGCCCTGAACCAGAGCTCGCAATTGGAACCAGCGACCACTCCGACAGCAGTTTCTTAACCGTGCTTTTACAGGACCAAATCGGCGGGCTTCAAGTCCGCCATGATGACCGGTGGGTTGATGTCCGGCCAATCGACGGCGCGCTTGTGATAAACATCGGCGATATGTTACAGCTTGTTTCGAATGGTCGATTGAAGAGCGTGAATCATAGGGTGCTGGCGAAAAGTGAAGGGGCGAGGATATCGGTGGCGTGTTTTTTCAGGTACCAGTTTCCGCCGGAGAGTGAGAGGAAGGTTTATGGGCCGATAAAGGAGTTGATTTCGGAGGAGAAGCCGGCGGTTTATAGAGAAACGACGATCAAGAACTTTGTGGCGCATTATTATACTAAAGGGCTTAATGGGGTCTCTGCGCTTGAACAGTTCAAGCTTTGA 1137 52.07 METAAEGRSSAEKLSVNHAYDRQRELKALDESKLGVKGLVDSGLTNLPKIFLHQNQKSSSTAALPSDDSRFTIPIIDLHSTAQNPQLRSIIIDQIRDASENWGFFQILNHGVPSTVTAEMLAGIRRFHEQDGEQKTQFYSRDYTKTVLYNTNFDLYKAPVTNWRDTLTCAIAPRGAESKDMPLICRDIILNYTKRVLELGKTLFELVSEALGLGPNRLNEIGCGEGLVLFGHYYPACPEPELAIGTSDHSDSSFLTVLLQDQIGGLQVRHDDRWVDVRPIDGALVINIGDMLQLVSNGRLKSVNHRVLAKSEGARISVACFFRYQFPPESERKVYGPIKELISEEKPAVYRETTIKNFVAHYYTKGLNGVSALEQFKL 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6804306 6806000 - CmaCh08G010910.1 Cma08g01091 299786

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g01091 378 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 225 326 IPR005123 -
Cma08g01091 378 Pfam non-haem dioxygenase in morphine synthesis N-terminal 73 173 IPR026992 -
Cma08g01091 378 PANTHER 2OG-FE(II) OXYGENASE FAMILY OXIDOREDUCTASE 16 377 - -
Cma08g01091 378 PANTHER OXIDOREDUCTASE, 2OG-FE II OXYGENASE FAMILY PROTEIN 16 377 - -
Cma08g01091 378 Gene3D - 26 361 IPR027443 -
Cma08g01091 378 SUPERFAMILY Clavaminate synthase-like 33 368 - -
Cma08g01091 378 Pfam 2OG-Fe(II) oxygenase superfamily 231 323 IPR044861 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g01091 - - - cmax:111494760 758.444
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00074 Cma-Chr4:355022 Cma08g01091 Cma-Chr8:6804306 4.64E-111 dispersed
Cma08g01091 Cma-Chr8:6804306 Cma14g01803 Cma-Chr14:12961404 2.39E-150 dispersed
Cma08g01090 Cma-Chr8:6798791 Cma08g01091 Cma-Chr8:6804306 6.67E-57 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g668 . . . . . . . Bma05g01073 Cmo08g01066 . . . Car06g01145 . . . . . . . . . . . . . . . . . . . . . . . Csa02g01076 Chy05g00336 Cme06g00508 . . . . Bpe05g00863 Bpe13g00564 . . . Cmo06g01338 . Cma08g01091 . Car08g00966 . . . . . . . . . . . . . . . . . Lsi09g01246 Csa03g01223 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000120 1 1 3 2 2 1 5 9 8 1 3 7 6 4 12 8 7 4 4 8 9 14 11 13 12 12 11 13 13 18 222
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma08g01091 Cma_Chr08 FPKM 17.294777 17.172367 13.256755 13.921798 9.32799 8.141258 8.301253 17.817976 17.062925 16.510071