Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g01112 ATGGCTCGGGACGGGCATGTGGTGCCGGTGGATCCACAGACGGCGTTGACTGTTAAGAAGAAGAAACAGTCTTCTCGGAGTTGGATTCTACTGGATTGTACGGGCCAAGGGACCGTCCTCGATGTCGACAAGTATGCGATTATGCATCGAGTTCAAATTCATGCTCGAGATCTTCGGATTCTTGACCCTTTGCTTTCTTATCCCTCTACGATTTTGGGGCGTGAGAGGGCCATTGTTCTTAATCTGGAGCATATAAAGGCGATCATTACTGCTGAAGAGGTTTTGCTTAGAGATCCAACAGATGAACATGTCATCCCGGTGGTTGAAGAGCTTCAGAGACGACTGCCTCCTTCTAATGTCTTCCAAGAGTATCAGGGTGGGCTACATGATGGTGAAGCTGAAGAAGATGAATCCCCATTTGAATTCCGTGCCCTCGAGGTAGCTTTGGAAGCTATATGTAGTTTTCTTGCTGCTCGGACAACTGAACTGGAGACTGCTGCTTATCCAGCATTGGATGAGCTTACTACCAAGATTAGTAGCCGCAATTTGGACAGAGTTCGTAAATTGAAGAGTGCAATGACTAGGTTGACCGCAAGGGTTCAAAAGGTGAGAGATGAGCTTGAACAATTACTAGACGATGACGATGATATGGCAGACCTTTACTTGTCAAGAAAGACGAGTTCATCTTCTCCTGTAAGTGGTTCTGGTCCTGCCAATTGGTTTCCTGCATCTCCTACCATTGGTTCAAAGATCTCAAGAGCAAGCAGAGCAAGTATTGCAACTGCACGAGGGGACGAAGATGACATCGAAGAGCTTGAAATGTTACTGGAGGCCTACTTTATGCAGATTGATGGTACATTGAACAAATTAACTACACTGCGAGAATATATTGACGACACAGAAGATTATATCAATATCCAGCTCGATAATCATCGAAATCAACTCATCCAGTTGGAGCTGTTTTTAAGTTCTGGAACGGTTTGTATGTCTATCTATTCATTGGTTAGTGCCATATTTGGAATGAATATTCCATATACTTGGAATGACGACCATGGATACACGTTTAAATGGGTTGTCATTGTTTCTGGAGTAGCTTGCGCTTTGCTGTTCGTAGTGATTGTTTACTATGCTCGTCTCAAAGGTTTGGTGGGGTCTTGA 1158 44.3 MARDGHVVPVDPQTALTVKKKKQSSRSWILLDCTGQGTVLDVDKYAIMHRVQIHARDLRILDPLLSYPSTILGRERAIVLNLEHIKAIITAEEVLLRDPTDEHVIPVVEELQRRLPPSNVFQEYQGGLHDGEAEEDESPFEFRALEVALEAICSFLAARTTELETAAYPALDELTTKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDDDMADLYLSRKTSSSSPVSGSGPANWFPASPTIGSKISRASRASIATARGDEDDIEELEMLLEAYFMQIDGTLNKLTTLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVCMSIYSLVSAIFGMNIPYTWNDDHGYTFKWVVIVSGVACALLFVVIVYYARLKGLVGS 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6896552 6902193 - CmaCh08G011120.1 Cma08g01112 299807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g01112 385 PANTHER MAGNESIUM TRANSPORTER MRS2-I 1 385 - -
Cma08g01112 385 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 321 374 IPR045863 -
Cma08g01112 385 Coils Coil 186 213 - -
Cma08g01112 385 Gene3D Magnesium transport protein CorA, transmembrane region 103 315 - -
Cma08g01112 385 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 1 385 IPR039204 -
Cma08g01112 385 CDD Mrs2_Mfm1p-like 28 382 IPR039204 -
Cma08g01112 385 Pfam CorA-like Mg2+ transporter protein 259 373 IPR002523 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Cma08g01112 385 Gene3D - 14 99 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma08g01112 Cma17g00187 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g01112 Cma-Chr8:6896552 Cma14g01051 Cma-Chr14:5538346 1.40E-123 dispersed
Cma17g00187 Cma-Chr17:979088 Cma08g01112 Cma-Chr8:6896552 0 wgd
Cma19g00058 Cma-Chr19:314382 Cma08g01112 Cma-Chr8:6896552 7.57E-169 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g01112 K16075 - csv:101203841 655.981