Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g01160 ATGAACATGGCTCATCTCGACACCGACCTCGCTTCCATCGACCACCTTCACTCCACCAAGTCCCTCATTTCTGCTCTCAATTTGCTCTCCCGGAACCTCCCGCTTCCTCCCGACCTCTTTCAAGCTGTTTCTTCTATTTATTCCGCTCCTCACCATGAACAAACCGGTGCTCGGATTTATTCGGATGAGCTTATAGATTCTGTTCAAGAGGATATATTGACTGACCTTAGAGATGCTTTGGCAAAGCAGCGTTCAAGTTGCATAACTGGTTCTGGGTTGGAACGTTCAAGAGAAGAGCGTTATCGAGGTTGCATACAACACCGGTTGAATGATCTAGAAGAGTTGCCATCAAGTAGAGGGGAGAACATACAAACAAAGTGCTTACTTGAACTATATGGATTGAAGTTACTAGATTTGCAAAAAAAGGTACGATCTCATGTAAGTTCAGAGTACTGGCTTCGAGCAACTTGTGCACATCCAGACAAACAATTATTTGATTGGGGCATGATGCGATTGCGCCGTCCACCATATGGCATAGGAGATGCTTTTTCCATGGAAGCTGATGATCAATTGTGGAGGAAGCGGGATGCTGAGAGGACATCAAGGTTAGAAGAGGAGGAGAAGAGCCAAATCGAGACTAGGAAAAGAAAGTTTTTTGCTGAGATACTGAATGCTGTTCGTGAATTCCATTTACAAATTCAAGCTTCTATAAAACGTCGGAAACAGAGAAATGACGGAGTTCAGGCATGGCATGGAAGACAAAGGCAACGTGCTACAAGGGCAGAAAAATTGAGGTTCCAAGCACTAAGGGCAGATGATCAAGAAGCTTACATGAGATTGGTCAAGGAGAGCAAGAATGAACGATTAACAACACTTCTTGAAGAAACAAACAAACTACTTGTTAACTTGGGTGCTGCCGTTCAAAGACAGAAAGATTCTAAACTCTCTGATGGCATTGAGGCCCTGGATGAATCTGATGTTGATTTAACCGATTTGGATTCTTCAAAGAATGCAACCCCTCAAGATTTACTCATGGATGAAGATTTAGATGCCATTGATTCTGACCGCAATGATGAAAGTGGTGATTTGCTTGAAGGGCAGCGACAATATAACTCTGCAATTCATTCAATTCAGGAAAAGGTGACTGAGCAGCCTTCCATGCTACAAGGAGGAGAGTTGAGGCCCTACCAAATAGAAGGACTTCAGTGGATGGTTTCGTTATTCAATAACAATCTGAATGGAATATTGGCTGATGAAATGGGACTGGGAAAAACAATACAAACAATCTCATTGATAGCGTACCTCATGGAATATAAGGATGTGACTGGACCTCATCTAATAGTTGCTCCCAAGGCAGTACTGCCAAACTGGATTCATGAATTCACAACATGGGCCCCGAGTATTGTTGCTGTTCTTTACGACGGACGTCAGGAGGAGAGAAAGGCTATAAAGGAGGAGCTGTTGAGCGAAGGAAAATTTTGTGTCTTGATTACACATTATGATCTCATTATGCGAGATAAATCATTTTTGAAGAAAGTACATTGGTATTATATGATTGTTGATGAAGGTCATCGGCTGAAAAATCGTGATTGTGCTCTTGCACAAACACTTGCAGGCTACCAGATCAAACGTAGACTTCTCTTAACTGGTACACCTATCCAGAACAGTTTGCAGGAATTATGGTCCCTGCTTAATTTTCTCCTGCCCCATATATTTAATTCTGTCCAGAATTTCCAGGAGTGGTTTAATGCGCCATTTGCAGATCGGAGTGATGTTACTCTGACTGATGAAGAAGAGTTACTGATCATTCGCCGTCTGCATCATGTTATTAGGCCATTCATATTGAGGAGGAAGAAGGATGAAGTGGAGAAGTATCTACCCGAGAAGTCACAAGTCATACTCAAATGTGATATGTCAGCATGGCAGAAAGTATACTATCAACAAGTCACTTCTATTGGCAGAGTTGACACTGGTTCTGGCAAATCAAAGTCCCTACAAAATTTAACAATGCAGCTGAGGAAGTGTTGTAATCATCCGTATCTTTTTATTTTGGGAGATTATAATATTTGGCGCAAGGAGGAGATCATCAGAGCTTCTGGGAAATTTGAATTACTGGACCGTTTACTCCCAAAGCTACATAGAGCTGGGCATAGAGTCCTGCTTTTCTCACAAATGACCCGTCTTATGGACATTCTTGAAATTTATCTTCAGCTCCACGACTTTAAATATCTGCGACTTGATGGTTCGACAAAGACTGAAGAAAGAGGGACTTTAGTGAAGCAATTTAATGCCCCAGATTCTCCAGTCTTCATGTTTCTTCTAAGTACTCGGGCTGGTGGTTTAGGTTTGAACTTACAAACTGCAGATACTGTTATTATCTTTGACAGTGATTGGAATCCTCAAATGGACCAGCAGGCAGAGGATCGGGCTCATCGCATCGGTCAGAAAAAGGAAGTAAGGGTGTTTGTTCTGGTTAGTGTTGGATCAGTTGAAGAGGTAATCCTGGAGCGTGCAAAACAAAAGATGGGGATTGATGCCAAGGTTATCCAGGCTGGACTTTTCAATACAACTTCAACAGCTCAAGACCGAAGAGAGATGTTGGAGGAGATTATGCGTAGAGGAACAAGCGCGCTTGGAACTGATGTACCAAGTGAGAGAGAAATCAATCGCCTTGCAGCTCGATCAGACGAAGAATTTTGGCTGTTTGAGAAAATGGATGAAGAAAGAAGACAGAAGGAGAAATATAGATCTCGTTTAATGGAAGAACACGAGGTACCTGAATGGGTGTACTCAGTACCAGACAGTAATGAAGAGAAGAACAAGGGTTCGGAACTTGTCGGTGTTGCAGGAAAACGAAAAAGGAAGGAGGTGGTTTATGTGGATACATTGAGTGATTTGCAGTGGATGAAGGCTGTAGAAAATGGAGAAATTCCAAACCTTTCAATGAAAGGAAATAGAAGAGAGACTCCCACACGTGAAGGCAGTGCATCAACCAGCAATATCACCAGCACAAGAGCAGAGGATAAGCTGATAGAATATGATGATAACGTGCCGCTAATGAGTGAGGGAACAAGTGAAGACAAGTCTGGTTTAGAACCAACCCCAGAGGAACAGAAGTCAGAAGTGGGGACGAGTATTAGAAAACACGAATTCCTGGCCGAGTCGGGAAGTGAATGGAGTCGATGCGTAATAACGTGGAAAGCACACAAGAAGAAGCGATCGAGCTATGTCCAGAGTTCTTCAGATTCTAGACATAACTCGAATGGAAGAGGAAACGGATGGGCTTGA 3288 42.73 MNMAHLDTDLASIDHLHSTKSLISALNLLSRNLPLPPDLFQAVSSIYSAPHHEQTGARIYSDELIDSVQEDILTDLRDALAKQRSSCITGSGLERSREERYRGCIQHRLNDLEELPSSRGENIQTKCLLELYGLKLLDLQKKVRSHVSSEYWLRATCAHPDKQLFDWGMMRLRRPPYGIGDAFSMEADDQLWRKRDAERTSRLEEEEKSQIETRKRKFFAEILNAVREFHLQIQASIKRRKQRNDGVQAWHGRQRQRATRAEKLRFQALRADDQEAYMRLVKESKNERLTTLLEETNKLLVNLGAAVQRQKDSKLSDGIEALDESDVDLTDLDSSKNATPQDLLMDEDLDAIDSDRNDESGDLLEGQRQYNSAIHSIQEKVTEQPSMLQGGELRPYQIEGLQWMVSLFNNNLNGILADEMGLGKTIQTISLIAYLMEYKDVTGPHLIVAPKAVLPNWIHEFTTWAPSIVAVLYDGRQEERKAIKEELLSEGKFCVLITHYDLIMRDKSFLKKVHWYYMIVDEGHRLKNRDCALAQTLAGYQIKRRLLLTGTPIQNSLQELWSLLNFLLPHIFNSVQNFQEWFNAPFADRSDVTLTDEEELLIIRRLHHVIRPFILRRKKDEVEKYLPEKSQVILKCDMSAWQKVYYQQVTSIGRVDTGSGKSKSLQNLTMQLRKCCNHPYLFILGDYNIWRKEEIIRASGKFELLDRLLPKLHRAGHRVLLFSQMTRLMDILEIYLQLHDFKYLRLDGSTKTEERGTLVKQFNAPDSPVFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSVEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEEIMRRGTSALGTDVPSEREINRLAARSDEEFWLFEKMDEERRQKEKYRSRLMEEHEVPEWVYSVPDSNEEKNKGSELVGVAGKRKRKEVVYVDTLSDLQWMKAVENGEIPNLSMKGNRRETPTREGSASTSNITSTRAEDKLIEYDDNVPLMSEGTSEDKSGLEPTPEEQKSEVGTSIRKHEFLAESGSEWSRCVITWKAHKKKRSSYVQSSSDSRHNSNGRGNGWA 1095
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7139017 7147391 - CmaCh08G011600.1 Cma08g01160 299855

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g01160 1095 MobiDBLite consensus disorder prediction 979 1048 - -
Cma08g01160 1095 CDD SF2_C_SNF 692 825 - -
Cma08g01160 1095 Gene3D - 623 921 IPR027417 -
Cma08g01160 1095 PANTHER SNF2/RAD54 HELICASE FAMILY 15 1045 - -
Cma08g01160 1095 Coils Coil 194 214 - -
Cma08g01160 1095 MobiDBLite consensus disorder prediction 991 1006 - -
Cma08g01160 1095 Pfam Snf2-ATP coupling, chromatin remodelling complex 908 969 IPR029295 GO:0042393
Cma08g01160 1095 SMART SnAC_2 907 969 IPR029295 GO:0042393
Cma08g01160 1095 MobiDBLite consensus disorder prediction 1069 1095 - -
Cma08g01160 1095 PANTHER ATP-DEPENDENT HELICASE BRM 15 1045 - -
Cma08g01160 1095 Pfam SNF2-related domain 396 681 IPR000330 GO:0005524|GO:0140658
Cma08g01160 1095 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 619 868 IPR027417 -
Cma08g01160 1095 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 405 570 IPR014001 -
Cma08g01160 1095 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 704 871 IPR001650 -
Cma08g01160 1095 MobiDBLite consensus disorder prediction 1079 1095 - -
Cma08g01160 1095 MobiDBLite consensus disorder prediction 1029 1048 - -
Cma08g01160 1095 SMART helicmild6 730 814 IPR001650 -
Cma08g01160 1095 Pfam Helicase conserved C-terminal domain 701 814 IPR001650 -
Cma08g01160 1095 Gene3D - 364 616 IPR038718 -
Cma08g01160 1095 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 369 617 IPR027417 -
Cma08g01160 1095 Coils Coil 905 925 - -
Cma08g01160 1095 SMART ultradead3 389 581 IPR014001 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g01160 - - - cmax:111494329 2133.22
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma08g01160 Cma17g00255 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g01160 Cma-Chr8:7139017 Cma14g01649 Cma-Chr14:12332424 0 dispersed
Cma14g00831 Cma-Chr14:4246054 Cma08g01160 Cma-Chr8:7139017 2.44E-73 dispersed
Cma17g00255 Cma-Chr17:1309258 Cma08g01160 Cma-Chr8:7139017 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g460 . . . . . Bpe14g01173 . . Cmo08g01132 Cmo17g00241 . . . . . . . . . . . . . . Cla06g00562 Cam06g0602 Cec06g0602 Cco06g0607 Clacu06g0588 Cmu06g0583 Cre06g1349 . . . . . . . . Blo02g00553 . . Bda13g00140 . . Bma02g00859 . Sed09g0640 . . Cma08g01160 Cma17g00255 Car08g01037 Car17g00229 Cpe12g00211 Cpe17g00136 Bhi12g01822 Tan06g2636 Cmetu11g0294 Lac12g2383 Hepe03g0122 . Lcy13g0197 . . . . . . . Lsi09g01338 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007862 1 1 1 1 1 1 2 1 1 2 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35560 PF00176 SNF2_N 6.10E-69 CL0023 Cma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma08g01160 Cma_Chr08 FPKM 2.396784 2.148953 5.12854 5.677114 5.852466 5.246108 5.64825 8.99271 8.172742 9.063131