Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g01167 ATGGAACGTGTCAAACCCCGCGGTGAAATTTTTGAGCGGGGATTTCCAATCGATCCATTTCCGCTGGACACTCGAGAATTTCCTGGGGAAGGAAAAGAAAGAACATATAGGACTTGGTTTTGGTTTTCAACTATGGAAATGGATCAAGCTGATTTGAGTGTTCGATTATCTGCGCTTTGGAATATCATTGGTGCAAGAAGAAGCCTAAAAGACGACGGAATTCCTTGCCAAATCGAAGAGGGTGTGTTCTTAGGTTCTATTGGAGCTGCCCATAACAAGGATGAACTGAAGAAATTGAATATCACTCACATTTTAACCATTGCTTGTTCCATGCCACCTGCTAATCCAAATGACTTTGTATATAAAGTAGTTGGAGTCGTGGACACTAGAGACGCCGATATTAAACAGCACTTCGATGATTGTTTCAATTTTATTGAGGAAGGAAGACAATCTGGAGGGGTCTTGATTCATTGCTTTGCTGGAGTATCCAGAAGTGTAACCATTACCGTTGCCTATCTGATGAAAAAGCGTGGTATGAATCTAACTGAAGCATTGGAACATGTCAAGAGTAGACGACCACAGGCTTCTCCGAACGTCGGTTTCATGGTTCAACTCAAGGAATTCGAAACAACTCTTCAAGCTAGCAAAGAGGATGGGATGAAATTGTCAAATGTTTGA 678 41.74 MERVKPRGEIFERGFPIDPFPLDTREFPGEGKERTYRTWFWFSTMEMDQADLSVRLSALWNIIGARRSLKDDGIPCQIEEGVFLGSIGAAHNKDELKKLNITHILTIACSMPPANPNDFVYKVVGVVDTRDADIKQHFDDCFNFIEEGRQSGGVLIHCFAGVSRSVTITVAYLMKKRGMNLTEALEHVKSRRPQASPNVGFMVQLKEFETTLQASKEDGMKLSNV 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7179293 7183341 + CmaCh08G011670.1 Cma08g01167 299862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g01167 225 SMART dsp_5 74 211 IPR020422 GO:0006470|GO:0008138
Cma08g01167 225 Pfam Dual specificity phosphatase, catalytic domain 82 210 IPR000340 GO:0008138|GO:0016311
Cma08g01167 225 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 71 214 IPR029021 -
Cma08g01167 225 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE 64 216 - -
Cma08g01167 225 Gene3D Protein tyrosine phosphatase superfamily 68 222 IPR029021 -
Cma08g01167 225 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 136 193 IPR000387 GO:0016311|GO:0016791
Cma08g01167 225 ProSiteProfiles Dual specificity protein phosphatase domain profile. 74 214 IPR020422 GO:0006470|GO:0008138
Cma08g01167 225 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE 1B 64 216 - -
Cma08g01167 225 CDD DSP 75 207 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01778 Cma-Chr4:8943123 Cma08g01167 Cma-Chr8:7179293 2.92E-22 dispersed
Cma08g01167 Cma-Chr8:7179293 Cma10g00020 Cma-Chr10:79961 2.19E-19 dispersed
Cma16g01120 Cma-Chr16:8607615 Cma08g01167 Cma-Chr8:7179293 7.71E-07 dispersed
Cma08g01167 Cma-Chr8:7179293 Cma18g00752 Cma-Chr18:6746297 4.78E-24 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g01167 - - bhj:120092603 320.857