Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g01095 ATGGTTGCAGAGCCTTGGATTGTGAAAATGGGGAACCAGGTTAGCGCTAATCTCAAGCAAGCCCTTCTCGAACCTTCAAAGAATAAGAGCAATACTAAGCAAACAATCGATATTCTCTCTTTTGAAGTTGCTAATGTAATGTCCAAAACGATTTACCTTCATAAATCCCTGTCTGATTCGGCCATTTCAAAGCTCAAGAACGACATCTTGAGCTCTGATGGAGTTAGGAACCTCGTGTCCTTTGATGAGGTTCATCTTCTCGAGCTTGTGGTTGCAGAGAAGCTGGAGGATTTGAACCGAGTGGCTCATGTGGTTTCTAGGCTTGGGAAGAAGTGTTCTCAACCTGCGTTACAGGGTTTTGAACATGTTTATCTGGATATCATTAATGGGGTTATAAATGTGAAGGAATTGGGGTTTTTGGTTAAGGATATGGAAGGGATGATGAAGAAAATGGAGAGGTTTGTGAATGCTACGGCCAATTTGTACACTGAAATGGAGGTTTTGAATGAATTGGAACAGGCTGCTAAGAAGTTTCAGAATAATCAACATGAAGAGAGTAGAAAAGCTTATGAACAGAAACTTATATGGCAGAAACAAGACGTGGGGCATCTCAAAGAGATTTCTCTTTGGAACCAAACCTTTGATAAGGTTGTTGAATTGCTAGCTAGAACTGTTTGTACTGTTTATGCAAGGATTCATTTGGTATTTGGAGACTCTTTTCTGAAGAAGGATGTTGAGATTGGTTCAGAGTCATTGGAATCGAAGCGTGTGTCACGCCCCGGACCGAGACGAGGCTCGAGTTTCAAGTCTCAAATTAGCACAAGAAGAGGCGAGGTTCCGTTGTTTACACCTGATGACTTCAATTTCCCTTGCGGAACCAATCCCGGGAGGCTTTTGATGGATTGTCTCAGTTTAAGTAGTTCAGTTTCCAAGAGGGATGAGGAGGAGGAGGAGGACGAGAACGGTTATGATGATCGGAGCTTCCGAATCTCCGGTTGTAGCATTAGGAATAGTGGCTCGAGTCATTTCGGTTCGTTCAGTCAGGTCCAGTTCTCTGTTCCATTTGGGGTAGAGCAAAGACAAGCCAAAAGTGTGATGTCTAACAATGGAGGAAGTTTTGGATTCAAGAGTAGGTTATCTGTCTATGCCCCGGTTTCGACTGTTGGAGGCTCGGCTCTTGCTTTGCATTATGCCAATATCATCATTGTCATAGAAAAGTTGCTTCGTTATCCTCATTTAGTTGGAGACGAAGCTCGGGACGATTTGTATCAGATGCTACCAACGAGTTTAAGAACATCCCTGAATAAACATCTGAAGTCCTATGTTAAGAGCCTAGCCATATATGATGCTCCGCTTGCGCATGATTGGAAGGAGACACTCGACGGGATCTTGAGCTGGCTTGCTCCATTGGCACACAATATGATTCGATGGCAAAGCGAGCGCAATTTCGAACAACATCAGATTGTGACACGGACTAACGTTTTGCTAATCCAAACTATTTACTTCGCTGATTGCAAGAAAACCGAGGACGCCATATGTGAGCTTCTTGTTGGATTGAATTACATTTGTCGTTACGAGCATCAGCAAAATGCATTGCTGGATTGCGCGAGTAGTTTCGACTTCGAAGATTGTATGGAGTGGCAGTTGCAATGTAAAGCTTCATATCTTAGTTGA 1674 43.19 MVAEPWIVKMGNQVSANLKQALLEPSKNKSNTKQTIDILSFEVANVMSKTIYLHKSLSDSAISKLKNDILSSDGVRNLVSFDEVHLLELVVAEKLEDLNRVAHVVSRLGKKCSQPALQGFEHVYLDIINGVINVKELGFLVKDMEGMMKKMERFVNATANLYTEMEVLNELEQAAKKFQNNQHEESRKAYEQKLIWQKQDVGHLKEISLWNQTFDKVVELLARTVCTVYARIHLVFGDSFLKKDVEIGSESLESKRVSRPGPRRGSSFKSQISTRRGEVPLFTPDDFNFPCGTNPGRLLMDCLSLSSSVSKRDEEEEEDENGYDDRSFRISGCSIRNSGSSHFGSFSQVQFSVPFGVEQRQAKSVMSNNGGSFGFKSRLSVYAPVSTVGGSALALHYANIIIVIEKLLRYPHLVGDEARDDLYQMLPTSLRTSLNKHLKSYVKSLAIYDAPLAHDWKETLDGILSWLAPLAHNMIRWQSERNFEQHQIVTRTNVLLIQTIYFADCKKTEDAICELLVGLNYICRYEHQQNALLDCASSFDFEDCMEWQLQCKASYLS 557
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6821815 6823488 + CmaCh08G010950.1 Cma08g01095 299790

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g01095 557 MobiDBLite consensus disorder prediction 251 272 - -
Cma08g01095 557 Pfam Domain of unknown function (DUF3475) 38 94 IPR021864 GO:0045927
Cma08g01095 557 Pfam Protein of unknown function (DUF668) 387 476 IPR007700 GO:0045927
Cma08g01095 557 PANTHER PLANT/PROTEIN (DUF668) 1 551 - -
Cma08g01095 557 PANTHER BNAC09G50660D PROTEIN 1 551 - -
Cma08g01095 557 Coils Coil 168 188 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g01095 - - - csv:101220789 962.214
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma08g01095 Cma17g00175 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02534 Cma-Chr4:17365265 Cma08g01095 Cma-Chr8:6821815 2.16E-45 dispersed
Cma06g00436 Cma-Chr6:2020599 Cma08g01095 Cma-Chr8:6821815 2.47E-71 dispersed
Cma08g01095 Cma-Chr8:6821815 Cma14g00267 Cma-Chr14:1146642 1.50E-65 dispersed
Cma17g00175 Cma-Chr17:904430 Cma08g01095 Cma-Chr8:6821815 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g645 . . . . . Bpe14g01239 . . Cmo08g01071 Cmo17g00172 . . . . . . . . . . . . . . Cla06g00647 Cam06g0691 Cec06g0694 Cco06g0700 Clacu06g0678 Cmu06g0669 Cre06g1438 . Cone15ag0149 Cone7ag0308 Cone4ag0309 . Csa02g01080 Chy05g00340 . Blo02g00625 Blo07g00251 Bda11g00620 Bda13g00078 . Bpe13g00567 Bma02g00798 Bma06g01591 Sed04g1971 . . Cma08g01095 Cma17g00175 Car08g00970 Car17g00155 Cpe12g00150 Cpe17g00184 Bhi12g01642 Tan06g2433 Cmetu05g0804 Lac12g2197 Hepe03g0264 . Lcy13g0353 . . . . . . . Lsi09g01250 . . Cme05g00544
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003694 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 1 1 3 4 1 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma08g01095 Cma_Chr08 FPKM 16.621267 20.639997 1.748343 1.909464 5.417983 5.796058 6.024718 3.069834 2.946712 3.37077