Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma08g01167 | ATGGAACGTGTCAAACCCCGCGGTGAAATTTTTGAGCGGGGATTTCCAATCGATCCATTTCCGCTGGACACTCGAGAATTTCCTGGGGAAGGAAAAGAAAGAACATATAGGACTTGGTTTTGGTTTTCAACTATGGAAATGGATCAAGCTGATTTGAGTGTTCGATTATCTGCGCTTTGGAATATCATTGGTGCAAGAAGAAGCCTAAAAGACGACGGAATTCCTTGCCAAATCGAAGAGGGTGTGTTCTTAGGTTCTATTGGAGCTGCCCATAACAAGGATGAACTGAAGAAATTGAATATCACTCACATTTTAACCATTGCTTGTTCCATGCCACCTGCTAATCCAAATGACTTTGTATATAAAGTAGTTGGAGTCGTGGACACTAGAGACGCCGATATTAAACAGCACTTCGATGATTGTTTCAATTTTATTGAGGAAGGAAGACAATCTGGAGGGGTCTTGATTCATTGCTTTGCTGGAGTATCCAGAAGTGTAACCATTACCGTTGCCTATCTGATGAAAAAGCGTGGTATGAATCTAACTGAAGCATTGGAACATGTCAAGAGTAGACGACCACAGGCTTCTCCGAACGTCGGTTTCATGGTTCAACTCAAGGAATTCGAAACAACTCTTCAAGCTAGCAAAGAGGATGGGATGAAATTGTCAAATGTTTGA | 678 | 41.74 | MERVKPRGEIFERGFPIDPFPLDTREFPGEGKERTYRTWFWFSTMEMDQADLSVRLSALWNIIGARRSLKDDGIPCQIEEGVFLGSIGAAHNKDELKKLNITHILTIACSMPPANPNDFVYKVVGVVDTRDADIKQHFDDCFNFIEEGRQSGGVLIHCFAGVSRSVTITVAYLMKKRGMNLTEALEHVKSRRPQASPNVGFMVQLKEFETTLQASKEDGMKLSNV | 225 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 7179293 | 7183341 | + | CmaCh08G011670.1 | Cma08g01167 | 299862 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma08g01167 | 225 | SMART | dsp_5 | 74 | 211 | IPR020422 | GO:0006470|GO:0008138 | |
Cma08g01167 | 225 | Pfam | Dual specificity phosphatase, catalytic domain | 82 | 210 | IPR000340 | GO:0008138|GO:0016311 | |
Cma08g01167 | 225 | SUPERFAMILY | (Phosphotyrosine protein) phosphatases II | 71 | 214 | IPR029021 | - | |
Cma08g01167 | 225 | PANTHER | DUAL SPECIFICITY PROTEIN PHOSPHATASE | 64 | 216 | - | - | |
Cma08g01167 | 225 | Gene3D | Protein tyrosine phosphatase superfamily | 68 | 222 | IPR029021 | - | |
Cma08g01167 | 225 | ProSiteProfiles | Tyrosine specific protein phosphatases domain profile. | 136 | 193 | IPR000387 | GO:0016311|GO:0016791 | |
Cma08g01167 | 225 | ProSiteProfiles | Dual specificity protein phosphatase domain profile. | 74 | 214 | IPR020422 | GO:0006470|GO:0008138 | |
Cma08g01167 | 225 | PANTHER | DUAL SPECIFICITY PROTEIN PHOSPHATASE 1B | 64 | 216 | - | - | |
Cma08g01167 | 225 | CDD | DSP | 75 | 207 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma04g01778 | Cma-Chr4:8943123 | Cma08g01167 | Cma-Chr8:7179293 | 2.92E-22 | dispersed | |
Cma08g01167 | Cma-Chr8:7179293 | Cma10g00020 | Cma-Chr10:79961 | 2.19E-19 | dispersed | |
Cma16g01120 | Cma-Chr16:8607615 | Cma08g01167 | Cma-Chr8:7179293 | 7.71E-07 | dispersed | |
Cma08g01167 | Cma-Chr8:7179293 | Cma18g00752 | Cma-Chr18:6746297 | 4.78E-24 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma08g01167 | - | - | bhj:120092603 | 320.857 |