Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g01114 ATGGATTCCAAGCTCTCCGATCTCAATCTCGGAGCCACCGAGCTCCGTCTCGGCCTCCCAGGAACAGCCGCCGAAAGCGACGGCTCTGCAGACAACTCTTCTGGGGTTCGAACTTACAAGAGAATTTTACAGAACGACTCTGCTCCTCCACCCAAGTCTCAGGTTGTTGGGTGGCCTCCGATTAGATCCTTTAGGAAAAATACTCTGCTGCCAAAGAAAACAGAGGCAACCACGGCGGCGGAGGGTGGAGGGATTTATGTGAAAGTGAGTATGGATGGAGCTCCTTATTTGAGGAAGATCGATGTGGGTCTCTACAAGGGGTACCCTTCACTTCTCAAGGGTTTAGAGGAGATGTTCAAGTTCAGAATCGGGGCGTACTGTGAAAGGGAAGGGTACCGGGGATCGGATTATGCCCCGACTTATGAAGATAAAGACGGAGATTGGATGCTGGTGGGCGATGTTCCGTGGCGGATGTTTATTTCGTCGTGCAAGAGGATGAGAATCATGAAAGGATCAGACGTTGGGGGACTGAGAAATTAA 540 50.93 MDSKLSDLNLGATELRLGLPGTAAESDGSADNSSGVRTYKRILQNDSAPPPKSQVVGWPPIRSFRKNTLLPKKTEATTAAEGGGIYVKVSMDGAPYLRKIDVGLYKGYPSLLKGLEEMFKFRIGAYCEREGYRGSDYAPTYEDKDGDWMLVGDVPWRMFISSCKRMRIMKGSDVGGLRN 179
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6914016 6914961 + CmaCh08G011140.1 Cma08g01114 299809

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g01114 179 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 6 178 IPR003311 GO:0005634|GO:0006355
Cma08g01114 179 SUPERFAMILY CAD & PB1 domains 78 170 - -
Cma08g01114 179 Gene3D - 79 179 - -
Cma08g01114 179 Pfam AUX/IAA family 42 177 IPR033389 -
Cma08g01114 179 MobiDBLite consensus disorder prediction 19 57 - -
Cma08g01114 179 PANTHER AUXIN-RESPONSIVE PROTEIN 6 178 - -
Cma08g01114 179 ProSiteProfiles PB1 domain profile. 84 171 IPR000270 GO:0005515
Cma08g01114 179 MobiDBLite consensus disorder prediction 26 51 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g01114 K14484 IAA; auxin-responsive protein IAA - csv:101204324 279.641
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma08g01114 Cma14g01773 CCT
Cma06g01345 Cma08g01114 CCT
Cma06g01345 Cma08g01114 ECH
Cma08g01114 Cma14g01773 ECH
Cma08g01114 Cma17g00191 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g01114 Cma-Chr8:6914016 Cma15g01091 Cma-Chr15:6946806 8.34E-56 dispersed
Cma06g00917 Cma-Chr6:6070153 Cma08g01114 Cma-Chr8:6914016 1.48E-58 transposed
Cma12g01123 Cma-Chr12:8883602 Cma08g01114 Cma-Chr8:6914016 1.76E-72 wgd
Cma14g01773 Cma-Chr14:12859026 Cma08g01114 Cma-Chr8:6914016 8.18E-75 wgd
Cma17g00191 Cma-Chr17:1004315 Cma08g01114 Cma-Chr8:6914016 1.53E-92 wgd
Cma17g01215 Cma-Chr17:8392765 Cma08g01114 Cma-Chr8:6914016 1.97E-70 wgd
Cma05g01202 Cma-Chr5:9290463 Cma08g01114 Cma-Chr8:6914016 1.25E-71 wgd
Cma06g01345 Cma-Chr6:8824088 Cma08g01114 Cma-Chr8:6914016 8.64E-73 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g603 . . Bda03g00851 . . Bpe14g01225 Bma04g00752 Bma05g01078 Cmo08g01090 Cmo17g00188 Cma06g01345 Cma14g01773 Car06g01166 Car14g01595 . . . . . . . . . . Cla06g00624 Cam06g0663 Cec06g0666 Cco06g0673 Clacu06g0650 Cmu06g0643 Cre06g1411 . . Cone7ag0293 Cone4ag0288 . Csa02g01107 Chy05g00367 Cme06g00549 Blo02g00604 Blo07g00242 Bda11g00609 . Bpe05g00869 Bpe13g00578 Bma02g00811 Bma06g01581 Sed09g0725 Cmo06g01357 Cmo14g01809 Cma08g01114 Cma17g00191 Car08g00997 Car17g00169 . Cpe17g00171 Bhi12g02258 Tan06g2467 Cmetu05g0496 . Hepe03g0246 . Lcy13g0326 Cla05g00491 Cam05g0536 Cec05g0547 Cco05g0548 Clacu05g0533 Cmu05g0505 Cre05g0574 Lsi09g01279 Csa03g01266 Chy06g00520 Cme05g00515
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000222 1 4 4 4 3 5 8 5 5 5 5 5 10 5 5 10 5 5 8 5 5 5 5 5 6 5 5 13 10 3 169
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35556 PF02309 AUX_IAA 7.80E-54 CL0072 Cma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma08g01114 Cma_Chr08 FPKM 16.998718 21.139328 37.097435 37.486771 11.542604 7.889198 11.815186 51.234108 56.607765 53.144821
Cma08g01114 Cma_Chr00 FPKM 26.558252 25.582304 27.233473 27.664045 17.72057 15.304095 14.385902 38.911343 42.545143 39.806763