Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g01115 ATGGAGTACGGTGGTCCGCCCACCCCTCCGCCGCTCCCGCCGCTGCCCACCGGCGCCATCCTTCTCGGCAAATATCAGTTAGGTCGTTTTCTCGGCCGTGGAAGCTTCGCCAAGGTGTACCAGGCTCGTTCTCTCGCCGATGACTCCATCGTCGCCATTAAAATCATCGACAAGAACAAAACCATCGATGCCGCTATGGAGCCTTGCATTATCCGTGAGATCGCCGTGATGCGCCGCCTTCAGCACCATCCAAACATCCTCAAAATCCACGAAGTCATGGCGACAAAGACGAAGATCTATCTCGTCGTCGATTACGCCTCTGGCGGTGAACTCTTCGCTAAACTCCTCCGCCGTGGTAGGCTAACGGAATCCTCCGCCCGCCGCTACTTTCAACAACTCGTCTCTGCTCTGCATTTCTGTCACCAAAACGCCGTCGCTCATCGCGACATCAAACCCCAAAATCTCCTCCTCGACGAAGACGGAAACCTAAAGGTCTCCGACTTCGGTCTCTCAGCGTTACCAGAACAAATCAAAGACGGAATGCTCCACACAGCGTGCGGAACCCCTGCTTACGCAGCGCCAGAGGTAGTCACCAGGAGAGGCTACGACGGCGCAAAAGCCGACGCGTGGTCATGCGGCGTTATCCTCTTCGTCTTACTCTCTGGACACCTCCCATTCACCGACAACAATCTGGTGGCCATGTACAGTAAAGTTTACCGCCGGGAGTATCAATTTCCCGATTCGATTTCGAAGCCGGCTCGGCATTTGATTTTCCAACTCCTGGATCCAAATCCGAACACGAGGATGAGCATCGAGGCGTTGATGCAGCATTCGTGGTACAAGAAATCGGTGCGATCGAAGCCCCAAATCAGCAACCGGAGCTTGTTCGAATCGTTGGGTAATTACAAATCTGAATTGGGGGTTTCTGGATCAAATGCTTTTGATATAATTTCAATGTCATCTGGTTTGGATCTGTCGGGGCTGTTTGAGACGACGGATGATTGTAGGAAGAAGAGATTCATGACGGCGGTGAGCTTGGAGAAGGTGGAGGAGAGAGTAACAGAGATCGGTGGGGAATTGGGGTACAGAGTGGAGAAAGGGAAGAGCGGAGCAATTGGGTTGGGGAAAGGGAGGATGATTTTGGTGGTGGAGGTCTTGGAAATCACTGCTAATCTCTTAATTGTCGAAGTCAAGGTAGCTGAATCCAAAGCTGAGTTTGAGAGGATGCATTGGGGGGATTTGAAAGCCAAGTTGCAGGACATTGTTGTTTCTTGGCATACCAATGAGGAGGCCATATGA 1299 52.04 MEYGGPPTPPPLPPLPTGAILLGKYQLGRFLGRGSFAKVYQARSLADDSIVAIKIIDKNKTIDAAMEPCIIREIAVMRRLQHHPNILKIHEVMATKTKIYLVVDYASGGELFAKLLRRGRLTESSARRYFQQLVSALHFCHQNAVAHRDIKPQNLLLDEDGNLKVSDFGLSALPEQIKDGMLHTACGTPAYAAPEVVTRRGYDGAKADAWSCGVILFVLLSGHLPFTDNNLVAMYSKVYRREYQFPDSISKPARHLIFQLLDPNPNTRMSIEALMQHSWYKKSVRSKPQISNRSLFESLGNYKSELGVSGSNAFDIISMSSGLDLSGLFETTDDCRKKRFMTAVSLEKVEERVTEIGGELGYRVEKGKSGAIGLGKGRMILVVEVLEITANLLIVEVKVAESKAEFERMHWGDLKAKLQDIVVSWHTNEEAI 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6916716 6918014 - CmaCh08G011150.1 Cma08g01115 299810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g01115 432 ProSitePatterns Protein kinases ATP-binding region signature. 31 54 IPR017441 GO:0005524
Cma08g01115 432 ProSiteProfiles Protein kinase domain profile. 25 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma08g01115 432 PANTHER SERINE/THREONINE KINASE 16 428 - -
Cma08g01115 432 Pfam Protein kinase domain 25 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma08g01115 432 Pfam NAF domain 312 366 IPR004041 GO:0007165
Cma08g01115 432 SUPERFAMILY Protein kinase-like (PK-like) 21 289 IPR011009 -
Cma08g01115 432 SMART serkin_6 25 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma08g01115 432 ProSitePatterns Serine/Threonine protein kinases active-site signature. 145 157 IPR008271 GO:0004672|GO:0006468
Cma08g01115 432 CDD CIPK_C 312 415 - -
Cma08g01115 432 ProSiteProfiles NAF domain profile. 306 330 IPR018451 GO:0007165
Cma08g01115 432 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 16 428 - -
Cma08g01115 432 Gene3D Kinase associated domain 1, KA1 312 424 - -
Cma08g01115 432 Gene3D Transferase(Phosphotransferase) domain 1 18 311 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma08g01115 Cma14g01768 CCT
Cma08g01115 Cma17g00195 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g01115 Cma-Chr8:6916716 Cma03g00303 Cma-Chr3:3915626 7.07E-131 dispersed
Cma14g01768 Cma-Chr14:12842347 Cma08g01115 Cma-Chr8:6916716 0 wgd
Cma17g00195 Cma-Chr17:1022473 Cma08g01115 Cma-Chr8:6916716 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68773 PF00069 Pkinase 5.20E-72 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g01115 K12761 - csv:101215156 780.015