Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g01138 ATGGAGGAGATAGAAACAGTGAAGTGCGAGTGCTGTGGGTTAAAAGAAGAGTGCACACAGCATTACATATCTCAAGTCAAGGCCAACTTCGACGCCAAATGGCTCTGTGGCCTCTGTTCTGAAGCCGTTCATGACGAAATTTTCAGATCCAAAAACCCGCCGCCGTCCGCCGGGATTCAAGACGCCGTCAAAGCCCACATGCTCTTTTGCCGGAAGTTCAAGTCTAACCCCGCCGTTAGAGTCGCCGACGGCATGAAGCAAATCTTAAGAAGACGCTCTTCCGACTTGTCGTCCTCCCACTCCTCTTCTCCTTCTTCTTCCTCCTCATCCTCCACTTCTTCCCAGGTTCGCAACATGTCGTCTTTCTCTTCTTCCTTTACATAA 384 50.26 MEEIETVKCECCGLKEECTQHYISQVKANFDAKWLCGLCSEAVHDEIFRSKNPPPSAGIQDAVKAHMLFCRKFKSNPAVRVADGMKQILRRRSSDLSSSHSSSPSSSSSSSTSSQVRNMSSFSSSFT 127
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7026539 7026922 + CmaCh08G011380.1 Cma08g01138 299833

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g01138 127 MobiDBLite consensus disorder prediction 91 127 - -
Cma08g01138 127 PANTHER EXPRESSED PROTEIN 1 122 - -
Cma08g01138 127 Pfam Protein of unknown function (DUF1677) 4 91 IPR012876 -
Cma08g01138 127 PANTHER OS01G0745000 PROTEIN 1 122 IPR012876 -
Cma08g01138 127 MobiDBLite consensus disorder prediction 90 127 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g01138 - - - bhj:120068012 171.014
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma08g01138 Cma14g01716 CCT
Cma06g01400 Cma08g01138 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g01138 Cma-Chr8:7026539 Cma09g00374 Cma-Chr9:1562498 7.79E-25 dispersed
Cma17g00775 Cma-Chr17:6215086 Cma08g01138 Cma-Chr8:7026539 7.41E-16 dispersed
Cma14g01716 Cma-Chr14:12656811 Cma08g01138 Cma-Chr8:7026539 9.83E-42 wgd
Cma06g01400 Cma-Chr6:9055392 Cma08g01138 Cma-Chr8:7026539 2.58E-41 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g520 Blo01g00124 . . Bda08g00238 . Bpe14g01194 . Bma05g01106 Cmo08g01113 . Cma06g01400 Cma14g01716 Car06g01208 Car14g01550 Sed02g1306 Cpe08g00267 Cpe03g01442 Bhi01g00796 Tan10g0830 Cmetu06g2387 Lac12g2271 Hepe05g1560 . Lcy11g1553 Cla06g00592 Cam06g0631 Cec06g0634 Cco06g0637 Clacu06g0617 Cmu06g0610 Cre06g1378 . . Cone7ag0262 Cone4ag0251 Lsi05g01613 . . Cme06g00601 Blo02g00534 Blo07g00222 Bda11g00583 Bda13g00115 Bpe05g00898 Bpe13g00602 Bma02g00836 Bma06g01560 Sed09g0751 Cmo06g01404 Cmo14g01758 Cma08g01138 . Car08g01021 . . Cpe17g00151 Bhi12g01700 Tan06g2514 Cmetu01g1560 Lac12g2271 Hepe03g0207 . Lcy13g0290 Cla05g00534 Cam05g0585 Cec05g0595 Cco05g0593 Clacu05g0582 Cmu05g0552 Cre05g0621 Lsi09g01312 Csa03g01318 Chy06g00570 Cme01g01573
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001590 4 2 2 3 3 2 3 2 2 2 2 2 3 3 2 3 2 2 3 2 2 2 2 2 2 2 2 4 2 1 70
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma08g01138 Cma_Chr08 FPKM 5.3125 5.675853 2.646651 3.745962 0.868266 0.294601 0.0 0.0 0.0 0.0