Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g01140 ATGGGGACGATCCCCGATCCCGGCGAGTTGACTCACCCGAGTTTTGATGAGTTCCAAAGGCAGACGTCTCTGATGGCGAGCTGTACTCTGCTCTGGAAGGAGCTCTCCGATCATTTTACTAATCTGGAACAAGATCTTCTTAAGAAATCGGAGGCACTGAGGCATAAAATTCAAACCCTAGACCATCAGACTAAGGAGTCTCTTGACGAGCTGGATAAGCGCGAGGTTAGTATCCAGGGCAGTGTTCAGATCGCGCTTAGTAAGGTCGAGAAAAGCATGGAGGCGGCGCTTAAAGCGCTTGAGACAGAGGACGATGAGAATGGTGAAGTCGATGATGGCGATGGATTGTTGTTGAAGCTGAAATCCTTCTGTTTGGGAATGGATTCTGGAGGATTTTGGACGTTTATCACTGGTAAGAAGAAGGAATTGGAAGCATTGAGGGCGAAAATTCATCTGGCTTTAGCTGAATGCATCGATCCACCGAGATTCGTGCTGGAGGCCATCTCGGAGGTGTTTCCACTGGATAAGAGAGTGGAAAAAAGTGATGGAGGGAACGATTTAGGCTGGGCTTGTGTTTTAGTGCTTGAATCGCTGATTCCAGTTGTTGTAGACCCTGTGATAGGGAAGTCAAGGATTTTGGTTACACCTAGCATGAAAGAGCGCGCCAAGGAGATTGCTGAAACTTGGAAGGCGAGCTTGGAAGAGCGAGGTGGAATCGAGAATGTTAGAACACCAGACGTGCACACCTTTTTGCAGCACTTGGTTACTTTTGGGATTGTGAAGAGGGAAGACATTAATTTGTATAGGAAGCTCGTGGTTGGATCGGCCTGGCGTAAGCAGATGCCCAAGCTGGCGGTATCACTTGGCCTTGGTGATATAATGCCTGATATGATTGAAGAACTAATCAGCCGGGGGCAGCAGCTTGATGCCGTGCATTTTACATATGAGGTTGATCTTTTGGATAAGTTCCCTCCTGTTCCACTGCTGAAAGCTTATCTGAAGGATGCAAAGAAAGCTGCAGCTGCCATTTCTGAGGACCCAAATAATGCTGGCAGAGCAATGCACCTTGCTGCACGAAAAGAGCAGTCGGCACTTCGAGCTGTCATCAAGTGCATTGAAGAATACAAGCTTCAGGCTGAGTTCCCTCCAGAAAACCTTAAGAAACGCCTTGAACAGCTTGAAAAGGTTAAGGTTGAGAAAAGAAAGCCTGCTGCAGTCCCTGCCAACAAGAGAACACGTGCAAACAATGGCGGTCCTATGCCTCCTGCCAAGGCTGGTCGCTTGACGAATGCGTACGTATCTTCGTACCCTGCAGCTCCCGGATTCATTAGGTCCCCCTCGCACTCTCAATACCCTGCTGGTGTCCCACCTTACCATTCCCCACCCTCAATGTATGGTAGCAGAAGCCCACCCACAAATCCTTACACTTACTCGCCTGAATCTGCTCCACATGCTGGATACACTTACTCACCGGAAGCTGCTCCACATGCTGGATCCTTTCCCACGCCTCCAATGTCCTATCCTGTATATGGTGGTTACGGCAAGCCAATGGCCCCAGCATATCAACCAGCTTACTACCGATAA 1584 48.99 MGTIPDPGELTHPSFDEFQRQTSLMASCTLLWKELSDHFTNLEQDLLKKSEALRHKIQTLDHQTKESLDELDKREVSIQGSVQIALSKVEKSMEAALKALETEDDENGEVDDGDGLLLKLKSFCLGMDSGGFWTFITGKKKELEALRAKIHLALAECIDPPRFVLEAISEVFPLDKRVEKSDGGNDLGWACVLVLESLIPVVVDPVIGKSRILVTPSMKERAKEIAETWKASLEERGGIENVRTPDVHTFLQHLVTFGIVKREDINLYRKLVVGSAWRKQMPKLAVSLGLGDIMPDMIEELISRGQQLDAVHFTYEVDLLDKFPPVPLLKAYLKDAKKAAAAISEDPNNAGRAMHLAARKEQSALRAVIKCIEEYKLQAEFPPENLKKRLEQLEKVKVEKRKPAAVPANKRTRANNGGPMPPAKAGRLTNAYVSSYPAAPGFIRSPSHSQYPAGVPPYHSPPSMYGSRSPPTNPYTYSPESAPHAGYTYSPEAAPHAGSFPTPPMSYPVYGGYGKPMAPAYQPAYYR 527
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7033356 7036155 - CmaCh08G011400.1 Cma08g01140 299835

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g01140 527 Coils Coil 86 106 - -
Cma08g01140 527 MobiDBLite consensus disorder prediction 401 423 - -
Cma08g01140 527 PANTHER FRIGIDA-LIKE PROTEIN 4A-RELATED 1 522 - -
Cma08g01140 527 PANTHER FRIGIDA-LIKE PROTEIN 3-RELATED 1 522 - -
Cma08g01140 527 Pfam Frigida-like protein 119 403 IPR012474 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g01140 - - - cmax:111494276 1014.6
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma08g01140 Cma17g00231 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g01140 Cma-Chr8:7033356 Cma17g01303 Cma-Chr17:8779088 1.34E-53 dispersed
Cma17g00231 Cma-Chr17:1173252 Cma08g01140 Cma-Chr8:7033356 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g502 . . . . . . . . Cmo08g01117 Cmo17g00219 . . . . . . . . . . . . . . Cla06g00587 Cam06g0625 Cec06g0628 Cco06g0633 Clacu06g0612 Cmu06g0605 Cre06g1373 Cone14ag0852 Cone15ag0831 . . . . . . Blo02g00540 . . Bda13g00125 . . Bma02g00849 . Sed04g1907 . . Cma08g01140 Cma17g00231 Car08g01024 Car17g00211 Cpe12g00194 Cpe17g00149 Bhi12g01705 Tan06g2519 Cmetu01g0765 Lac12g2276 Hepe03g0202 . Lcy13g0286 . . . . . . . Lsi09g01317 . . Cme01g01568
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005119 1 1 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 2 1 1 1 1 1 2 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma08g01140 Cma_Chr08 FPKM 106.425758 109.310577 131.532761 138.250122 187.651932 185.101837 179.179901 252.376465 259.607697 245.088104