Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma08g01097 | ATGCTTTTGAATGAAAGAAGTCGGGTCGGCTTCCCGGCCACCGATCCAGCAGAAACCGTCGTCAACGGCGGAGGAAGGGATCATGACGACGAAGAAGACAAGCAGAAAGAAGGCATGGTGGTGGTTGGCAACCGCCCATCGAGAGGGCGGCCACTGGGATCCAAAAACAAACAGAAATCCCCAATTATCGTCACGCGCGACAATCCTCACGCTCTTAGCACGCACGTGATCGAGATCGCCGGAGGAGACGACGTCGCCGACATCATAAATCAATTTTCTCGCCGCCGGCAGTGTGGGGTTTGTGTTCTCAGCGGCAGGGGCATGGTGGACGACGTCACTCTTCGGCAGTCGGCTGCTGTGATTCCACTTCATGGCCGGTTCGAGATGCTGTCTTTGACCGGTTCTTTTCTTCCCGGTCGAGCCGCTCCCGGTTCGAGTGGGCTGACCGTATACCTCGCTGGCGGGCAGGGGCAGGTGATCGGAGGGACAGTCGTGGGCCCGCTGTTGGCGTCTGGGCCTGTAGTGTTGATTGCCGCTTCTTTTGCTAATGCAATATATGAGAGATTGCCTTCAGAAAACGATCATAAAGAAGATGAGGTTTATCCGGCCACCGCAGGTAGCGGAGAAGTGGAGGCGCCGCCGTCGCTGCCGTATCCTCTGACGGTAGCTTCAATTCATGAGATGATGGTACCAAATAATCATGGAGAACACCTTGGAATTGGTGGGCATCTTTGGGCACATGGAGACAATCTTGTTTAA | 759 | 55.07 | MLLNERSRVGFPATDPAETVVNGGGRDHDDEEDKQKEGMVVVGNRPSRGRPLGSKNKQKSPIIVTRDNPHALSTHVIEIAGGDDVADIINQFSRRRQCGVCVLSGRGMVDDVTLRQSAAVIPLHGRFEMLSLTGSFLPGRAAPGSSGLTVYLAGGQGQVIGGTVVGPLLASGPVVLIAASFANAIYERLPSENDHKEDEVYPATAGSGEVEAPPSLPYPLTVASIHEMMVPNNHGEHLGIGGHLWAHGDNLV | 252 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 6829001 | 6830338 | + | CmaCh08G010970.1 | Cma08g01097 | 299792 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma08g01097 | 252 | MobiDBLite | consensus disorder prediction | 22 | 37 | - | - | |
| Cma08g01097 | 252 | ProSiteProfiles | PPC domain profile profile. | 69 | 203 | IPR005175 | - | |
| Cma08g01097 | 252 | MobiDBLite | consensus disorder prediction | 1 | 37 | - | - | |
| Cma08g01097 | 252 | CDD | DUF296 | 74 | 181 | IPR005175 | - | |
| Cma08g01097 | 252 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 | 29 | 202 | IPR014476 | GO:0003680 | |
| Cma08g01097 | 252 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 74 | 182 | IPR005175 | - | |
| Cma08g01097 | 252 | Gene3D | - | 73 | 199 | - | - | |
| Cma08g01097 | 252 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 71 | 193 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma08g01097 | Cma-Chr8:6829001 | Cma17g00175 | Cma-Chr17:904430 | 5.96E-87 | dispersed | |
| Cma12g01143 | Cma-Chr12:9003109 | Cma08g01097 | Cma-Chr8:6829001 | 2.83E-72 | wgd | |
| Cma05g01227 | Cma-Chr5:9430823 | Cma08g01097 | Cma-Chr8:6829001 | 4.61E-70 | wgd | |
| Cma06g01339 | Cma-Chr6:8796348 | Cma08g01097 | Cma-Chr8:6829001 | 1.71E-72 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma08g01097 | - | - | cmax:111494863 | 494.197 |