Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g01117 ATGGCACAGTCTCTGCAACTTTTCACCTCCTCCACCACCCGCTCTCCTTCCATTTCTCTTCCGAAACATTCCCTCTCAAAAACCCCCTCCTCTTCCACCGCCGCCTTCCGCCTCCCTGTCTCCTTCAACAAATTTTCAATTCGAGCCTCTTCCTCTCCGGATCTCAACCCTCTGTCATCAGCTTCCACTTCCCAAGTCTTGGTTTCTGAAAATGGCTCGAGTTCCGGAGGTGGGTTTGTGTCTACTTCTGCTACTACCAGGGAGTTTGTGCCGGCTGTGTCTGATGGCAGCTCGATTGACGTCGATACTGTCACGGAGGCTGAGTTGAAGGAGAATGGCTTCAGGAGTACAAGGAGGACGAAACTTGTGTGTACTATTGGTCCTGTTACTTGCGGATTTGAGCAGCTTGAAGCGCTTGCTGTTGGCGGTATGAATGTTGCGAGGATCAATATGTGCCATGGAACTCGAGAGTGGCATCGGATGGTCATTGAACGCGTGCGCAGGCTCAATGAGGAGAAGGGCTATGCTGTGGCTATTATGATGGATACTGAAGGGAGTGAAATTCATATGGGTGATCTTGGTGGAGCTTCCTCGGCTAAAGCGGAAGATGGTGAAATCTGGACATTCAGTGTCAGAGCTTTTGATTCAACACTCCCAGAACGCACCATTAATGTGAACTACGAAGGGTTTGCAGAAGATGTGAGAGTTGGTGATGATCTCCTTGTTGATGGTGGAATGGTGAGGTTTGAGGTAATCGAAAAGATTGGTCCTGATGTTAAGTGCCTGTGCACTGACCCGGGATTGTTGTTGCCACGGGCTAATTTGACTTTTTGGAGGGATGGTCATCTCGTACGAGAACGTAACGCCATGCTCCCTACAATTTCTTCTAAGGATTGGTTGGATATTGATTTCGGGATTGCTGAAGGTGTTGATTTTCTTGCCATATCATTTGTCAAGTCTGCTGAAGTGATTAAACATCTCAAAAGCTATATTGCTGCACGTTCTCGTGGCAGTGACATTTCCATCATTGCGAAGATAGAGAGTCTGGACTCGTTGAAGAACTTGGAAGAAATTATTGTAGCATCTGATGGAGCTATGGTAGCCAGAGGAGATTTAGGAGCTCAAATACCTCTGGAACAGGTGCCATCAGTCCAGCAAAAGGTCGTCCAACTATGCAGGCGGTTAAATAAGCCAGTTATCGTTGCCTCTCAGCTGCTCGAGTCGATGATTGAATACCCTACACCTACCAGAGCTGAAGTTGCTGATGTTTCCGAGGCTGTTAGGCAGCGAGCAGATGCTCTAATGCTCTCTGGTGAGTCCGCCATGGGCCAGTTCCCCGAGAAGGCATTGACAGTCTTGAGAAGCGTCAGTCTAAGAATTGAGAAGTGGTGGAGGGATGAGAAACGCCATGAAGCTATGGAACTCCCAGAAGTTGGATCTTCATACTCGGATAGCATCTTAGAAGAGATCTGCAATTCCACTGCCAAAATGGCCAATAATTTGGAGGTGGATGCAATTTTTGTCTACACAAAGACAGGCCACATGGCATCTCTCCTATCCCGATGCAGACCCGATTGCCCGATCTTTGCGTTTACTTCCACGACATCTGTGAGGAGACGTCTTAACTTGCAATGGGGCTTGATACCCTTCCGCTTGAGCTTCTCGGACGACATGGAAAACAACCTCAACAAAACGTTTATGCTGCTTAAAGCCAGAAACTTGATAAAATCAGGTGACCTTGTACTTGCTGTATCAGACATGCTGCAGTCTATTCAAGTAATGAATGTTCCATAA 1794 47.49 MAQSLQLFTSSTTRSPSISLPKHSLSKTPSSSTAAFRLPVSFNKFSIRASSSPDLNPLSSASTSQVLVSENGSSSGGGFVSTSATTREFVPAVSDGSSIDVDTVTEAELKENGFRSTRRTKLVCTIGPVTCGFEQLEALAVGGMNVARINMCHGTREWHRMVIERVRRLNEEKGYAVAIMMDTEGSEIHMGDLGGASSAKAEDGEIWTFSVRAFDSTLPERTINVNYEGFAEDVRVGDDLLVDGGMVRFEVIEKIGPDVKCLCTDPGLLLPRANLTFWRDGHLVRERNAMLPTISSKDWLDIDFGIAEGVDFLAISFVKSAEVIKHLKSYIAARSRGSDISIIAKIESLDSLKNLEEIIVASDGAMVARGDLGAQIPLEQVPSVQQKVVQLCRRLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESAMGQFPEKALTVLRSVSLRIEKWWRDEKRHEAMELPEVGSSYSDSILEEICNSTAKMANNLEVDAIFVYTKTGHMASLLSRCRPDCPIFAFTSTTSVRRRLNLQWGLIPFRLSFSDDMENNLNKTFMLLKARNLIKSGDLVLAVSDMLQSIQVMNVP 597
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6928494 6932597 - CmaCh08G011170.1 Cma08g01117 299812

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g01117 597 MobiDBLite consensus disorder prediction 1 30 - -
Cma08g01117 597 Gene3D - 461 587 IPR036918 -
Cma08g01117 597 Pfam Pyruvate kinase, alpha/beta domain 488 587 IPR015795 -
Cma08g01117 597 PANTHER PLASTIDIAL PYRUVATE KINASE 1, CHLOROPLASTIC 85 597 - -
Cma08g01117 597 ProSitePatterns Pyruvate kinase active site signature. 340 352 IPR018209 GO:0004743|GO:0006096
Cma08g01117 597 Gene3D - 186 292 IPR015806 GO:0004743|GO:0006096
Cma08g01117 597 PRINTS Pyruvate kinase family signature 175 191 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cma08g01117 597 PRINTS Pyruvate kinase family signature 310 324 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cma08g01117 597 PRINTS Pyruvate kinase family signature 342 368 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cma08g01117 597 PRINTS Pyruvate kinase family signature 369 393 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cma08g01117 597 PRINTS Pyruvate kinase family signature 394 418 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cma08g01117 597 PRINTS Pyruvate kinase family signature 419 437 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cma08g01117 597 PRINTS Pyruvate kinase family signature 438 454 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cma08g01117 597 Pfam Pyruvate kinase, barrel domain 118 463 IPR015793 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cma08g01117 597 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 102 464 IPR015813 GO:0003824
Cma08g01117 597 TIGRFAM pyruv_kin: pyruvate kinase 118 586 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cma08g01117 597 PANTHER PYRUVATE KINASE 85 597 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cma08g01117 597 SUPERFAMILY PK beta-barrel domain-like 187 278 IPR011037 -
Cma08g01117 597 SUPERFAMILY PK C-terminal domain-like 449 595 IPR036918 -
Cma08g01117 597 Gene3D - 118 460 IPR040442 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g01117 K00873 PK, pyk; pyruvate kinase [EC:2.7.1.40] - csv:101218017 1061.98
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma08g01117 Cma17g00198 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00428 Cma-Chr4:2194940 Cma08g01117 Cma-Chr8:6928494 0 dispersed
Cma08g01117 Cma-Chr8:6928494 Cma16g00303 Cma-Chr16:1410722 0 dispersed
Cma17g00198 Cma-Chr17:1039692 Cma08g01117 Cma-Chr8:6928494 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g584 Blo01g00106 . . Bda08g00261 . . . Bma05g01085 . . . . . . . . . . . . . . . . Cla06g00619 Cam06g0657 Cec06g0661 Cco06g0667 Clacu06g0644 Cmu06g0638 Cre06g1405 . . . . . Csa02g01116 Chy05g00372 . . . . . Bpe05g00875 . . . Sed09g0729 . . Cma08g01117 Cma17g00198 Car08g01000 Car17g00175 Cpe12g00169 Cpe17g00168 Bhi12g02248 Tan06g2474 Cmetu05g0533 . Hepe03g0236 . Lcy13g0319 . . . . . . . Lsi09g01285 . . Cme05g00500
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006080 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma08g01117 Cma_Chr08 FPKM 44.185371 48.550232 53.08054 53.334942 65.596275 65.423912 62.549816 104.340729 104.558136 104.903702