Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g01154 ATGGGATGGTGTAAGAGTGGAAAGTGTGGACATTTTGGTTCAGGTGGTTTCATAATATGGGACATATCAGATGGCCAAGAGGACTACTATTTTGGTGAGCTGTTGCCCATGGCTGTGATTGGGGTCATTGGAGGCTTATTGGGAGCACTATTCAACCAGCTTACTCTTTACATGACTTACTGGCGTCGAAACCATTTGCACAAGAACGGGAACGGAGTCAAGATCATTGAGGTTGGTCTCATATCAGTATTAACGTCTATTATCTCGTTCGGACTACCACTTCTAAGGCAATGCACTCCATGCCCCAAACCTGATCCTGAACTGGGTAATGAATGCCCAAGGCCTCCTGGGATGTATGGGAATTATGTTAACTTTTATTGCAGTAAGGACAATGAATACAATGATCTTGCGACCATCTTCTTCAACACTCAGGTTATGTTTTATACCTTAGCAGTCGTGACGTTTGGTACTGCGGTTCCTGCCGGTCAGTTTGTTCCTGGTATAATGATTGGTTCTACATATGGACGTTTGGTTGGCAAGTTTGTGGTTAGTTTCTACAGGAAACCCAACATTGAAGAGGGAACATATGCTTTGTTGGGTGCTGAATCTTTTCTAGGCCTATATGAAGAGCAGGCTCAATTGAAGGGTATTCCATTACTGGAATCAAGACCAAAGTACCAGATGCGGAAAATTACAGCAAAAGGGGCCTGTGGAAAAAGGTTGATAGAGGATAGCGAAGATTCGGATGCGGCGGAGCTACAATCCGACGAGTGTAAGAGCTCATCGTCCAGATCGAAGAATACATACCCATAG 813 44.28 MGWCKSGKCGHFGSGGFIIWDISDGQEDYYFGELLPMAVIGVIGGLLGALFNQLTLYMTYWRRNHLHKNGNGVKIIEVGLISVLTSIISFGLPLLRQCTPCPKPDPELGNECPRPPGMYGNYVNFYCSKDNEYNDLATIFFNTQVMFYTLAVVTFGTAVPAGQFVPGIMIGSTYGRLVGKFVVSFYRKPNIEEGTYALLGAESFLGLYEEQAQLKGIPLLESRPKYQMRKITAKGACGKRLIEDSEDSDAAELQSDECKSSSSRSKNTYP 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7103231 7112327 - CmaCh08G011540.1 Cma08g01154 299849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g01154 270 Pfam Voltage gated chloride channel 27 206 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cma08g01154 270 MobiDBLite consensus disorder prediction 255 270 - -
Cma08g01154 270 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 206 240 - -
Cma08g01154 270 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 1 206 - -
Cma08g01154 270 PRINTS Chloride channel signature 159 179 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cma08g01154 270 PRINTS Chloride channel signature 194 210 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cma08g01154 270 PANTHER CHLORIDE CHANNEL PROTEIN CLC-D 206 240 - -
Cma08g01154 270 PANTHER CHLORIDE CHANNEL PROTEIN CLC-D 1 206 - -
Cma08g01154 270 SUPERFAMILY Clc chloride channel 27 206 IPR014743 -
Cma08g01154 270 Gene3D Clc chloride channel 3 220 - -
Cma08g01154 270 MobiDBLite consensus disorder prediction 245 270 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma08g01154 Cma17g00249 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g01154 Cma-Chr8:7103231 Cma16g00762 Cma-Chr16:4173796 6.55E-42 dispersed
Cma17g00249 Cma-Chr17:1275208 Cma08g01154 Cma-Chr8:7103231 8.81E-150 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g01154 K05016 - csv:101215989 437.573