Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g01127 ATGGAAAAAACAGCTACAGAGCCTTGGCGATTCGAGCCGCCACCGTCTCATTCCTCCTCCGTCTACCGTCCGCCGGACACCCCATTAGAGCCCATGGAGTTCCTCTCCCGCTCTTGGAGCGTCTCTGCTCTCGAGGTCTCCAAAGCCATCGCCCCTCCTCGTTTAACTCTTTCTAAGCACCCCACCGCCGGAAATGGCTTCACTGCCGCTGGCGGTGCCGGCATCATTTTGGAGGATTTAACCGGCGAACTTGAAGAGATTACCCCTTTTGCTGGAAACCCATTTTCATTTGCTTCATCTGAAACGTCGCAGATGGTGATGGAACGGATTATGTCACAGTCGCAAGAGGTTTCGCCGCGAACTTCTGGCAGACTGTCTCACAGCAGTGGCCCTCTCAATGGCGCACAAAGTTGTGGTTCATTAACCGACAGTCCACCTGTCTCTCCTTCGGAAATCGACGACGTTAAGTGTGGCCGTTCAAACATCCCTGTAAACCAGTACAGAGTTACTGCCAGTGGCGGAGCCACCACTGCCGGCGGAGGAAAAACTGTTGGGAGATGGCTAAAGGACAGGAAAGAGAAGAAGAAGGAAGAAACAAGAGCTCAGAATGCTCAGCTTCATGCTGCTATTTCTGTTGCTGGTGTGGCTGCAGCCATTGCTGCTATTGCTGCAGCCACTGCAGCTTCTTCTGGTTCTAGCAAAGACGAACATAAAGCTAAAACTGACATGGCTGTTGCCTCTGCTGCAACGTTGGTTGCTGCTCAATGCGTTGAGGCAGCTGAAGTAATGGGTGCTGAACGCGAGCACCTTGCATCAGTCTTGAGTAATGCTGTTAATGTCAAGTCAGCTGGTGATATCATGACACTAACTGCAGCTGCAGCCACTGCCTTACGTGGGGCGGCGACGCTTAAAGCGAGAGCGTTAAAGGAAGTGTGGAACATAGCTGCAGTAATTCCAGTAGATAAAGGTATGGGAGTTGCTGAGAATGGCAGCATTGGCAACTCCAACAGTAGTTTCAGTGGTGAACTTGTCCATCCTGAAGAGAATTTCTTAGGCATTTGCAGCCGAGAGTTTCTCGCTCGAGGCTGCGAGCTTCTGAAACGTACTCGTGAAGGTGATCTTCACTGGAAAATAGTTTCCGTATACATTAACGGAATGAATCAGAGAAGGATGTGGGTCTTCCATTTGGGGATTGATGAAAGATATCGTGTTGGAGGTAATAAAAAACATGCCCGCCTGGCCCGGTCGCCACCTGCTCGAGGGAGGAGAACACCGTCGCTACTTCGGCCTGAAGACCATCCTGCGGGGCGTCGTCGAATTCGAATGCAAGAACGTACGGGAGTACGAGATATGGACTCAAGGCGTGTCTCGGCTGCTAGCCATGGCAGCGGAGAAGAGAGGAGACAGAGTAATCGATTTCAATTTACTGTCGCTAACAGTTTAATCGAAACTGTCGTTTGCAGATTAGAGGCAAACGCAGGCCCTCTTACTAATTTCGAGGTTCTCGACTTTCTAAGATCGAAGGGAGCAGCTAAGGATCCCACTAGGGTTCTTGCGAAAGTGGCACCATCTGAGTACAAGGTTTATGATTATTTGAATCAAACTCCTGCTTCTAATCAAACGAGAGAAGCTATTATTGAGTTTGTTGACAAGTCCAAAAAGTACGATCTAGCGAAAGCTGAAATTCTGAATATCGTTAACTTGCGGCCGATTACTCCGGTTGAGATATTTCCGATTATAGAAGAAAGTGATGTTCGTATGGGAGATGATGGAATTCAAGAGCTTACGGAGATGGTGGAACAGGTGTTCCCCGCACCTCAATCAACATCCGAAGTAGCTCCATGTAAAGAGGCCGAAGCCATGGAGAAGGAGGAAGGAGTTGGGGGTACCGAAGAAGAAACCGTGGTAACAACTTGA 1917 49.45 MEKTATEPWRFEPPPSHSSSVYRPPDTPLEPMEFLSRSWSVSALEVSKAIAPPRLTLSKHPTAGNGFTAAGGAGIILEDLTGELEEITPFAGNPFSFASSETSQMVMERIMSQSQEVSPRTSGRLSHSSGPLNGAQSCGSLTDSPPVSPSEIDDVKCGRSNIPVNQYRVTASGGATTAGGGKTVGRWLKDRKEKKKEETRAQNAQLHAAISVAGVAAAIAAIAAATAASSGSSKDEHKAKTDMAVASAATLVAAQCVEAAEVMGAEREHLASVLSNAVNVKSAGDIMTLTAAAATALRGAATLKARALKEVWNIAAVIPVDKGMGVAENGSIGNSNSSFSGELVHPEENFLGICSREFLARGCELLKRTREGDLHWKIVSVYINGMNQRRMWVFHLGIDERYRVGGNKKHARLARSPPARGRRTPSLLRPEDHPAGRRRIRMQERTGVRDMDSRRVSAASHGSGEERRQSNRFQFTVANSLIETVVCRLEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVAPSEYKVYDYLNQTPASNQTREAIIEFVDKSKKYDLAKAEILNIVNLRPITPVEIFPIIEESDVRMGDDGIQELTEMVEQVFPAPQSTSEVAPCKEAEAMEKEEGVGGTEEETVVTT 638
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6968030 6975273 - CmaCh08G011270.1 Cma08g01127 299822

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g01127 638 SUPERFAMILY HRDC-like 490 604 IPR010997 GO:0000166|GO:0044237
Cma08g01127 638 PANTHER AUXIN CANALIZATION PROTEIN 1 389 - -
Cma08g01127 638 Pfam Plant pleckstrin homology-like region 364 388 IPR013666 -
Cma08g01127 638 PANTHER EXPRESSED PROTEIN 1 389 IPR040269 -
Cma08g01127 638 MobiDBLite consensus disorder prediction 171 199 - -
Cma08g01127 638 MobiDBLite consensus disorder prediction 425 468 - -
Cma08g01127 638 Pfam Auxin canalisation 25 323 IPR008546 -
Cma08g01127 638 MobiDBLite consensus disorder prediction 111 157 - -
Cma08g01127 638 Pfam RNA polymerase Rpb4 496 602 IPR005574 GO:0006352|GO:0030880
Cma08g01127 638 MobiDBLite consensus disorder prediction 111 147 - -
Cma08g01127 638 MobiDBLite consensus disorder prediction 409 470 - -
Cma08g01127 638 MobiDBLite consensus disorder prediction 1 27 - -
Cma08g01127 638 Coils Coil 189 209 - -
Cma08g01127 638 Gene3D - 488 604 IPR038324 -
Cma08g01127 638 SMART rpol4neu2 488 606 IPR006590 -
Cma08g01127 638 MobiDBLite consensus disorder prediction 185 199 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g01127 - - - csv:101203405 598.971
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma08g01127 Cma14g01743 CCT
Cma06g01375 Cma08g01127 CCT
Cma06g01375 Cma08g01127 ECH
Cma08g01127 Cma14g01743 ECH
Cma08g01127 Cma17g00213 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g01127 Cma-Chr8:6968030 Cma17g00213 Cma-Chr17:1093636 0 dispersed
Cma14g01743 Cma-Chr14:12755533 Cma08g01127 Cma-Chr8:6968030 3.17E-93 wgd
Cma17g00210 Cma-Chr17:1085620 Cma08g01127 Cma-Chr8:6968030 8.70E-77 wgd
Cma19g00025 Cma-Chr19:136647 Cma08g01127 Cma-Chr8:6968030 5.36E-105 wgd
Cma02g01787 Cma-Chr2:9973655 Cma08g01127 Cma-Chr8:6968030 3.53E-105 wgd
Cma06g01373 Cma-Chr6:8961997 Cma08g01127 Cma-Chr8:6968030 7.39E-53 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g550 . . . Bda08g00248 . Bpe14g01209 . Bma05g01098 Cmo08g01101 Cmo17g00206 Cma06g01375 Cma14g01743 Car06g01189 Car14g01571 Sed02g1340 Cpe08g00281 Cpe03g01461 Bhi01g00764 Tan10g0794 Cmetu06g0329 Lac12g2255 Hepe05g1583 . Lcy11g1578 Cla06g00607 Cam06g0645 Cec06g0648 Cco06g0651 Clacu06g0632 Cmu06g0626 Cre06g1393 Cone14ag0870 . Cone7ag0275 Cone4ag0268 Lsi05g01634 Csa02g01130 Chy05g00388 Cme06g00578 Blo02g00521 Blo07g00231 Bda11g00595 Bda13g00103 Bpe05g00888 Bpe13g00590 Bma02g00825 Bma06g01569 . Cmo06g01387 Cmo14g01780 Cma08g01127 Cma17g00213 Car08g01008 Car17g00189 Cpe12g00181 Cpe17g00161 . . . . . . . Cla05g00512 Cam05g0563 Cec05g0575 Cco05g0573 Clacu05g0560 Cmu05g0531 Cre05g0600 Lsi09g01298 Csa03g01294 Chy06g00549 Cme05g00481
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000980 3 5 2 5 3 2 4 2 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 2 3 2 2 5 6 1 84
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma08g01127 Cma_Chr08 FPKM 6.860883 7.232381 12.914166 12.576605 16.554754 15.091188 14.839744 6.637109 7.051099 6.66173