Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g01116 ATGGAATTTCGGGGAAAGATGAAGATTCAGCCTATTGATATCGATCCTCCAAATGGAAGGGTTGGCATTCGTAATGATCCAGGCAAGCCGATGCTGAAATCGCGTTTGAGAAAGCTCTTCGATCGGCCGTTTCCGAATGTTCTAAAGAATTCTTCAGCGGAAAAGCCCATAGCGACTGGAGAGGCCGCACAGCTCATCGTCAATAAAGATGGAGTGGGTGAGTTCGAGCCGAGCTCCATCTGTTTGGCTAAAATGATTCAGTGTTTTATAGAGGAGAGCAACGAGAAGCAGTCGTCAGTGGCCACTGCTATGAAAAATGGTCGCAATCGCTGTAATTGCTTCAACGGAAACAGTAATGACAGTTCCGACGATGAGTCCGATGACTTTGGTGAATCTGTAACAATCGGATCATCTGGTGCGGATGTTTCCGATTTACTCAAGAGTCTGATTCTCTGCGACAGTGTAACCGAGAGAAATCTCTTAGCGGACACCGCAAAGATTGTTGAGAAGAACAATAAAATTCACAAAATGAAGAACGATTTGAGAAAAGTTGTCACGGATGCGCTTACATCTCTCGGTTACGATTCTTCAATCTGTAAATCAAAATGGGACAAATCTCCTTCATATCCTGCAGGGGAATATGAATACATCGATGTGATGGTGGAGGGCGAGAGATTGGTGATAGACATAGATTTCAGATCGGAGTTTGAGATCGCTCGTTCGACTGGTGTGTACAAGGCGATGCTCCAAGTACTTCCGACTATCTTCGTCGGCAAAACGGATCGTCTAGGTCAAATCGTCTCGATCGTATCGGAGGCGGCGAGACAGAGCTTGAAAAAGAAGGGGATGCACTTTCCGCCATGGAGGAAAGCCGAATACATGAGATCCAAATGGCTTTCCTCTCACATCAGATCCAAACCTCCAAATCCATCGCAAAACGAGAACGAAATCACGGACGAGGTCCGAAGCGACAATAGCGAGCAATCCTCGATAGAAACGGATTGCGGAGAATTCGAAATGATTTTCGACGAGGAAACGACGACGACGACATCACCTGAGAGTGATTCGATGAAATCATCGCCTCCGCCGCAGAAATGTTTTAATGGCGGTGAGAAGGCGGCTGTGGCAGTGACGGCCTGGCAACCTCCGGCGATCAAACCGAAGAGTCTCGATAAAGGAGCGAAGATCGTTACTGGATTGACATCGATCCTCAAAGAGAATCCGTAG 1227 47.03 MEFRGKMKIQPIDIDPPNGRVGIRNDPGKPMLKSRLRKLFDRPFPNVLKNSSAEKPIATGEAAQLIVNKDGVGEFEPSSICLAKMIQCFIEESNEKQSSVATAMKNGRNRCNCFNGNSNDSSDDESDDFGESVTIGSSGADVSDLLKSLILCDSVTERNLLADTAKIVEKNNKIHKMKNDLRKVVTDALTSLGYDSSICKSKWDKSPSYPAGEYEYIDVMVEGERLVIDIDFRSEFEIARSTGVYKAMLQVLPTIFVGKTDRLGQIVSIVSEAARQSLKKKGMHFPPWRKAEYMRSKWLSSHIRSKPPNPSQNENEITDEVRSDNSEQSSIETDCGEFEMIFDEETTTTTSPESDSMKSSPPPQKCFNGGEKAAVAVTAWQPPAIKPKSLDKGAKIVTGLTSILKENP 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6921905 6924332 - CmaCh08G011160.1 Cma08g01116 299811

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g01116 408 MobiDBLite consensus disorder prediction 302 316 - -
Cma08g01116 408 Pfam PDDEXK-like family of unknown function 84 304 IPR006502 -
Cma08g01116 408 TIGRFAM A_thal_3542: uncharacterized plant-specific domain TIGR01615 182 305 IPR006502 -
Cma08g01116 408 MobiDBLite consensus disorder prediction 343 363 - -
Cma08g01116 408 MobiDBLite consensus disorder prediction 300 370 - -
Cma08g01116 408 PANTHER OS03G0796600 PROTEIN 29 405 IPR006502 -
Cma08g01116 408 PANTHER RNA POLYMERASE SUBUNIT BETA-BETA PROTEIN, PUTATIVE (DUF506)-RELATED 29 405 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g01116 - - - csv:101219203 634.795
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g01353 Cma08g01116 CCT
Cma08g01116 Cma14g01763 CCT
Cma08g01116 Cma17g00197 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g01116 Cma-Chr8:6921905 Cma13g00641 Cma-Chr13:6079335 3.49E-32 dispersed
Cma20g00203 Cma-Chr20:966516 Cma08g01116 Cma-Chr8:6921905 6.84E-31 dispersed
Cma02g00624 Cma-Chr2:3760557 Cma08g01116 Cma-Chr8:6921905 1.20E-34 transposed
Cma14g01763 Cma-Chr14:12829083 Cma08g01116 Cma-Chr8:6921905 3.24E-165 wgd
Cma17g00197 Cma-Chr17:1032299 Cma08g01116 Cma-Chr8:6921905 0 wgd
Cma19g00012 Cma-Chr19:74654 Cma08g01116 Cma-Chr8:6921905 1.24E-110 wgd
Cma02g01777 Cma-Chr2:9900093 Cma08g01116 Cma-Chr8:6921905 2.19E-115 wgd
Cma06g01353 Cma-Chr6:8872500 Cma08g01116 Cma-Chr8:6921905 8.70E-164 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g585 Blo01g00105 Blo12g00349 Bda03g00856 Bda08g00262 . Bpe14g01218 Bma04g00756 Bma05g01084 Cmo08g01092 Cmo17g00192 Cma06g01353 Cma14g01763 . Car14g01589 Sed02g1359 Cpe08g00298 Cpe03g01479 Bhi01g00743 Tan10g0768 Cmetu06g2260 Lac12g2236 Hepe05g1600 . Lcy11g1597 Cla06g00620 Cam06g0659 Cec06g0663 Cco06g0669 Clacu06g0646 Cmu06g0640 Cre06g1407 . . Cone7ag0287 Cone4ag0281 Lsi05g01652 Csa02g01111 . Cme06g00558 Blo02g00595 Blo07g00238 Bda11g00605 . Bpe05g00874 Bpe13g00581 . Bma06g01578 Sed04g1945 Cmo06g01366 Cmo14g01803 Cma08g01116 Cma17g00197 Car08g00999 Car17g00174 Cpe12g00168 Cpe17g00169 Bhi12g02250 Tan06g2473 Cmetu05g0608 . Hepe03g0238 . Lcy13g0320 Cla05g00497 Cam05g0545 Cec05g0558 Cco05g0556 Clacu05g0542 Cmu05g0514 Cre05g0582 Lsi09g01284 Csa03g01276 Chy06g00528 Cme05g00511
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001669 2 2 3 3 2 2 3 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 4 2 1 70
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma08g01116 Cma_Chr08 FPKM 30.416666 32.896439 8.987565 9.030407 0.993916 0.888063 0.710123 15.706106 16.402557 17.289759