Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g01161 ATGACGATGGAGATACCAGGGCGCATTGTCGCTGTTCTTCTCCTTATGCTGCTTCTCCTCCTCCTCCTCCTCCTATTCATCCTCCTCGTTGCCTGCAAACCATGGCGCTTCTTTTCCTATTCCCTTTCTCGCACCATCAAGGTTCATGACCTTGAGAGACCCCTTGTCTCTGATGCTGCGGTTGTCACTCAAAACCAAATCAATGAACTTCCGAGAGATTATGATTTGGAGGGTGCACTCCAAACTGATGGCCATTTTCGGTCCCCAAGTTTACACGGATTGATCCATAAGCAAAGACTACCTGCTGCATCTCCCCATTTATGTCAGGGTGATAGATTGGTTCCAGATGTAGTTGCTGATCCTTTAGACGATATTTCTGTTGGTCAAACACTTAAACGTTCATATTTCACAAGCCAGATTCCAGAAGTTCGAAAGCATGCGAAACCAAGCGTAGGAAGTGATCAACCCCACGAGTCTGCAAGTCAAGTTATCTCACATGGAAGAAGTTACCTCACTTTGGAGGTTACCTCCGGTCCTTCTCGTGGAGTGCGTTATTCCATACATTCTGCGGACACATCTAGGCTCCAGTTGACCCTTGGAAGAGCACCTCCTAGTGATTTACAGCTAAAGGATTCAGAAGTTTCAGGGAAGCATGCCTCAATAAAATGGAATCTAAATAATATGAAATGGGAGCTTGTGGACCTGGGTAGCTTAAATGGGACCTTATTAAATTCTCAACCAATCAGCAATCCCGATTCTGGAAGTAGACAGTTGAGTGACCCAGTTGAGCTTGCTAGTGGAGATGTTATAACTCTTGGTACAAGCTCCACTGTGTATGTTCAAATTACATCTGAGATTGAGAGCCATATTCCTTTTGGAGTTGGGTTGGCTTCAGATCCAATGGCATTACGTCGAGGTGGAAAGAAATTTGCCATGGAAGATGTTTGCTATTATCAATGGCCTCTTCCTGGGGTTGATCAGTTTGGACTCTTTGGTATCTGCGATGGACATAGTGGAGTAGGGGCTGCCAAATCTGCTAGCGAGATTCTTCCGGAGAAGGTCGCCACAATTCTATCTGATCCACTAAAGAGGGAGAGAGTAGTATCTCTTTGTGATGCTTCAGATGTTCTTAGAGAAGCATTTTCTCAGACTGAAGCTTGCATGAATCACTATTATGAGGGTTGTACTGCCACGGTGCTTTTGGTATGGGCTGATAATGACAATAATTACTTCGTGCAATGTGCGAATGTCGGGGACTCTGCTTGTGTTATGAATGTTCATGGGAAGCTTATAAGGATGACAGAAGACCACAGGATAACTAGCTATTCAGAAAGACTCCGTATAGAACAAGCAGGAGAACCATTGAAAGATGGGGAGACACGTTTGTGTGGCTTGAACCTTGCAAGGATGCTTGGTGATAAGTTTCTTAAACAACAAGACCATCGCTTCAGTTCAGAACCTTATATTAGCGAAGTTGTCCATGTAGATCAAGGAAGCAAAGCTTTTGCAGTGATGGCAAGCGATGGCTTTTGGGATGTGATTGGTTTGAAGAAGGCAATTCAGCTGGTCCTTCAGGCTAGGGAAAGATACTCCACAGGTGCAGAAAAGTCGGCCGAAAAGATGGCCAATTTTTTGTTGGGCGAGGCTAGAACACTGCGTACAAAAGATAACACTTCCATTATTTTCTTAGATTTTGACGTTTCTCATAGAATCACTTGTAAAGTTGAACCGTGA 1734 44.29 MTMEIPGRIVAVLLLMLLLLLLLLLFILLVACKPWRFFSYSLSRTIKVHDLERPLVSDAAVVTQNQINELPRDYDLEGALQTDGHFRSPSLHGLIHKQRLPAASPHLCQGDRLVPDVVADPLDDISVGQTLKRSYFTSQIPEVRKHAKPSVGSDQPHESASQVISHGRSYLTLEVTSGPSRGVRYSIHSADTSRLQLTLGRAPPSDLQLKDSEVSGKHASIKWNLNNMKWELVDLGSLNGTLLNSQPISNPDSGSRQLSDPVELASGDVITLGTSSTVYVQITSEIESHIPFGVGLASDPMALRRGGKKFAMEDVCYYQWPLPGVDQFGLFGICDGHSGVGAAKSASEILPEKVATILSDPLKRERVVSLCDASDVLREAFSQTEACMNHYYEGCTATVLLVWADNDNNYFVQCANVGDSACVMNVHGKLIRMTEDHRITSYSERLRIEQAGEPLKDGETRLCGLNLARMLGDKFLKQQDHRFSSEPYISEVVHVDQGSKAFAVMASDGFWDVIGLKKAIQLVLQARERYSTGAEKSAEKMANFLLGEARTLRTKDNTSIIFLDFDVSHRITCKVEP 577
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7148868 7154733 - CmaCh08G011610.1 Cma08g01161 299856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g01161 577 Pfam Protein phosphatase 2C 304 558 IPR001932 -
Cma08g01161 577 PANTHER PROTEIN PHOSPHATASE 2C 39 576 IPR015655 GO:0004722|GO:0006470
Cma08g01161 577 Gene3D - 300 568 IPR036457 -
Cma08g01161 577 Pfam FHA domain 198 273 IPR000253 GO:0005515
Cma08g01161 577 SUPERFAMILY SMAD/FHA domain 170 280 IPR008984 GO:0005515
Cma08g01161 577 SMART FHA_2 196 248 IPR000253 GO:0005515
Cma08g01161 577 Gene3D - 165 299 - -
Cma08g01161 577 CDD PP2Cc 305 565 IPR001932 -
Cma08g01161 577 PANTHER PROTEIN PHOSPHATASE 2C 70 39 576 - -
Cma08g01161 577 ProSiteProfiles PPM-type phosphatase domain profile. 293 565 IPR001932 -
Cma08g01161 577 CDD FHA 171 279 IPR000253 GO:0005515
Cma08g01161 577 ProSiteProfiles Forkhead-associated (FHA) domain profile. 197 248 IPR000253 GO:0005515
Cma08g01161 577 SUPERFAMILY PP2C-like 306 566 IPR036457 -
Cma08g01161 577 MobiDBLite consensus disorder prediction 143 165 - -
Cma08g01161 577 SMART PP2C_4 287 563 IPR001932 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma08g01161 Cma17g00256 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g01161 Cma-Chr8:7148868 Cma01g01681 Cma-Chr1:11465044 3.81E-19 dispersed
Cma17g00256 Cma-Chr17:1316673 Cma08g01161 Cma-Chr8:7148868 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g01161 K01090 - csv:101217195 952.199