Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g01150 ATGGATAGGAATAGAGAAGCTAGAAGGACGACGACGAACATGGCGGCATCCAACGGCCTATCTAGACGGAGATACAGGAGTAGTAGTCTTCGTGACTCTCCAGAGGACGATGGACCGCTCGAGTTGCAGGATACGGTGAGATTGAGAGATCGAGGAAGCGGGAAGAAAGATCGAGATCGAGACAGGGATAGAGACAGAGATCGAGACAGGGATAGAGATAGAGATAGAGATCGGCTTAGCAGGAGCAAGAGGAGGAGAGCTGATAGATTGATTCATGGCGGTAACAATAGGGAAGATGGAGGGGAAGATAGTTCTGAGGAGAGTGTAAATGACGAAGAGGACGATGAAGACGACGATGGCGGTGGTGCTGCTGGAGCTTCCGTCAGAATGCTTCCTCCGAATCCGGCGACAAATTTGAACCATCGGAAAAGTTATCCACCGGCGAAGAGTTTTAGAGCGGCACCGTCGTGGAAGCCCGCGGATGAGATGATTGGTGTGTCGGTACCGAGAAAAGCCCGTTCAGCCTCCACGAAGCGGTCTCATGAATGTTGGCCAGCAGCGGCAGGCGGCGGAATGGTTACAGAGGCCATTCGCCGGCAGGCTTCGACATCGCCAGTGAGGCCACCAAGTCTTACAGCAATGGCGACGCTTCTTCAGCCGCCAGCCTCGCCGTCTTCTTCCAATGCTTCGGTGAGGAAGAAGCTGAAGCAAGCCGGGCCTAAACTCCGGCCGCCCAAATCCTCCTCAAAGCCATCTTCCATGGCTCAAGACGAGATCGAGATCGAGATTGCTGAAGTCTTGTACGGCATGATGAGACAGCCTCAAGCCCCTCCAAAACAAGTAGCCGATTCCATGAAGTTTGATCCCAAATCCGCCATGGATGCCAAATCCAGAGTTTCATCGCCCATTTCTAACCCCTCTTCAGCTTTGCCTCAGAATTCCAGCTCCTCTGTCACTCCGATATCAGCCACTGCACCCAAGAGGAAGCGACCGCGTCCTGTGAAGTACGACGATGAGAACATGGTGGCTTTCAGTCTTCGGAATAGCCCTGTTTCGTCGACAGCCAAGCCTGAAGCAGCCGATCAACCAACCAACACCGATATACCTTCAACAAATGTGGATAAAGTTTCTGGATCTGCTGGTGAAAATGGAGTTGTTTCAAACGAATCTGGAAATTCCCAGGCCTTACCAGCAACTTCTGAGTCCCATCCAGAAGCCCTGAAGGTGAATACAGCCAGTGTCATGTCCAATTCCAAGCCATTGACTGAAGAATCAGAAGGCAAAGTTATGGGTACAAATAAGGAAGAATCCCAATCGCCCCTGAAGGAATCAAACGGCCATAGATTGGAAGACAAGCGAGAGGATACGACAGCAACCAAATCGTCCACCTTTGACGTTGATAACCAGCGGGATGATAAATACAAGATAGATCTGATGGCTCCTCCACTACGAGCTTCACCAGAAAGGGATGGAGAGATTGATTTTGTGGCCGTAGATGCTAAACCAATGGTCATAGATGCGGACACGGAAATGAAACCTCTGATAAAGGAAGAAGACAAAGGAACAACCAGACTTGGGACTAAAGAAGTTGTGAACGTGGAGTCCAAAGCAATTGCAGTTGAGGAAGGTGATGATTCAAAGAAGCCCATTGTTTGCAAAGATGGAAAGGTTGACCTTCAACTTGATTTAGAGAAAACAACTGGCAGAGATTGTGCCACTGCAAATGTTGTGGATGCCAACAAGTTCCCCCAGTATGTTCTGAAACATCCACCGCCGCAACCGGGCTCCGAGAAGGCTGGATCTGGTGCTTCTCAAGCGAGCTCCCTTCCTTTGCCCATGTCTCTACCTGGCTGGCCAAGTGGGTTGCCTCCTATGGGATATGTGGCTCCTCTGCCAGGAGTTGTGTCGGTGGATGGAAGCGCTTTGCCTACTGCAGCCATGCAGCCGCCAAATTTGCTTTTCCATCAACCCCGGCTGAAGAGGTGTGCGACGCATTTCTACATTGCTCGGAATATATTGTATCATCAGCAAATTGCGAGGATGAATCCATTCTGGCCGGCAGCAGCAGGTTCGGCTTCCTTGTTTGGGCCCAAGCATGGTAATCTCAGCATTGTGCCCTCTGCAGATGTGCAAGGAAATCTACCGAAAAACGGGAAAAATGCAATGCTGGATAAGGGCCAGAGTCTCGGAATGTTTTCGGGTCATGCTGGGAAGGATAGGGGCTCTCAGGCTGTTAATGTTGGTGATGGTGCTCAGAGAAAGCAAATTTTACTTCAGCAAGCTCTACCACCGGGAGCGCCTAGTAATATCCTGCATGGCCCTGCTTTTATTCTGCCTTTGAGTCAGCAGCAGCAGGCAGCTGTAGCCACTTCTGTTCGGCCTGTTTCTGTGAAGTCTCCTCCTCCTAGTGGGAATGCCAATGGCAGTGTGGTTTCAAATTCTTCCTCTGTTAGTACCTCAGCTGTGGCAGCCATTGCCGCACCGGCAATGAGTTTCAACTATTCGGGCGTGCCTGGCAATGAACCACAATATTTAGCCATTTTGCAGAACAATGGATATACATACCCAATTCCAGCGCACGTCGGTGCACCGCCGCCATATAGAGGAACCCACACTCATTCTATGCCGTTCTTCAATGGGTCGTTTTATTCTTCCCAAATGCTTCATCCTTCGCAGCTTCAGCAGCAGCAACCACCTCCTCAGTCTCACCCTCATCAACAGGGCCTTCAGAATGCTAATGCTGCTGCTGCTGCTGCCGCCAATGGTTCCTCGTCGTCTCAAAAGAACCTATCGAATCAGCAGCAGAGGCCACATGGGAGCACTGTCAGTGGGAACTTTCAAGGCTTTCCTGCCTCCAGAAATCAGCCATCTCATTCACAGCAGCAGAATCATGCCTCTCATCAAACTAGGCCACTCGAGTCTGAGATTGGTGGTGAAGATAGCCCGTCGACTGCTGATAGTCGAATGAATCTCGCCAATCTGAGTGTCTATGGTCCAAATTTTCCAATGCCAATGCATACTCCTAATTTTGCTTTGATGACTCCTGCTTCAATGGCGGCTGCAGGTGGTGGGGCACCAAATGACAAGAAACAGCAGCCACAACAACAGCCGCAGGGTCCTAAAGGTCTGGAACCATCTCAAACTATTGCTTTGTCCTTTGCTCCTCCCAATGGGGCACCATCTGCTCCCGGCCTCGACCTTTCATCCATATCACCAAATCATCCTATATTTCAAAGTATTCCTGAGATCACCAGGCAAGGGTATCAACACTTTATGGCTGCAGCTGCAGCTGCACAGGCTGCTCAGCAGAAAAAGATTCTTCGTGTAGCCGAAGAAGGAAAAACTGTGCATACATCTGCTGCAGAGGATGAGAGGAAGAACATGTCTGTGAAGGCTTCTCCAACTGTTGGACAGTCCATTGCCTTCTCTAGAACTGATTTAGCCGAGTCCACAATTCCGGCTGGGGCTGCTCTTGTTGACAGCTCTGCAAGAACTCTTAGAACTTCAGGTTCCGTTATGCCCTCTACAATGAGCACTGTAAATATGTGTGGTTCTCAGCATCCACTGCAGCGAAGTCGTCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAACAACAGATGATTCAGCTTCAAAAGCAACAGCAATATGCAGCTGCAGTGACAAGGACTAAAACATCGGCGACAAGTAATGGCAATGTCTATGCTGAGCACCCTCCTACATCCATGGCTGCCAAGTTTCCTAATGCATTGTCTTCTTTTTCTCAAAATCTTGTCCCAAGTAACAGCAACAGTCCTGCTCAATCTCCTCAGTGGAAGAATTCTGTAAGAACCACCACCTCTTCTCAAGTTCCAACCCCCTCTCTGTCTTCGTCAAATACATCATCCATCAAAAATCTTCCCCAACAGCAGGGCCGTCCGCAGCAAAACCACTCTCAGATCTCTTTTGCAGCTAACCAAAAATCTACCACACAATCACAAGGGCAGCAACCTGCTAGCAGTAATCAGTCACCATCTCCGGGAATGATCGGTTCACCAACTAATTCTTCGATGTCAAAGGGTGCCGGTGGAAGCCCGCGGACAGCTACTTCCAGTTCCATGGGCCATAAAGTTGGTCAATCTTCTTCTTTATCATCACAGCAGACAAAGAATCCTACATCTATGCCCCCCCAGAAGTCGTCTCCTGTTGGTGGGAGAAATGTTACGTCAATTCTTGGCAATAACCAAGTGGCCTCTTCAAATTCTGGAACTAAATTATCCCAACATCCACAGTCACAACAGCAACAGCAACAGCAACATTTGGCGAAGCAAACATTGCAGCAAGCTCAGCTGCTCTTCCCTTACATGCAGGCTCAATTTCCCCATTCAAGTAGCACTGCCACTGCTTCGCCTTCACATTCAAGACGTCGTCCAGAGCAGCAAGCACAGGGCTCGGGAGGAACATCCTCCAATGGAATGCTATCTCTTGTCCACCCTGTTACAATCGGAGGCACCACCACTACTGATCCTGCCAAGGCTGTTGCTGCTGCAGCAGCAGCTGCAGCTAATGCAGCTAATATGAAAGCTGTTGGTGGCTTACCTACACAAGCTATTCTCCATCCTGCTCAGTTTGCTACTACACAGTCCTCTGGTAATCCTCATCAGCTTGTACCTGCAGGTTTTCCTTACGTGCATACTGCTGCAGTGCAAGTGAAATCAACAGAGCAAAAACAACCTGCGGGTGGGTAG 4725 49.78 MDRNREARRTTTNMAASNGLSRRRYRSSSLRDSPEDDGPLELQDTVRLRDRGSGKKDRDRDRDRDRDRDRDRDRDRDRLSRSKRRRADRLIHGGNNREDGGEDSSEESVNDEEDDEDDDGGGAAGASVRMLPPNPATNLNHRKSYPPAKSFRAAPSWKPADEMIGVSVPRKARSASTKRSHECWPAAAGGGMVTEAIRRQASTSPVRPPSLTAMATLLQPPASPSSSNASVRKKLKQAGPKLRPPKSSSKPSSMAQDEIEIEIAEVLYGMMRQPQAPPKQVADSMKFDPKSAMDAKSRVSSPISNPSSALPQNSSSSVTPISATAPKRKRPRPVKYDDENMVAFSLRNSPVSSTAKPEAADQPTNTDIPSTNVDKVSGSAGENGVVSNESGNSQALPATSESHPEALKVNTASVMSNSKPLTEESEGKVMGTNKEESQSPLKESNGHRLEDKREDTTATKSSTFDVDNQRDDKYKIDLMAPPLRASPERDGEIDFVAVDAKPMVIDADTEMKPLIKEEDKGTTRLGTKEVVNVESKAIAVEEGDDSKKPIVCKDGKVDLQLDLEKTTGRDCATANVVDANKFPQYVLKHPPPQPGSEKAGSGASQASSLPLPMSLPGWPSGLPPMGYVAPLPGVVSVDGSALPTAAMQPPNLLFHQPRLKRCATHFYIARNILYHQQIARMNPFWPAAAGSASLFGPKHGNLSIVPSADVQGNLPKNGKNAMLDKGQSLGMFSGHAGKDRGSQAVNVGDGAQRKQILLQQALPPGAPSNILHGPAFILPLSQQQQAAVATSVRPVSVKSPPPSGNANGSVVSNSSSVSTSAVAAIAAPAMSFNYSGVPGNEPQYLAILQNNGYTYPIPAHVGAPPPYRGTHTHSMPFFNGSFYSSQMLHPSQLQQQQPPPQSHPHQQGLQNANAAAAAAANGSSSSQKNLSNQQQRPHGSTVSGNFQGFPASRNQPSHSQQQNHASHQTRPLESEIGGEDSPSTADSRMNLANLSVYGPNFPMPMHTPNFALMTPASMAAAGGGAPNDKKQQPQQQPQGPKGLEPSQTIALSFAPPNGAPSAPGLDLSSISPNHPIFQSIPEITRQGYQHFMAAAAAAQAAQQKKILRVAEEGKTVHTSAAEDERKNMSVKASPTVGQSIAFSRTDLAESTIPAGAALVDSSARTLRTSGSVMPSTMSTVNMCGSQHPLQRSRQQQQQQQQQQQQQMIQLQKQQQYAAAVTRTKTSATSNGNVYAEHPPTSMAAKFPNALSSFSQNLVPSNSNSPAQSPQWKNSVRTTTSSQVPTPSLSSSNTSSIKNLPQQQGRPQQNHSQISFAANQKSTTQSQGQQPASSNQSPSPGMIGSPTNSSMSKGAGGSPRTATSSSMGHKVGQSSSLSSQQTKNPTSMPPQKSSPVGGRNVTSILGNNQVASSNSGTKLSQHPQSQQQQQQQHLAKQTLQQAQLLFPYMQAQFPHSSSTATASPSHSRRRPEQQAQGSGGTSSNGMLSLVHPVTIGGTTTTDPAKAVAAAAAAAANAANMKAVGGLPTQAILHPAQFATTQSSGNPHQLVPAGFPYVHTAAVQVKSTEQKQPAGG 1574
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7089518 7095435 - CmaCh08G011500.1 Cma08g01150 299845

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g01150 1574 MobiDBLite consensus disorder prediction 1452 1488 - -
Cma08g01150 1574 MobiDBLite consensus disorder prediction 25 103 - -
Cma08g01150 1574 MobiDBLite consensus disorder prediction 297 323 - -
Cma08g01150 1574 MobiDBLite consensus disorder prediction 196 258 - -
Cma08g01150 1574 MobiDBLite consensus disorder prediction 270 468 - -
Cma08g01150 1574 MobiDBLite consensus disorder prediction 1 156 - -
Cma08g01150 1574 MobiDBLite consensus disorder prediction 1018 1066 - -
Cma08g01150 1574 PANTHER PROTEIN TIME FOR COFFEE 1 1570 IPR039317 GO:0042752
Cma08g01150 1574 Coils Coil 1193 1213 - -
Cma08g01150 1574 MobiDBLite consensus disorder prediction 1255 1435 - -
Cma08g01150 1574 MobiDBLite consensus disorder prediction 1221 1240 - -
Cma08g01150 1574 MobiDBLite consensus disorder prediction 104 121 - -
Cma08g01150 1574 MobiDBLite consensus disorder prediction 440 468 - -
Cma08g01150 1574 MobiDBLite consensus disorder prediction 588 608 - -
Cma08g01150 1574 MobiDBLite consensus disorder prediction 1169 1201 - -
Cma08g01150 1574 MobiDBLite consensus disorder prediction 888 987 - -
Cma08g01150 1574 MobiDBLite consensus disorder prediction 345 423 - -
Cma08g01150 1574 MobiDBLite consensus disorder prediction 1028 1054 - -
Cma08g01150 1574 MobiDBLite consensus disorder prediction 1221 1236 - -
Cma08g01150 1574 MobiDBLite consensus disorder prediction 10 24 - -
Cma08g01150 1574 MobiDBLite consensus disorder prediction 888 970 - -
Cma08g01150 1574 MobiDBLite consensus disorder prediction 197 233 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g01150 - - - csv:101215514 2102.02
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma08g01150 Cma17g00246 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma17g00246 Cma-Chr17:1252380 Cma08g01150 Cma-Chr8:7089518 0 wgd
Cma17g01175 Cma-Chr17:8170098 Cma08g01150 Cma-Chr8:7089518 1.19E-78 wgd
Cma08g00348 Cma-Chr8:1986984 Cma08g01150 Cma-Chr8:7089518 5.78E-51 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g474 Blo01g00128 Blo12g00324 . Bda08g00233 Bpe04g00837 . Bma04g00791 Bma05g01112 Cmo08g01126 Cmo17g00232 . . . . . . . . . . . . . . Cla06g00571 Cam06g0610 Cec06g0611 Cco06g0617 Clacu06g0597 . Cre06g1358 Cone14ag0842 . . . . . . . . . . . Bpe05g00906 . . . . . . Cma08g01150 Cma17g00246 Car08g01031 Car17g00220 Cpe12g00204 Cpe17g00142 Bhi12g01725 . . Lac12g2296 . . . . . . . . . . Lsi09g01331 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003917 1 4 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 2 1 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma08g01150 Cma_Chr08 FPKM 34.707718 37.25248 66.713356 70.925163 39.340759 40.301201 37.027172 45.210445 39.800034 34.305714