Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g01143 ATGGAGGACGGTGTGAGATCTGGGGGACCATCGGGGGTTTTGGTGAAGACTCGGAACTCGTCCGGTTGCTTAATTGTTAGAAAGAAAGAGGATGGATTAGGGGGCGCCGGTTCTTCGGCCTCACGCTTGCTTCATGCGAAGAAGGAGAAGAAGAGGCCTAGGTTGGTTTTGAGTGATTCTGGGTCCAGTGATGAGGTATTGCTGCCCCATCGTAGACGGGTTGATCCTGAAACCATTCGGGTTTGTAATGGTTTGAATTCTTTTGAAAAGGATGATATGGACGAGACGGGAAGCATCAGAAAGAAGGATAGGTTGCAGTATGTTAAGCGGAATGATGATGTTCTGCTCAACAGGATGGATGTGGATGGTTTAGGAAGAAATATGGGCACCTTAGATGTCTTTGATTTCAACGAGTACGATGACCTCGACGGTGAGATTGAGCAGAGGAAGCATGTTAACGGCAGTGGAGAAAAGCGGTTTCTTGGTTCCATGAACCTGCCTCAACGTGAAATCAAGAGGGAATTTGGAACCACTTCTAGTAGGCATGCTTTGGTGGACAAGAGAAAGAATTTGTATGCAGAAAAAACCAATACCTTTGATCGGGATAGGCCTACGAGAAAGATTAACTTCGACACAGATAGTGATGGAGCTTATGTCCCAACACCCTTGTTAAGGGATAAGTTTAGGGGTCATTCTGATGAAGCAATAAGGGTTCAGGGTAAAAATGGAGTTTTAAAGGTCATGGTAAAAAAGAAGAAGAATGTGAGTGAAACTTCGGATATGTATGATCATCGCAAATTAGAAGAAAGTAGAAAGACTCTAAGGACTGAAGATACTCCGAAGAGGAAAGTGTTAGTTGCTCCTTCAGTTTACCCAGAAACTAAACCTCATGTGAAACAGAATCCCTTTCCTAAGCCAGAGAAGGACCATGCTGATTTTCAAACATCAGCATCAACAAAAAATGGAAAGGGTTGCAGTTGGGATTCAGGTGATAGCGGTGTATCATTGAAGCCCAGAAAAAAGGTTGTTGAAGCTCAGAAATCTACGAAGAGGGCAAGCTCTGAAGTTGAAAAAATTCCATGTGAAGAGACTCCCCCAAGTACAGCAAAGGAAGGAAAAGCAAAACGAGGCAGTGGAACTGAGAAACAAAAGCTACGTGAAAGGATCAGGGGAATGCTCCTTAGTTCTGGCTGGAAAATCGATTACAGACCTAGAAGGAATAGAGATTATTTAGATGCTGTCTATGTTAATCCAACTGGAACAGCATATTGGTCAATTATTAAGGCTTATGATGCCCTTCAAAAGCAATTAAATGAAGAAGGAGCAGAGGCTAAACCCAGTGCTGATGCTTCCTTTACCCCAATCTCAGATGATATTCTCAGTCAATTAACCAGGAAAACTCGAAAGAAAATTGAGAAAGAATGGAAAAGTAAGCAGAGAGATGAAAGTGACAGTGAAAATGCCAAAGAAGCAAGTGCACTGAGATCTGCTGGTACTAAAAATGACGTGGACAGCATGGACAGTGATAGCAACGAAGAAAAATTAAGCTCTTTCATAAAGCAGGGTGGGAAATCTATTAAAAAGAAATTGAACGATAATGGATTTCCTAGTGTTGACTCAAAAGGTCAAAGTTCTAGTAAGTATTCACGTGATGCCAATGCAAAACATTCTTCTGGATTCAGTTCACGTATTTTACATGGAAGAAAAGGTAGAAAGCTTGGATTGTTAGTTCGTCGCTCTAGTAAGGGATTAGATTCAGAGAATGATGGTTTTGTTCCATATACTGGTAAAAGGACTCTGCTGTCCTGGCTTATCGATTCTGGGACTGTGCAGTTGAGCCAAAAGGTTCGTTATATGAACCGCAGACAGACCCGAGTGATGCTGGAAGGGTGGATTACCAGAGATGGCATTCATTGTGGTTGCTGCAGCAAAATCCTCACTGTTTCGAAGTTTGAGATACACGCTGGAAGCAAACTACGACAACCTTTTCAAAACATCTTTCTGGAATCTGGGATTTCTCTTCTGCAATGCCAGATAGATGCTTGGAACAGACAGGAGGAATCTAAACGTCTCAGTTTCCACACATTTGAAATTGAAGGTGACGATCCGAATGATGATACTTGTGGTATATGTGGAGATGGTGGCGACTTGATCTGTTGTGATGGGTGTCCATCAACTTTTCATCAGAGTTGTTTAGACATTCAGATTCCTCCGGGTGATTGGCACTGCCCAAATTGTACCTGCAAGTACTGTGGAGTTGCTAGTGTTGATACTTCTCATGAAAACACTACCAATGTTCTTGAGATATCTAGTTGCATGTTATGCGAGAAAAAATTTCATGAATCATGCATCCCGGAGATGGATACTCATTCCAATGGTTCAGTCACTTCTTTTTGTGGCAAGAATTGCAGAGAGCTTTTTGAGAATTTGCAGAAGTTTCTTGGGGTGAAACACGAATTAGATGCAGGGTTCTCATGGTCTCTTGTCCGTAGAACAAGTGAAGATTCAGATTCATCTCATCGTGGGCATTCACAAAGGATTGAATGCAACTCTAAACTGGCTGTTGCATTAACAGTTATGGATGAATGTTTTTTGTCTATTGTTGACAGGAGGAGTGGGATAAATCTAATTCATAATGTTCTTTATAATATTGGATCAAACTTTTATAGGCTGAATTATAGTGGCTTCTACACTGCTATTTTGGAAAGGGGTGATGAAATCATCTCTGCAGCAACAATCAGGTTTCATGGGACTAAGTTAGCTGAGATGCCATTCATTGGAACCCGTCATATATATAGACGTCAAGGAATGTGCCGTCGTCTTTTTCGTGCAATTGAATCTGCTCTCCGCTTACTTAAGGTTGAGAAACTGATTATACCAGCAATTGCCGAGCTCATGCATACATGGAATGTTATTTTTGGCTTTATCCCTTTGGAGCAATCACTCAAGCAAGAAATGAGATTGATGAATATGCTGGTGTTCCCTGGAACAGATATGTTACAGAAGTTGTTAATCGAAGAGACAATTGTTGAGGAAAATGCTACTACTGCCTCAGGTGCAAAGCAAACGAATTGTAGAAGTACAGAGTTCAGTAGTCCTAAGATGGATGCAGAGACCTCATCTGGACAGGAACCTCAAAGTTGTGACGACACTGAACAGCGTCACTCCAAGAAGACAACAAATGAAGCAGCTGACACTAACCCGGATCCTGAATCCATGCCTGGTTCTCCAAATGATACATCTGTGGTGAATAGTTCTCTGGACGCATCTCGTGAAGTTAAAACTTCTTGCTTTCCAATGGAAACGGAAAATTCAGATTCTGATTCTGGTGATAAATTAGCTGAATGTTCCCCCGATGGGAAATGTTCATCCCCCTCCAACCCGATGGGGATCTCTCTTCCAACCAAAAATAGGCCTGGAATTCAGCATGTTTCAGAAGACCATTCGCAGTCCACTTCTCAATGTATGGCAGCTGATACTCCTTCAGACAGTTTGCTTGAACCTAAGGTTACAGTTTCAGATGAAGGAATCATACGTTCGAATTCTCATGCTGGCCACAAGTTGGTTGAATCTGATTCTCAGAAGAAATCTTTCCCTTCTACTTTAGGCCATGGTACTGATGAGTTTGAAAACAACATACCCGTGATGGATTCTCCTGAATATGATAAGTGTTCGAATAAGATTAATGGTCATGATTTTCGTGAAGACAATGCCCATGCTAATTCTTTTAAACCTGCTCTTTGGGATGAAAATTTTGCTAATGGCGTTGTCGGTGAAAAGCCACTTGTCTCTTCATCTGGTCTGTGTGGCTCTAATGGACGCCCCTCCGAAACTATATCTGATGATGGAATTTGTGGCAGTGAAAATTCTCCACAGACCTGTGGGGAAAAAGTCAGAATTTATTCAACTTTATGCTGTTCGGTGTTAGATCATAATCCACCTTCGGTGATAGTTAACACGATTTTTTCAGCCCTGGAGTTCTACAGATGTGCCCTTGATGGAAGTAGCATGCTTGGAAGATCAGACTTCATGATATGGCCGGAACTTGGGACCGACTTCAGTTAG 4065 41.97 MEDGVRSGGPSGVLVKTRNSSGCLIVRKKEDGLGGAGSSASRLLHAKKEKKRPRLVLSDSGSSDEVLLPHRRRVDPETIRVCNGLNSFEKDDMDETGSIRKKDRLQYVKRNDDVLLNRMDVDGLGRNMGTLDVFDFNEYDDLDGEIEQRKHVNGSGEKRFLGSMNLPQREIKREFGTTSSRHALVDKRKNLYAEKTNTFDRDRPTRKINFDTDSDGAYVPTPLLRDKFRGHSDEAIRVQGKNGVLKVMVKKKKNVSETSDMYDHRKLEESRKTLRTEDTPKRKVLVAPSVYPETKPHVKQNPFPKPEKDHADFQTSASTKNGKGCSWDSGDSGVSLKPRKKVVEAQKSTKRASSEVEKIPCEETPPSTAKEGKAKRGSGTEKQKLRERIRGMLLSSGWKIDYRPRRNRDYLDAVYVNPTGTAYWSIIKAYDALQKQLNEEGAEAKPSADASFTPISDDILSQLTRKTRKKIEKEWKSKQRDESDSENAKEASALRSAGTKNDVDSMDSDSNEEKLSSFIKQGGKSIKKKLNDNGFPSVDSKGQSSSKYSRDANAKHSSGFSSRILHGRKGRKLGLLVRRSSKGLDSENDGFVPYTGKRTLLSWLIDSGTVQLSQKVRYMNRRQTRVMLEGWITRDGIHCGCCSKILTVSKFEIHAGSKLRQPFQNIFLESGISLLQCQIDAWNRQEESKRLSFHTFEIEGDDPNDDTCGICGDGGDLICCDGCPSTFHQSCLDIQIPPGDWHCPNCTCKYCGVASVDTSHENTTNVLEISSCMLCEKKFHESCIPEMDTHSNGSVTSFCGKNCRELFENLQKFLGVKHELDAGFSWSLVRRTSEDSDSSHRGHSQRIECNSKLAVALTVMDECFLSIVDRRSGINLIHNVLYNIGSNFYRLNYSGFYTAILERGDEIISAATIRFHGTKLAEMPFIGTRHIYRRQGMCRRLFRAIESALRLLKVEKLIIPAIAELMHTWNVIFGFIPLEQSLKQEMRLMNMLVFPGTDMLQKLLIEETIVEENATTASGAKQTNCRSTEFSSPKMDAETSSGQEPQSCDDTEQRHSKKTTNEAADTNPDPESMPGSPNDTSVVNSSLDASREVKTSCFPMETENSDSDSGDKLAECSPDGKCSSPSNPMGISLPTKNRPGIQHVSEDHSQSTSQCMAADTPSDSLLEPKVTVSDEGIIRSNSHAGHKLVESDSQKKSFPSTLGHGTDEFENNIPVMDSPEYDKCSNKINGHDFREDNAHANSFKPALWDENFANGVVGEKPLVSSSGLCGSNGRPSETISDDGICGSENSPQTCGEKVRIYSTLCCSVLDHNPPSVIVNTIFSALEFYRCALDGSSMLGRSDFMIWPELGTDFS 1354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7048416 7055617 - CmaCh08G011430.1 Cma08g01143 299838

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g01143 1354 CDD PHD2_CHD_II 708 746 - -
Cma08g01143 1354 ProSiteProfiles Zinc finger PHD-type profile. 705 749 IPR019787 -
Cma08g01143 1354 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 891 961 IPR016181 -
Cma08g01143 1354 MobiDBLite consensus disorder prediction 1015 1047 - -
Cma08g01143 1354 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 695 806 IPR013083 -
Cma08g01143 1354 MobiDBLite consensus disorder prediction 490 504 - -
Cma08g01143 1354 MobiDBLite consensus disorder prediction 1186 1218 - -
Cma08g01143 1354 PANTHER PHD FINGER FAMILY PROTEIN 1 1193 - -
Cma08g01143 1354 MobiDBLite consensus disorder prediction 30 61 - -
Cma08g01143 1354 SMART PHD_3 707 747 IPR001965 -
Cma08g01143 1354 ProSitePatterns Zinc finger PHD-type signature. 708 746 IPR019786 -
Cma08g01143 1354 Pfam PHD-finger 708 749 IPR019787 -
Cma08g01143 1354 MobiDBLite consensus disorder prediction 536 560 - -
Cma08g01143 1354 MobiDBLite consensus disorder prediction 1048 1064 - -
Cma08g01143 1354 MobiDBLite consensus disorder prediction 1065 1104 - -
Cma08g01143 1354 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER PROTEIN 1 1193 - -
Cma08g01143 1354 MobiDBLite consensus disorder prediction 1015 1128 - -
Cma08g01143 1354 Pfam Tify domain binding domain 630 680 IPR032308 -
Cma08g01143 1354 MobiDBLite consensus disorder prediction 334 358 - -
Cma08g01143 1354 MobiDBLite consensus disorder prediction 256 384 - -
Cma08g01143 1354 CDD NAT_SF 900 959 - -
Cma08g01143 1354 SUPERFAMILY FYVE/PHD zinc finger 697 752 IPR011011 -
Cma08g01143 1354 MobiDBLite consensus disorder prediction 300 314 - -
Cma08g01143 1354 MobiDBLite consensus disorder prediction 368 384 - -
Cma08g01143 1354 MobiDBLite consensus disorder prediction 471 489 - -
Cma08g01143 1354 MobiDBLite consensus disorder prediction 256 282 - -
Cma08g01143 1354 MobiDBLite consensus disorder prediction 471 563 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g01143 - - - cmo:103489665 2021.9
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma08g01143 Cma17g00236 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00738 Cma-Chr2:4483943 Cma08g01143 Cma-Chr8:7048416 8.66E-87 dispersed
Cma08g01143 Cma-Chr8:7048416 Cma09g00813 Cma-Chr9:3977043 7.50E-87 dispersed
Cma17g00236 Cma-Chr17:1199775 Cma08g01143 Cma-Chr8:7048416 0 wgd
Cma17g01186 Cma-Chr17:8208913 Cma08g01143 Cma-Chr8:7048416 0 wgd
Cma08g00340 Cma-Chr8:1940676 Cma08g01143 Cma-Chr8:7048416 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g496 . . . Bda08g00235 Bpe04g00832 . Bma04g00785 . Cmo08g01120 Cmo17g00223 . . . . . . . . . . . . . . Cla06g00583 Cam06g0621 Cec06g0623 Cco06g0629 Clacu06g0608 Cmu06g0601 Cre06g1369 Cone14ag0851 . . . . . . . . . . . Bpe05g00903 . . . Sed09g1123 . . Cma08g01143 Cma17g00236 Car08g01026 Car17g00215 Cpe12g00199 Cpe17g00147 Bhi12g01710 Tan06g0978 Cmetu01g0849 Lac12g2278 Hepe03g0198 . Lcy13g0282 . . . . . . . Lsi09g01321 . . Cme01g01562
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006686 1 1 2 1 2 1 2 1 1 1 1 1 2 1 1 3 1 2 2 1 1 1 1 1 1 1 1 1 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35559 PF16135 TDBD 5.00E-22 No_clan Cma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma08g01143 Cma_Chr08 FPKM 10.366291 10.780437 12.226617 12.099683 11.302321 11.171977 12.429333 11.771338 10.171373 11.543834