Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma08g01115 | ATGGAGTACGGTGGTCCGCCCACCCCTCCGCCGCTCCCGCCGCTGCCCACCGGCGCCATCCTTCTCGGCAAATATCAGTTAGGTCGTTTTCTCGGCCGTGGAAGCTTCGCCAAGGTGTACCAGGCTCGTTCTCTCGCCGATGACTCCATCGTCGCCATTAAAATCATCGACAAGAACAAAACCATCGATGCCGCTATGGAGCCTTGCATTATCCGTGAGATCGCCGTGATGCGCCGCCTTCAGCACCATCCAAACATCCTCAAAATCCACGAAGTCATGGCGACAAAGACGAAGATCTATCTCGTCGTCGATTACGCCTCTGGCGGTGAACTCTTCGCTAAACTCCTCCGCCGTGGTAGGCTAACGGAATCCTCCGCCCGCCGCTACTTTCAACAACTCGTCTCTGCTCTGCATTTCTGTCACCAAAACGCCGTCGCTCATCGCGACATCAAACCCCAAAATCTCCTCCTCGACGAAGACGGAAACCTAAAGGTCTCCGACTTCGGTCTCTCAGCGTTACCAGAACAAATCAAAGACGGAATGCTCCACACAGCGTGCGGAACCCCTGCTTACGCAGCGCCAGAGGTAGTCACCAGGAGAGGCTACGACGGCGCAAAAGCCGACGCGTGGTCATGCGGCGTTATCCTCTTCGTCTTACTCTCTGGACACCTCCCATTCACCGACAACAATCTGGTGGCCATGTACAGTAAAGTTTACCGCCGGGAGTATCAATTTCCCGATTCGATTTCGAAGCCGGCTCGGCATTTGATTTTCCAACTCCTGGATCCAAATCCGAACACGAGGATGAGCATCGAGGCGTTGATGCAGCATTCGTGGTACAAGAAATCGGTGCGATCGAAGCCCCAAATCAGCAACCGGAGCTTGTTCGAATCGTTGGGTAATTACAAATCTGAATTGGGGGTTTCTGGATCAAATGCTTTTGATATAATTTCAATGTCATCTGGTTTGGATCTGTCGGGGCTGTTTGAGACGACGGATGATTGTAGGAAGAAGAGATTCATGACGGCGGTGAGCTTGGAGAAGGTGGAGGAGAGAGTAACAGAGATCGGTGGGGAATTGGGGTACAGAGTGGAGAAAGGGAAGAGCGGAGCAATTGGGTTGGGGAAAGGGAGGATGATTTTGGTGGTGGAGGTCTTGGAAATCACTGCTAATCTCTTAATTGTCGAAGTCAAGGTAGCTGAATCCAAAGCTGAGTTTGAGAGGATGCATTGGGGGGATTTGAAAGCCAAGTTGCAGGACATTGTTGTTTCTTGGCATACCAATGAGGAGGCCATATGA | 1299 | 52.04 | MEYGGPPTPPPLPPLPTGAILLGKYQLGRFLGRGSFAKVYQARSLADDSIVAIKIIDKNKTIDAAMEPCIIREIAVMRRLQHHPNILKIHEVMATKTKIYLVVDYASGGELFAKLLRRGRLTESSARRYFQQLVSALHFCHQNAVAHRDIKPQNLLLDEDGNLKVSDFGLSALPEQIKDGMLHTACGTPAYAAPEVVTRRGYDGAKADAWSCGVILFVLLSGHLPFTDNNLVAMYSKVYRREYQFPDSISKPARHLIFQLLDPNPNTRMSIEALMQHSWYKKSVRSKPQISNRSLFESLGNYKSELGVSGSNAFDIISMSSGLDLSGLFETTDDCRKKRFMTAVSLEKVEERVTEIGGELGYRVEKGKSGAIGLGKGRMILVVEVLEITANLLIVEVKVAESKAEFERMHWGDLKAKLQDIVVSWHTNEEAI | 432 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 6916716 | 6918014 | - | CmaCh08G011150.1 | Cma08g01115 | 299810 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma08g01115 | 432 | ProSitePatterns | Protein kinases ATP-binding region signature. | 31 | 54 | IPR017441 | GO:0005524 | |
Cma08g01115 | 432 | ProSiteProfiles | Protein kinase domain profile. | 25 | 280 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma08g01115 | 432 | PANTHER | SERINE/THREONINE KINASE | 16 | 428 | - | - | |
Cma08g01115 | 432 | Pfam | Protein kinase domain | 25 | 279 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma08g01115 | 432 | Pfam | NAF domain | 312 | 366 | IPR004041 | GO:0007165 | |
Cma08g01115 | 432 | SUPERFAMILY | Protein kinase-like (PK-like) | 21 | 289 | IPR011009 | - | |
Cma08g01115 | 432 | SMART | serkin_6 | 25 | 280 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma08g01115 | 432 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 145 | 157 | IPR008271 | GO:0004672|GO:0006468 | |
Cma08g01115 | 432 | CDD | CIPK_C | 312 | 415 | - | - | |
Cma08g01115 | 432 | ProSiteProfiles | NAF domain profile. | 306 | 330 | IPR018451 | GO:0007165 | |
Cma08g01115 | 432 | PANTHER | NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE | 16 | 428 | - | - | |
Cma08g01115 | 432 | Gene3D | Kinase associated domain 1, KA1 | 312 | 424 | - | - | |
Cma08g01115 | 432 | Gene3D | Transferase(Phosphotransferase) domain 1 | 18 | 311 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma08g01115 | Cma14g01768 | CCT | |
Cma08g01115 | Cma17g00195 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma08g01115 | Cma-Chr8:6916716 | Cma03g00303 | Cma-Chr3:3915626 | 7.07E-131 | dispersed | |
Cma14g01768 | Cma-Chr14:12842347 | Cma08g01115 | Cma-Chr8:6916716 | 0 | wgd | |
Cma17g00195 | Cma-Chr17:1022473 | Cma08g01115 | Cma-Chr8:6916716 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
68773 | PF00069 | Pkinase | 5.20E-72 | CL0016 | Cma | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma08g01115 | K12761 | - | csv:101215156 | 780.015 |