Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g01136 ATGGAATGTGTTTTCGGGTTAGTGGGTAATGGTTTCGCCATTGTTGCTGCCGATTCTTCGGCGGTACACAGCATCTTGGTTCATAAATCCGACGAGGACAAGATTATGGTTCTCGACTCTCACAAGCTCGTCGCCGCTAGCGGCGAGCCTGGTGACAGGGTTCAGTTCACTGAGTACATTCAGAAGAATGTTTCGTTGTATCAGTTCCGAAATGGGATCCCCTTGACGACTGCTGCTGCTGCTAATTTTACCCGAGGTGAGCTCGCCACCGCCTTGAGAAAGAATCCATACTCTGTAAATATCCTCCTGGCTGGGTACGATAAGGAGAGTGGCCCATCGCTTTACTACATCGACTACATTGCAACACTTCACAAGGTTGAGAAAGGTGCTTTTGGTTATGGATCCTACTTTTCACTCTCTATGATGGACAGACATTACCATAGCGGCATGTCAGTGGATGAGGCGATCGAGTTGGTGGATAAGTGCATCGTGGAGATACGTTCAAGGCTGGTTGTGGCTCCACCAAACTTTGTGATCAAGATTGTAGACAAGGATGGGGCAAGGGAGGTTGCATGGCGTCAATCCATTAAAGACACTGGAGCACTTCCAAATTTACGTTTACACAATTATCGTGAAGTGAACTGGAGCCCCAACATTCCCTTCCAGAGTCTCTGCTGGTTTATAAGCTTCGATCAAAATTTCCTCTTGACAATGGGTACCATTGGTGATAATTGGGGTGATGATTGTTCTGTCATCAAAGACAGAGGAGAGATTTCCTACATCGACTATGAAGATGATAAATCTGTTTGCAGCTACAATCCTATTGAGGAAGGTCCAATTATCATTTCAGTGCCATTTGCTTTTGTGAATGGCAAACCACAATCAGTTTTTGTAGGAGAATCAGTGGCAGATGCAATTACGATCAAGAACACCACCGATGAATCGGTGGACCTATGGGCTGTTAATATTTATGCATCCAATCCCGAGAACTCGTTTACGCTCTCTCTAATGGAGCCCCCTTCGGCAAATGCGAACATCGAAGTTGTACAAGCTTTTTTGGAGTCCTTTTCGTTGGAGGATAGAATGATCCATCCAGACGAGACTCTTACTGTATGGCTGTCTTGCAAACCGAAAGAAATTGGCTTGCACACAACCGTTGTGCATTTTGATGTTGGCAATGAGAGAATAGAACGCGTTTCTTTTCTGTTAGCAGATGATAAGATTTCCCAGTCATTGGCTTCTAGGAAGCCGTATTCAAGAGATAGAAAAAAGAGGCATGAGGTAGCAGACTCTTATATTCCTGGCTCACGTCCCATAAGAACGCAAGGTCGAGGATTCAAAAATTTTCTTCCCCATTATGATATCCCAAGAAGAATTAGAGATGAACTTAACAGAAAGGAGACTCCTAGTGCTGTTAGGGAAGGACTTAAAAGAGATACCTACGTTCCCTACTTTATGACATTGTTGAACATGGAAGAAATACAATTGGAGGAAGACATGAGAGCTTACGATATGGAACGTGTAACTATGAAAAGAAAGGGATATCATTTTTTGTCCCTTGAGGTTCCAGGGCTTGCTGAGAGAAGGCCTTCACTTGTCCATGGAGACTTTATTCTTGCCAAGATGCCTTCTGGACATGCAAATGACACGGTTAACGCTTATCAGGGCTATATTCATCACGTCGAGGCTGATGAGGTTTACCTAAAATTTGCTCCAGAATTTCACGTTAACCACAGAGACTTCAATCTATACAATGTCCAGTTTACCTATAACAGAATTAACATGAGGAGGTTCTATCAGGCTATTGATGCTGCAGATAGTTTGGCAAAGGAGTTTCTATTCCCATATGAGTTTTCGGATAGAAGAGTTATCAAGACTAATCCACTGGTGCCGATAAATCAAAATATCAATGAGGAACAAATGCGTTGTGTTCAGATGATCCTTGGTTGCAGAGGAGCACCACCTTATTTAGTTCATGGACCTCCTGGTACTGGTAAGACTCAGACCTTGGTGGAAGCTATCCTTCAACTCTACACAACTAGAAAGAATGCTCGTATTCTTGTTTGTGCTCCTTCAAATAGTGCTGCGGACCACATACTGGAGAAACTCCTCAGTGAGGAGGGTGTTGAAATTCGTGATAATGATGTTTTCAGGCTTAATGCAAGCTCACGGCAATATGAGGAAATCAAGCCTGATCACCTTCGTTTTTGTTTCTTTGATGAGCAAATTTTCAAGTGTCCTCCACACAGTGCCCTTGTGCGCTATAGGATTATTGTGTCAACTTATACAAGTACTTCCCTTCTTTATGCAGAAGATATAAAGCGTGGCCACTTCTCTCACATTTTCTTGGATGAGGCTGGCCAAGCTTCAGAGCCAGAAACGATAATTCCTATATCCAACCTCTGTCTTAGGAAAACAGTCGTCGTTCTTGCTGGTGATCCCATGCAATTAGGTCCAGTGATTTACTCTAAAGAAGCAGAAATTTATGGATTGAGTAAATCATATTTGGAAAGGCTTTTTGAATGTGAATATTACTGCACTGGGGATGAAAACTATGTAATAAAGTTATTGAGAAACTATAGATGTCATCCGGATATCTTACATCTTCCTTCTACATTGTTCTATGGTGGTGAATTAATTGCATGTCAAGATGAAAAAAGTTTCCTCACGGATTCAGCAGATATCTTTGAAGCACTTCCTAGTAAGGAGTTTCCTGTTCTTTTCTTTGGTATCCAAGGTTGTGATGAGAGGGAAGGCAACAATCCATCATGGTTCAACCGAATTGAGGTTAGCAAGGTGGTAGAGGTTATAAAGAAACTGACTGCTGGTGGAAATCTGGTCGACGAAAATATTGGGGTCATAACACCCTATCGACAACAAGTGATTAAAATAAGGAAAGCCCTTGATAGCCTTGATATGGTTGATATAAAGGTCGGTAGTGTAGAACAGTTTCAAGGACAAGAGAAGCAAGTGATTATTGTTTCTACTGTTCGATCAACGATCAAACATAACGAGTTTGACAGAACCTACTGTTTGGGGTTTTTAAGTAATCCAAGAAGGTTTAATGTGGCTATTACCCGGGCGATATCTCTTCTGGTTATAATTGGCAATCCCCATATAATCTATCAGGATGTGTATTGGAGCAAGCTATTATGGCAGTGTGTTGACAAAGATTCATATCAAGGTTGCTCCCTCCCTGAAAGGCAGGATCCCACAGATGAGGAACATCCATGCAATAACGAAGAGGGACCATGTTCAGAATTTGAAGGAGCAGGGAAGAATCATGAGGGACAAAGTTCAGGATTTGAAGGAGCTGACCAGAATCAAGATCTGCCGGAGATGGAATTTTCGAGACCAGTTGTTAATGAAGATGAATGGTCTGATGGTTGGAAGCTTCATCAGTTGTCGTTTTCAAATCTCTGCGAGAAATCCAACTGGAGAGCAGGAGACAAGCAAAACGAATTCATACCAGCACAAAGCGAGTCTAGAGAATTATTCTTCTCCAAATACATTCCGCCATTGAGAGGAAAAAAAAAACGAAGACAGAGCGATCAGCTTCGTACTATTCAACGGAAAGCCCCAAATCTGAGGTCCTCAACGAAAGTAACAGAGGCAAATGCCGCCGAATGGAATCGTAGGCGGAGGAGACCGCTCACAGCAAGCGGAAGGAACCGTATCGGATCCGCGAAGCAGAGATGTAAGGCAAACATGGCGAGAGCAAGAGCAGCTCTCAGGTGGCGCATCCGGTCGGCGGCGACATTGCAAACACCCTAA 3774 43.08 MECVFGLVGNGFAIVAADSSAVHSILVHKSDEDKIMVLDSHKLVAASGEPGDRVQFTEYIQKNVSLYQFRNGIPLTTAAAANFTRGELATALRKNPYSVNILLAGYDKESGPSLYYIDYIATLHKVEKGAFGYGSYFSLSMMDRHYHSGMSVDEAIELVDKCIVEIRSRLVVAPPNFVIKIVDKDGAREVAWRQSIKDTGALPNLRLHNYREVNWSPNIPFQSLCWFISFDQNFLLTMGTIGDNWGDDCSVIKDRGEISYIDYEDDKSVCSYNPIEEGPIIISVPFAFVNGKPQSVFVGESVADAITIKNTTDESVDLWAVNIYASNPENSFTLSLMEPPSANANIEVVQAFLESFSLEDRMIHPDETLTVWLSCKPKEIGLHTTVVHFDVGNERIERVSFLLADDKISQSLASRKPYSRDRKKRHEVADSYIPGSRPIRTQGRGFKNFLPHYDIPRRIRDELNRKETPSAVREGLKRDTYVPYFMTLLNMEEIQLEEDMRAYDMERVTMKRKGYHFLSLEVPGLAERRPSLVHGDFILAKMPSGHANDTVNAYQGYIHHVEADEVYLKFAPEFHVNHRDFNLYNVQFTYNRINMRRFYQAIDAADSLAKEFLFPYEFSDRRVIKTNPLVPINQNINEEQMRCVQMILGCRGAPPYLVHGPPGTGKTQTLVEAILQLYTTRKNARILVCAPSNSAADHILEKLLSEEGVEIRDNDVFRLNASSRQYEEIKPDHLRFCFFDEQIFKCPPHSALVRYRIIVSTYTSTSLLYAEDIKRGHFSHIFLDEAGQASEPETIIPISNLCLRKTVVVLAGDPMQLGPVIYSKEAEIYGLSKSYLERLFECEYYCTGDENYVIKLLRNYRCHPDILHLPSTLFYGGELIACQDEKSFLTDSADIFEALPSKEFPVLFFGIQGCDEREGNNPSWFNRIEVSKVVEVIKKLTAGGNLVDENIGVITPYRQQVIKIRKALDSLDMVDIKVGSVEQFQGQEKQVIIVSTVRSTIKHNEFDRTYCLGFLSNPRRFNVAITRAISLLVIIGNPHIIYQDVYWSKLLWQCVDKDSYQGCSLPERQDPTDEEHPCNNEEGPCSEFEGAGKNHEGQSSGFEGADQNQDLPEMEFSRPVVNEDEWSDGWKLHQLSFSNLCEKSNWRAGDKQNEFIPAQSESRELFFSKYIPPLRGKKKRRQSDQLRTIQRKAPNLRSSTKVTEANAAEWNRRRRRPLTASGRNRIGSAKQRCKANMARARAALRWRIRSAATLQTP 1257
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7004098 7011768 + CmaCh08G011360.1 Cma08g01136 299831

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g01136 1257 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 632 1051 IPR027417 -
Cma08g01136 1257 Gene3D - 552 847 IPR027417 -
Cma08g01136 1257 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 1 192 IPR029055 -
Cma08g01136 1257 Pfam AAA domain 751 824 IPR041677 GO:0004386
Cma08g01136 1257 Pfam AAA domain 636 731 IPR041677 GO:0004386
Cma08g01136 1257 ProSiteProfiles Proteasome beta-type subunit profile. 1 182 IPR023333 -
Cma08g01136 1257 MobiDBLite consensus disorder prediction 1064 1108 - -
Cma08g01136 1257 CDD SF1_C_Upf1 862 1054 IPR041679 -
Cma08g01136 1257 PANTHER DNA2/NAM7 HELICASE FAMILY 242 1095 IPR045055 -
Cma08g01136 1257 ProSitePatterns Proteasome beta-type subunits signature. 5 52 IPR016050 GO:0005839|GO:0051603
Cma08g01136 1257 CDD proteasome_beta_type_2 1 192 IPR035206 GO:0010498
Cma08g01136 1257 MobiDBLite consensus disorder prediction 1068 1082 - -
Cma08g01136 1257 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 1 190 IPR029055 -
Cma08g01136 1257 Pfam Proteasome subunit 3 182 IPR001353 GO:0005839|GO:0051603
Cma08g01136 1257 MobiDBLite consensus disorder prediction 1196 1222 - -
Cma08g01136 1257 PANTHER RNA HELICASE SDE3-RELATED 242 1095 - -
Cma08g01136 1257 CDD DEXXQc_Helz-like 637 861 - -
Cma08g01136 1257 Pfam AAA domain 831 1038 IPR041679 -
Cma08g01136 1257 Gene3D - 860 1066 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g01136 K18422 MOV10; helicase MOV-10 [EC:3.6.4.13] - csv:101209925 1576.61
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g01136 Cma-Chr8:7004098 Cma15g00791 Cma-Chr15:3948126 1.09E-49 dispersed
Cma14g01725 Cma-Chr14:12676855 Cma08g01136 Cma-Chr8:7004098 2.79E-118 wgd
Cma17g00223 Cma-Chr17:1138562 Cma08g01136 Cma-Chr8:7004098 2.92E-134 wgd
Cma06g01395 Cma-Chr6:9038276 Cma08g01136 Cma-Chr8:7004098 1.97E-120 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g530 . Blo12g00334 Bda03g00877 . Bpe04g00822 . Bma04g00775 . Cmo08g01110 . . . . . . . . . . . . . . . Cla06g00598 Cam06g0637 Cec06g0640 Cco06g0643 Clacu06g0623 Cmu06g0616 Cre06g1384 Cone14ag0862 . . . . . . . . . . . . . . . . . . Cma08g01136 . Car08g01018 . . Cpe17g00154 . . . . . . . . . . . . . . Lsi09g01306 . . Cme01g01579
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009068 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 4 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma08g01136 Cma_Chr08 FPKM 11.126126 11.166913 15.591756 16.610544 14.722299 16.700087 14.001781 16.401842 16.565939 17.316818