Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g01145 CTTGCAAATCCTCGATCCCCGACAGTGCCACGAGAAGCCTTTGTTGTGGCACGCGCCAACAAGCAGACTCATGAGTTCTTGGTGAGTATAGCGGATGGTCGTGGCACGATTGTGTCACAGAGTGTGTACCAAGGCTCCGGTTTCCCAACGTTAACCTTTGAGGAACAAACGGAAGCTATTGATTTGGCTCTCAAATACCCACCACTTCTATCCTCCATCGAGAAGAGAGGGCTGAATGTTTCGCATGTTGTGGGCTCGGTTCTTACTATTGGGTGGAAAAACGACGCCAATTACAAGCACACAAGCGAGATAAAGGAGGAAATCTACGGCTTATTAGTAGCTCAAAACACGATTGGCATAAACCACGACCATTTCCTAACTTATTATCTTGATCTCGACATCGATGGCCAAGAGAATTCTTTTGTGAAAGCCAAATTGACGAGCTTTAAAACCGACGGCTCCACGTCGAGGAAGAGTTATTGGTCGGCGGTGAGAGAGGAGGTGAAGAAGGAGTTGGATGCCAGAAGTCTTCCGACGGAGCCAGTAGAGCTCCACATCGTCAACCCAAACAAAGAAACTATAATAGGGAACCAAGTCGGGTACCATTTAATTCCAGGACCAATGCCTCGACCACTCCTTTCGGAGGACGATTATCCGCAGCGACGAGGAGCACTATGTGACCATAATGTATGGATTACGCCGTATAATCGGTTGGAGAAATGGGCCAGCGGAATGAATGGTGAAACAACCTCTGATTATGTCGAAGTTGATCCCACAGGAAGATATGGAAGATACGATGAAGTTCTTGGCAAAGGAGCTTCGAAGACAGTTTACAGAGCCTTTGATGAATACGACGGCATTGAAGTGGCGTGGAATCAAGTGAAGCTTTGTGATTTTCTTCAAACTCCCGAAGATCTCGAACGGCTATACAGAGAAATCCATTTGTTGAAGACTCTAAAACACAAAAACATAATGAAATTTTATTCTTCTTGGGTTGACACTGCGAATAGAAACATTAACTTTGTGACAGAAATGTTCACTTCTGGAACTCTTAGACAGTGA 1062 45.39 LANPRSPTVPREAFVVARANKQTHEFLVSIADGRGTIVSQSVYQGSGFPTLTFEEQTEAIDLALKYPPLLSSIEKRGLNVSHVVGSVLTIGWKNDANYKHTSEIKEEIYGLLVAQNTIGINHDHFLTYYLDLDIDGQENSFVKAKLTSFKTDGSTSRKSYWSAVREEVKKELDARSLPTEPVELHIVNPNKETIIGNQVGYHLIPGPMPRPLLSEDDYPQRRGALCDHNVWITPYNRLEKWASGMNGETTSDYVEVDPTGRYGRYDEVLGKGASKTVYRAFDEYDGIEVAWNQVKLCDFLQTPEDLERLYREIHLLKTLKHKNIMKFYSSWVDTANRNINFVTEMFTSGTLRQ 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7059926 7064583 - CmaCh08G011450.1 Cma08g01145 299840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g01145 353 Pfam Copper amine oxidase, enzyme domain 99 246 IPR015798 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Cma08g01145 353 Gene3D Copper amine oxidase, catalytic domain 86 255 IPR036460 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Cma08g01145 353 SUPERFAMILY Amine oxidase catalytic domain 97 245 IPR036460 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Cma08g01145 353 PANTHER COPPER AMINE OXIDASE 3 95 IPR000269 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Cma08g01145 353 PANTHER COPPER AMINE OXIDASE 96 245 IPR000269 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Cma08g01145 353 Pfam Protein kinase domain 266 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma08g01145 353 Gene3D - 1 49 - -
Cma08g01145 353 Gene3D Phosphorylase Kinase; domain 1 256 344 - -
Cma08g01145 353 SUPERFAMILY Protein kinase-like (PK-like) 257 353 IPR011009 -
Cma08g01145 353 ProSiteProfiles Protein kinase domain profile. 263 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma08g01145 353 PANTHER AMINE OXIDASE 3 95 - -
Cma08g01145 353 PANTHER AMINE OXIDASE 96 245 - -
Cma08g01145 353 SUPERFAMILY Amine oxidase N-terminal region 47 97 IPR016182 GO:0005507|GO:0008131|GO:0009308|GO:0048038
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma08g01145 Cma17g00239 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g01145 Cma-Chr8:7059926 Cma17g00238 Cma-Chr17:1210638 2.44E-64 dispersed
Cma17g00239 Cma-Chr17:1218191 Cma08g01145 Cma-Chr8:7059926 4.35E-13 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68774 PF01179 Cu_amine_oxid 1.40E-29 CL0103 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g01145 K08867 K00276 csv:101222468 258.07