Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g01159 ATGGCGGGTCTTTCTTCCGCCATGGCCCTTTTCGTCTTCCTTCTCCTGTGCTTTTCCTTCTTTTCACTGTCTCATTCCCTCAGAGGCTTTTTCATCGATTGCGGCTCCTCTGCTCCGACCACTCACGGTGGCCGCACCTGGCAATCCGATGACGGCTTCGTCTTCAGTGGAATCAACAAGAACGTCACCGGTCCCGTTCTTGACCCTACGCTTTCCACTGTGCGCTCCTTTCCTAGGGTTCTTAATCGTAAATTCTGCTATGTTGTTGGACCGGTTTTTCGTACCCGGAGGTATATGGTTAGAACGACTTACTACTATGGCGGAGTCAACGGCCTTGATTCGCCGCCGGTTTTCGATCAGATTGTTGATGGGACTGTTTGGAGCATGGTGAATACTACCGAGGATTATGCTCTGGGATTGACGTCCTATTACGAGGGGATTTTTGAGGCGAAGGCGAGGTCGATAACTGTGTGCATTGGTTCCAATATGTATACGGATTCGGACCCTTTTCTTTCTGCCTTGGAGGTTGTGACCTTGGAGAATTCTCTTTACAATACGACGGATTTCAACAACTACGGCTTGCGCTTGGTTGCTAGGCATAGTTTTGGGTACAACGGATCCAACTTACGGCATCCAGACGATCAATTTGATCGATTTTGGCAACCATTTGGGAATAGCAGTGGGAACGTAACCAGTAGAACTGTATCTGCCTCTGGTATATGGAATCTCCCTCCATCAAAGATATTTGAAACAGAGCTGAAGACTGATAAACTGGAACCATTGGAGCTGAACTGGCCTCCTATTTCTCTTCCAGGACCAGAAAGCAATTTCACTTATTACATTGCGCTGTACTTTGCTAATGATCATGCTTCATCATCCGATAATTTGAGAGTGTTTAACATAAGTGTGAATGGCATAAAATATTACGGCGATCTAAATGCATCTTCAGCCGGTCATGTCGTTTTTGCTAGTCAGTGGCCTCTTCATGGTCTAACAAATATTACGTTGACTCCCTCTCCTTTGTCAAAACTTGGTCCATTGATCAACGGTGGGGAACTTTTTCACCTTGTGTCTCTTGGAGAAAGAACTCATGCAAAAGATGTTGTCAATCTGGAGAGAGTAAAAGAAAGTCTGAAAAATCCACCACCTGATTGGAATGGCGATCCATGCTTCCCCCATGAATATCGCTGGACAGGAATTACATGTTCTGGTGGCTCTCGAAATCGTGTGGTTACCTTAAACCTTACAAATATGGACCTTTCAGGATCCTTATCATCAAGCATTGCCAATCTTACTGCGTTGTCGGGAATCTGGCTTGGAAACAACAGTTTGTCTGGAACGATTCCTGATCTCAGTCCTCTGAAGTTGTTGGAAATAGTGCATTTGCAAGAGAATAATTTCAGTGGAGAGATTCCATTGTCACTTGGAAACATACCACGCTTGCGGGAATTGTTCTTATACAACAATAATTTGACCGGTGAAGTTCCTCAAAGTCTTCTTAATAAACAACTGAATCTAAGGATTTTTCCGGGGAACCATCTGTTGGCGCCACCACCTCCTGCTTAG 1566 45.08 MAGLSSAMALFVFLLLCFSFFSLSHSLRGFFIDCGSSAPTTHGGRTWQSDDGFVFSGINKNVTGPVLDPTLSTVRSFPRVLNRKFCYVVGPVFRTRRYMVRTTYYYGGVNGLDSPPVFDQIVDGTVWSMVNTTEDYALGLTSYYEGIFEAKARSITVCIGSNMYTDSDPFLSALEVVTLENSLYNTTDFNNYGLRLVARHSFGYNGSNLRHPDDQFDRFWQPFGNSSGNVTSRTVSASGIWNLPPSKIFETELKTDKLEPLELNWPPISLPGPESNFTYYIALYFANDHASSSDNLRVFNISVNGIKYYGDLNASSAGHVVFASQWPLHGLTNITLTPSPLSKLGPLINGGELFHLVSLGERTHAKDVVNLERVKESLKNPPPDWNGDPCFPHEYRWTGITCSGGSRNRVVTLNLTNMDLSGSLSSSIANLTALSGIWLGNNSLSGTIPDLSPLKLLEIVHLQENNFSGEIPLSLGNIPRLRELFLYNNNLTGEVPQSLLNKQLNLRIFPGNHLLAPPPPA 521
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7133693 7137336 - CmaCh08G011590.1 Cma08g01159 299854

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g01159 521 Gene3D - 202 352 - -
Cma08g01159 521 Gene3D Ribonuclease Inhibitor 367 519 IPR032675 -
Cma08g01159 521 PANTHER BNAANNG03040D PROTEIN 11 502 - -
Cma08g01159 521 Pfam Malectin-like domain 32 355 IPR024788 -
Cma08g01159 521 PANTHER OS07G0107800 PROTEIN-RELATED 11 502 - -
Cma08g01159 521 SUPERFAMILY L domain-like 389 507 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g01159 - - - cmax:111494330 1036.94
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g01159 Cma-Chr8:7133693 Cma18g00724 Cma-Chr18:6549239 1.64E-48 dispersed
Cma13g00630 Cma-Chr13:6031521 Cma08g01159 Cma-Chr8:7133693 2.68E-35 dispersed
Cma18g00384 Cma-Chr18:2104095 Cma08g01159 Cma-Chr8:7133693 1.96E-40 dispersed
Cma19g00607 Cma-Chr19:6641186 Cma08g01159 Cma-Chr8:7133693 5.83E-148 transposed
Cma17g00254 Cma-Chr17:1304669 Cma08g01159 Cma-Chr8:7133693 1.61E-25 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g465 . . . . . Bpe14g01176 . . Cmo08g01131 . . . . . . . . . . . . . . . Cla06g00563 Cam06g0603 Cec06g0603 Cco06g0608 Clacu06g0589 Cmu06g0584 Cre06g1350 . . Cone7ag0236 Cone4ag0226 . . . . Blo02g00551 . . Bda13g00134 . . . . . . . Cma08g01159 . Car08g01036 . . Cpe17g00137 Bhi12g01823 . . . Hepe03g0115 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008562 2 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 0 1 1 6 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma08g01159 Cma_Chr08 FPKM 24.821867 25.847277 5.532176 6.046026 6.132974 6.206269 7.03507 12.159615 11.007318 12.990602