Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g01125 ATGAGTGCCGGCGCGGCGACGTTCCGGTCTATACTTGACAAACCCCTCAACCAGCTGACGGAGGATGACATTTCGCAGCTCACTCGAGAGGACTGTCGCAAATACCTAAAAGAAAAAGGAATGCGGCGGCCCTCGTGGAACAAATCTCAGGCGATCCAGCAGGTTATTTGTCTGAAAGCATTGCTTGAACCTTGTGATGATTCCGGCGCCAGTGCTCTCAGGAAGGTCGCCGTTTCGCCTCGGGTGAATTCAAATCAAGGCGGTTCACCCAGGGAACCGAGTGATGATGCTCAGGTTACGATATCAGTTGATGAATCTGCGTATAGCAATATGGAGACTGCAAAATCTACTCCTGAGGATCCACCGGCTGTACCAGACAACAAGGTCACTAGTCCCAGAGATCAATGTGATACAAATGGAATGGATGGCCAAATGACAATTTTCTATTGTGGCAAGGTGAATGTGTATGATGGAGTTCCAGCAGATAAGGCATGGGCAATCATGCATCTAGCAGCTAGTCCAGTTCATTTCCCTCAGAATCACACCATGGGTGGAACTGCTTCATGTCAGTCTCCACCATGTGTTTTGCAGAATGCCAATGAGAGAGATGACTTTTTTCCTCCTAGTGAGAAGATGGTTGAGTACCCTCAGCAGCAGCAGCATATAAAAGGAACCAGTACTCGAGATTCTGATATTGAGGGTCAGGCGAGTCGGAAAGTTTCATTACAGAGATATCTTGAAAAGCGAAAAGACAGGTTAAAGAACAAGAAAAATACAGGATTGGCTTCTTCTAGCCTGGAGGGGTATATGAACCATCAAATGAGGACGCATATATCCAATAAGAATTTAGGTCAGATTGTGACAAGCTCTTTATCCCCAACTGGAGTAGCAAAAGCCTTCGTTGGAACAGCTGACAATCAGCCAAAACTTGCATGCTTCCCTGTCGACCTTAATATATCCAGGAGTGCTGAGTTGATGACATGCTCTACTTCAGAGATCATCCTTGCCGTCACAATCGTATTTTCTCCTGATCCTAATGTTTGTAAGCGGTTGTGCAATACTCATTCTCACCACCACTGA 1080 46.2 MSAGAATFRSILDKPLNQLTEDDISQLTREDCRKYLKEKGMRRPSWNKSQAIQQVICLKALLEPCDDSGASALRKVAVSPRVNSNQGGSPREPSDDAQVTISVDESAYSNMETAKSTPEDPPAVPDNKVTSPRDQCDTNGMDGQMTIFYCGKVNVYDGVPADKAWAIMHLAASPVHFPQNHTMGGTASCQSPPCVLQNANERDDFFPPSEKMVEYPQQQQHIKGTSTRDSDIEGQASRKVSLQRYLEKRKDRLKNKKNTGLASSSLEGYMNHQMRTHISNKNLGQIVTSSLSPTGVAKAFVGTADNQPKLACFPVDLNISRSAELMTCSTSEIILAVTIVFSPDPNVCKRLCNTHSHHH 359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6956617 6960695 - CmaCh08G011250.1 Cma08g01125 299820

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g01125 359 MobiDBLite consensus disorder prediction 110 138 - -
Cma08g01125 359 Pfam tify domain 144 172 IPR010399 -
Cma08g01125 359 PANTHER PROTEIN TIFY 4B-LIKE ISOFORM X1 4 294 - -
Cma08g01125 359 MobiDBLite consensus disorder prediction 218 238 - -
Cma08g01125 359 MobiDBLite consensus disorder prediction 79 98 - -
Cma08g01125 359 ProSiteProfiles Tify domain profile. 138 173 IPR010399 -
Cma08g01125 359 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 4 294 IPR040390 -
Cma08g01125 359 SMART tify_2 138 173 IPR010399 -
Cma08g01125 359 Pfam Jas motif 235 256 IPR018467 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g01125 - - - bhj:120092625 572.778
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g01125 Cma-Chr8:6956617 Cma08g00811 Cma-Chr8:4904162 2.40E-08 dispersed
Cma14g01200 Cma-Chr14:9594594 Cma08g01125 Cma-Chr8:6956617 2.18E-07 dispersed
Cma08g01125 Cma-Chr8:6956617 Cma17g00207 Cma-Chr17:1073070 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g554 Blo01g00111 . . Bda08g00254 . . . Bma05g01092 Cmo08g01098 Cmo17g00201 . . . . . . . . . . . . . . Cla06g00612 Cam06g0650 Cec06g0653 Cco06g0656 Clacu06g0637 Cmu06g0631 Cre06g1398 Cone14ag0872 . . . . Csa02g01125 Chy05g00381 . . Blo07g00232 Bda11g00596 . Bpe05g00883 Bpe13g00588 . Bma06g01570 Sed09g0734 . . Cma08g01125 . Car08g01006 Car17g00183 Cpe12g00176 Cpe17g00164 Bhi12g02238 Tan06g2483 Cmetu05g1474 . . . . . . . . . . . Lsi09g01294 . . Cme05g00489
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma17g00633 CST 1 230 Tify Gene Family AT3G21175 56.1 4.2e-59 225.3
Cma08g00850 CST 19 247 Tify Gene Family AT3G21175 55.0 2.1e-55 213.0
Cma05g00536 . 102 350 Tify Gene Family AT4G24470 50.5 5.7e-65 245.4
Cma12g00207 . 48 249 Tify Gene Family AT4G24470 56.4 1.7e-61 233.8
Cma11g01674 . 89 267 Tify Gene Family AT4G24470 59.1 2.8e-48 189.9
Cma19g00483 . 82 260 Tify Gene Family AT4G24470 59.8 8.3e-48 188.3
Cma17g00633 CST 1 288 Tify Gene Family AT1G51600 58.8 4.3e-86 315.5
Cma08g00850 CST 19 317 Tify Gene Family AT1G51600 57.0 9.8e-83 304.3
Cma19g00483 . 79 280 Tify Gene Family AT1G51600 59.8 9.6e-54 208.0
Cma11g01674 . 86 288 Tify Gene Family AT1G51600 57.3 4.8e-53 205.7
Cma05g00535 . 89 264 Tify Gene Family AT1G51600 59.0 8.4e-50 194.9
Cma12g00207 . 384 557 Tify Gene Family AT1G51600 56.6 1.9e-46 183.7
Cma05g00536 . 126 304 Tify Gene Family AT1G51600 56.0 4.3e-46 182.6
Cma05g00536 . 102 350 Tify Gene Family AT4G24470 50.5 5.7e-65 245.4
Cma12g00207 . 48 249 Tify Gene Family AT4G24470 56.4 1.7e-61 233.8
Cma11g01674 . 89 267 Tify Gene Family AT4G24470 59.1 2.8e-48 189.9
Cma19g00483 . 82 260 Tify Gene Family AT4G24470 59.8 8.3e-48 188.3
Cma17g00633 CST 1 288 Tify Gene Family AT1G51600 58.8 4.3e-86 315.5
Cma08g00850 CST 19 317 Tify Gene Family AT1G51600 57.0 9.8e-83 304.3
Cma19g00483 . 79 280 Tify Gene Family AT1G51600 59.8 9.6e-54 208.0
Cma11g01674 . 86 288 Tify Gene Family AT1G51600 57.3 4.8e-53 205.7
Cma05g00535 . 89 264 Tify Gene Family AT1G51600 59.0 8.4e-50 194.9
Cma12g00207 . 384 557 Tify Gene Family AT1G51600 56.6 1.9e-46 183.7
Cma05g00536 . 126 304 Tify Gene Family AT1G51600 56.0 4.3e-46 182.6
Cma17g00633 CST 1 230 Tify Gene Family AT3G21175 56.1 4.2e-59 225.3
Cma08g00850 CST 19 247 Tify Gene Family AT3G21175 55.0 2.1e-55 213.0
Cma17g00207 CCT 1 180 Tify Gene Family AT4G14713 52.1 2.7e-45 179.5
Cma08g01125 . 1 180 Tify Gene Family AT4G14713 51.6 3.9e-44 175.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003252 2 5 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 4 1 49
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35557 PF06200 tify 5.20E-15 No_clan Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma08g01125 Cma_Chr08 FPKM 4.917502 5.520284 11.935668 13.959439 10.000336 10.270891 11.21486 4.01528 3.579707 3.642324