Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g01125 ATGAGTGCCGGCGCGGCGACGTTCCGGTCTATACTTGACAAACCCCTCAACCAGCTGACGGAGGATGACATTTCGCAGCTCACTCGAGAGGACTGTCGCAAATACCTAAAAGAAAAAGGAATGCGGCGGCCCTCGTGGAACAAATCTCAGGCGATCCAGCAGGTTATTTGTCTGAAAGCATTGCTTGAACCTTGTGATGATTCCGGCGCCAGTGCTCTCAGGAAGGTCGCCGTTTCGCCTCGGGTGAATTCAAATCAAGGCGGTTCACCCAGGGAACCGAGTGATGATGCTCAGGTTACGATATCAGTTGATGAATCTGCGTATAGCAATATGGAGACTGCAAAATCTACTCCTGAGGATCCACCGGCTGTACCAGACAACAAGGTCACTAGTCCCAGAGATCAATGTGATACAAATGGAATGGATGGCCAAATGACAATTTTCTATTGTGGCAAGGTGAATGTGTATGATGGAGTTCCAGCAGATAAGGCATGGGCAATCATGCATCTAGCAGCTAGTCCAGTTCATTTCCCTCAGAATCACACCATGGGTGGAACTGCTTCATGTCAGTCTCCACCATGTGTTTTGCAGAATGCCAATGAGAGAGATGACTTTTTTCCTCCTAGTGAGAAGATGGTTGAGTACCCTCAGCAGCAGCAGCATATAAAAGGAACCAGTACTCGAGATTCTGATATTGAGGGTCAGGCGAGTCGGAAAGTTTCATTACAGAGATATCTTGAAAAGCGAAAAGACAGGTTAAAGAACAAGAAAAATACAGGATTGGCTTCTTCTAGCCTGGAGGGGTATATGAACCATCAAATGAGGACGCATATATCCAATAAGAATTTAGGTCAGATTGTGACAAGCTCTTTATCCCCAACTGGAGTAGCAAAAGCCTTCGTTGGAACAGCTGACAATCAGCCAAAACTTGCATGCTTCCCTGTCGACCTTAATATATCCAGGAGTGCTGAGTTGATGACATGCTCTACTTCAGAGATCATCCTTGCCGTCACAATCGTATTTTCTCCTGATCCTAATGTTTGTAAGCGGTTGTGCAATACTCATTCTCACCACCACTGA 1080 46.2 MSAGAATFRSILDKPLNQLTEDDISQLTREDCRKYLKEKGMRRPSWNKSQAIQQVICLKALLEPCDDSGASALRKVAVSPRVNSNQGGSPREPSDDAQVTISVDESAYSNMETAKSTPEDPPAVPDNKVTSPRDQCDTNGMDGQMTIFYCGKVNVYDGVPADKAWAIMHLAASPVHFPQNHTMGGTASCQSPPCVLQNANERDDFFPPSEKMVEYPQQQQHIKGTSTRDSDIEGQASRKVSLQRYLEKRKDRLKNKKNTGLASSSLEGYMNHQMRTHISNKNLGQIVTSSLSPTGVAKAFVGTADNQPKLACFPVDLNISRSAELMTCSTSEIILAVTIVFSPDPNVCKRLCNTHSHHH 359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6956617 6960695 - CmaCh08G011250.1 Cma08g01125 299820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g01125 359 MobiDBLite consensus disorder prediction 110 138 - -
Cma08g01125 359 Pfam tify domain 144 172 IPR010399 -
Cma08g01125 359 PANTHER PROTEIN TIFY 4B-LIKE ISOFORM X1 4 294 - -
Cma08g01125 359 MobiDBLite consensus disorder prediction 218 238 - -
Cma08g01125 359 MobiDBLite consensus disorder prediction 79 98 - -
Cma08g01125 359 ProSiteProfiles Tify domain profile. 138 173 IPR010399 -
Cma08g01125 359 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 4 294 IPR040390 -
Cma08g01125 359 SMART tify_2 138 173 IPR010399 -
Cma08g01125 359 Pfam Jas motif 235 256 IPR018467 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g01125 Cma-Chr8:6956617 Cma08g00811 Cma-Chr8:4904162 2.40E-08 dispersed
Cma14g01200 Cma-Chr14:9594594 Cma08g01125 Cma-Chr8:6956617 2.18E-07 dispersed
Cma08g01125 Cma-Chr8:6956617 Cma17g00207 Cma-Chr17:1073070 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35557 PF06200 tify 5.20E-15 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g01125 - - bhj:120092625 572.778