Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g01141 ATGGCCGGCGGTAACAATACAAGCAAGCCGTCTCAGAAGCCTCCTTCTTCTTCCACCGCCCCTTCTAACCGGAAATCCCGCTGGGAGTCCTCCACCAACAATCCTCCCTCCGATCCCAAATCCGATTCTAAATCTTCCAAACCCCATAATCCTTCCTCGAAGGTTGCAATTAGTCCCAATGCAACTCATCCCAAGCATCCCGCCGACAAGGCTGCTAATCCAACTCCGGCATCGGCTCCTCTCCATTCACCTGGAGTTCCTCTTCCCTTTTCCGATCCCTCGGATCTTGGCCCACCGCCTCCGCCGTCTTATGGATTCCACATGCTCGATCGTCGCACGATTGTTCTTGCTGATGGAAGCGTACGGTCGTACTTTGCTCTCCCTCTGGACTATCAAGATTTTACTCCGCCTGCAAGGCCCATGGATCTTGCTGCTCGGTTTTTACCAATGGGGTCCGGTGGTCCTGGCCGTGAATATGGTGGATTTGACCGTCGGTTCCCCCCCGGTGGCCCTATGAGTCCAAATGAATTTCGGGGTGTTCGGGAAGAACAGTTTGCGCGTTCCAGGCCTCAAGAGCACTGGAACTCTCGAGGGACTGACGAACGTGGTGGTCCTGCAGAATTTTCGATGAAGAGGAAATTCAATGACGACAATGAGAAAGACAGGAAGGATGAGAAAGACGAAATGTGTAGGCGACAACAGCAATTCTTGCACAATGAGAATGCAAATGGGTTTCATACTGGTTCTGGCGAACGGCGGGGTGATTTTTTGGCGGGAACGAGTGATCCATATGGTCGAACAGAAGATATAAGGTTCTCGAAGTACATGCGAGTTGGTGGTAGTTATGAAAACGAAGGTTTAAGGCCAGGTAGCGGTCACAATGTAGCTCCTAAATATTTGGAAGTTGACCAGAATGCATTGAGAAAGGCATTCCTTCACTTTGTGAAGACTATCAATGAAAACGCAACTCAGAAAAAGAATTATTTGGAGGACGGGAAACATGGGCGTCTTCAATGTCTTGCTTGTTCAAGGTCCTCTAGAGATTTTCCAGATATGCATGGCCTTATTATGCACACATACAACTGTGATAGCGCTGACTTGCTAGTAGATCATCTGGGTTTACACAAAGCTCTTTGTGTATTAATGGGGTGGAACTACTCAAAGCCTCCTGATAGTTCAAGAGGGTACCGGTATCTATCTGCTGATGAAGCAGCAGCTAACCAGGAGGATCTGATTATGTGGCCTCCTCTAGTTATCATCCATAATACAATTATTGGAAAGGGTAAAGATGGGCGCATGGAGGGTTTGGGAAACAAGGCAATGGATAGTAAAATTAGAGTTAATGAACTTGAGGTTATATCTGAACCCTCCATGAAGGAGTTGATGGCACACGCTTATGAGAAAACTTGTTTGATGGATCAATATTTTCAAATTGAACTGTCTGGCCTCAATGAAGCCAAGAGACTGGCTGAATTTTTTGAGAAGGACAATCATGGACGTAAAGCTTGGGTTTGCATGCGACCTGCAGCATTGGGCAATGATGATGATAAAAACCCAAACCTTGTGAAGGTGGATGAAAAGACTGGAGAGAGGAATAGAGTTTTCTATGGCTATCTTGCAACTGCAGCTGATATGGACAAAGTTGATTTCGATACAAGGAAGAAGGTAGCCATAGAGAGCTATAGGGATATCAAATCATCCAGATTGTTCTTCATTTCTTAG 1722 46.52 MAGGNNTSKPSQKPPSSSTAPSNRKSRWESSTNNPPSDPKSDSKSSKPHNPSSKVAISPNATHPKHPADKAANPTPASAPLHSPGVPLPFSDPSDLGPPPPPSYGFHMLDRRTIVLADGSVRSYFALPLDYQDFTPPARPMDLAARFLPMGSGGPGREYGGFDRRFPPGGPMSPNEFRGVREEQFARSRPQEHWNSRGTDERGGPAEFSMKRKFNDDNEKDRKDEKDEMCRRQQQFLHNENANGFHTGSGERRGDFLAGTSDPYGRTEDIRFSKYMRVGGSYENEGLRPGSGHNVAPKYLEVDQNALRKAFLHFVKTINENATQKKNYLEDGKHGRLQCLACSRSSRDFPDMHGLIMHTYNCDSADLLVDHLGLHKALCVLMGWNYSKPPDSSRGYRYLSADEAAANQEDLIMWPPLVIIHNTIIGKGKDGRMEGLGNKAMDSKIRVNELEVISEPSMKELMAHAYEKTCLMDQYFQIELSGLNEAKRLAEFFEKDNHGRKAWVCMRPAALGNDDDKNPNLVKVDEKTGERNRVFYGYLATAADMDKVDFDTRKKVAIESYRDIKSSRLFFIS 573
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7037118 7047190 - CmaCh08G011410.1 Cma08g01141 299836

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g01141 573 MobiDBLite consensus disorder prediction 241 262 - -
Cma08g01141 573 PANTHER RNA RECOGNITION MOTIF XS DOMAIN PROTEIN-RELATED 1 567 - -
Cma08g01141 573 MobiDBLite consensus disorder prediction 1 41 - -
Cma08g01141 573 PANTHER RNA RECOGNITION MOTIF XS DOMAIN PROTEIN 1 567 - -
Cma08g01141 573 MobiDBLite consensus disorder prediction 185 229 - -
Cma08g01141 573 MobiDBLite consensus disorder prediction 1 107 - -
Cma08g01141 573 Pfam XS domain 409 546 IPR005380 GO:0031047
Cma08g01141 573 MobiDBLite consensus disorder prediction 80 105 - -
Cma08g01141 573 Gene3D XS domain 405 569 IPR038588 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g01141 - - - csv:101210911 854.744
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma08g01141 Cma17g00233 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g01141 Cma-Chr8:7037118 Cma04g02528 Cma-Chr4:17311561 1.70E-32 dispersed
Cma17g00233 Cma-Chr17:1184220 Cma08g01141 Cma-Chr8:7037118 0 transposed
Cma17g00232 Cma-Chr17:1178719 Cma08g01141 Cma-Chr8:7037118 2.87E-119 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g500 . . . . . Bpe14g01186 . . Cmo08g01119 Cmo17g00220 . . . . . . . . . . . . . . Cla06g00586 Cam06g0624 Cec06g0627 Cco06g0632 Clacu06g0611 Cmu06g0604 Cre06g1372 . . Cone7ag0251 Cone4ag0245 . . . . . Blo07g00218 Bda11g00576 Bda13g00127 . Bpe13g00607 Bma02g00850 Bma06g01555 Sed04g1906 . . Cma08g01141 Cma17g00233 Car08g01025 Car17g00212 Cpe12g00196 Cpe17g00148 Bhi12g01706 Tan06g2520 Cmetu01g2519 Lac12g2277 Hepe03g0201 . Lcy13g0285 . . . . . . . Lsi09g01318 . . Cme01g01567
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004279 3 1 1 2 2 1 2 1 1 1 1 1 3 1 1 3 1 2 3 1 1 1 1 1 2 1 1 1 1 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma08g01141 Cma_Chr08 FPKM 16.196863 16.771223 16.522938 19.508467 22.664589 21.273735 23.743536 24.956375 22.231709 21.391619