Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g01171 ATGCATTTTATAAATGCAGTAATGTTGACTCGAATGGTGACTCGGAATTCGGGTTTGGAACCGGAAGCCGGTGAAATTCCGTTTGGATCGTTATTATGGTTTACCTACGCCGGGATCTCTTGCGTTCTTGTTCTATTTGCTGGAATCATGTCCGGTTTGACACTTGGTCTCATGTCCCTTGGTCTCGTCGACCTCGAAATTCTTCAACGGAGTGGCACCGCTGAGGAGAAGAAACAAGCAGCGGCTATACTTCCTGTGGTTCAGAAACAGCACCAGCTTCTTGTTACGTTGCTTTTATGCAATGCCATTTCGATGGAGGCACTTCCCATATACTTGGATAAACTTTTTAATCAGTATCTTGCTATAATTCTTTCTGTGACATTTGTATTGTCATTTGGAGAGGTTATACCACAAGCAATATGCACCCGGTATGGGCTTGCTGTAGGTGCCAATTTTGTGTGTCTTGTACGAATTTTGATGGTGATTTGCTATCCAATTGCTTATCCCATTGGGAAGATTCTTGACTGTTTACTGGGACACAATGAGGCGTTGTTTAGGCGTGCACAATTAAAGGCTCTTGTCTCCATCCACAGTCTGGAGGCTGGAAAGGGTGGCGAACTCACCCACGACGAAACAACAATCATTAGTGGTGCTCTAGATTTAACTGAAAAGACAGCTGAAGAGGCTATGACACCCATTGAATCAACTTTTTCTTTGGATGTAAATTCAAAATTGGACTGGGAAGCAATGGGAAAAATCCTTGCTCGTGGTCATAGTCGAGTTCCTGTCTATTCTGGGAATCCAAAGAATGTCATCGGGCTTCTACTGGTGAAAAGTCTTTTAACAGTACGACCTGAAACGGAGACCCAAGTCAGTGCGGTTTCCATTCGGAGGATTCCCAGGGTCCCCTCGGACATGCCTCTTTATGACATATTGAACGAATTTCAGAAAGGGAGTAGCCACATGGCTGCTGTGGTGAAAGTAAAAGGAAAAAACAAGGCTCTTCCTCCTACATTGGATGGAGAAGAATCTGAGGAAAACAAAGGCATGGAATCCCAATTGACAACTCCTTTGCTACGTAAGCAGGACGAGAATTCAGATAATGTAGTCCTTGATATCGATAGAGCTTCCAAGACTTCTGGCATAAGTAGCCAACCTTCTTACCGACGCAATGATGCTTCTTCTATAAATGGGTTGAACCATTATTCAGAGGACATAGAAGATGGTGAAGTTATTGGTATCATCACCCTTGAAGATGTATTTGAAGAACTTTTGCAGGAGGAGATTGTTGATGAAACGGATGAGTATGTTGATGTGCACAAAAGAATTCGTGTTGCTGCAGCTGCGGCTGCTTCTTCTATGGCAAGAGCTCCATCAATTAGGAGATTAACTGTTCAGAAGTCGGGGTTTGGAATGGTATCCTTTTACCAGCAGGTCGCTGCAAGACAAGAAGAGAAAGAAGAGCATCATGCAGAATTCTTGAGGTCGAGAGTAAAGCAATTTCTTGCTTATTTTCGTGTTGTGCATCTCTCACATGCGGTTTCTGCTCCTCCATCGTCTCTGGAATCTTGA 1572 43.64 MHFINAVMLTRMVTRNSGLEPEAGEIPFGSLLWFTYAGISCVLVLFAGIMSGLTLGLMSLGLVDLEILQRSGTAEEKKQAAAILPVVQKQHQLLVTLLLCNAISMEALPIYLDKLFNQYLAIILSVTFVLSFGEVIPQAICTRYGLAVGANFVCLVRILMVICYPIAYPIGKILDCLLGHNEALFRRAQLKALVSIHSLEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNVIGLLLVKSLLTVRPETETQVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKVKGKNKALPPTLDGEESEENKGMESQLTTPLLRKQDENSDNVVLDIDRASKTSGISSQPSYRRNDASSINGLNHYSEDIEDGEVIGIITLEDVFEELLQEEIVDETDEYVDVHKRIRVAAAAAASSMARAPSIRRLTVQKSGFGMVSFYQQVAARQEEKEEHHAEFLRSRVKQFLAYFRVVHLSHAVSAPPSSLES 523
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7209028 7215039 + CmaCh08G011710.1 Cma08g01171 299866

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g01171 523 MobiDBLite consensus disorder prediction 333 355 - -
Cma08g01171 523 Gene3D - 386 432 IPR046342 -
Cma08g01171 523 CDD CBS_pair_CorC_HlyC_assoc 225 330 IPR044751 -
Cma08g01171 523 Gene3D - 211 350 IPR046342 -
Cma08g01171 523 SUPERFAMILY CBS-domain pair 215 426 IPR046342 -
Cma08g01171 523 Pfam Cyclin M transmembrane N-terminal domain 39 207 IPR002550 -
Cma08g01171 523 PANTHER DUF21 DOMAIN-CONTAINING PROTEIN 2 485 - -
Cma08g01171 523 ProSiteProfiles CNNM transmembrane domain profile. 29 211 IPR002550 -
Cma08g01171 523 PANTHER ANCIENT CONSERVED DOMAIN PROTEIN-RELATED 2 485 IPR045095 GO:0010960
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g01171 K16302 CNNM; metal transporter CNNM - csv:101215393 829.706
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma08g01171 Cma17g00273 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g01171 Cma-Chr8:7209028 Cma19g00517 Cma-Chr19:6055358 3.60E-147 dispersed
Cma17g00273 Cma-Chr17:1418758 Cma08g01171 Cma-Chr8:7209028 0 wgd
Cma19g00052 Cma-Chr19:290976 Cma08g01171 Cma-Chr8:7209028 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g425 . . . Bda08g00390 Bpe04g01193 Bpe14g01325 Bma04g01184 Bma05g00943 Cmo08g01144 Cmo17g00260 . . . . . . . . . . . . . . Cla06g00543 Cam06g0586 Cec06g0583 Cco06g0591 Clacu06g0573 Cmu06g0567 Cre06g1333 Cone14ag0819 Cone15ag0815 . . . . Chy11g01433 . . . . . Bpe05g00754 . . . . . . Cma08g01171 Cma17g00273 Car08g01049 Car17g00248 Cpe12g00226 Cpe17g00123 Bhi12g01796 . . . . . . . . . . . . . Lsi09g01359 . . Cme11g01938
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001077 3 9 2 2 3 2 3 2 2 2 2 2 3 1 1 3 2 4 3 2 2 2 2 2 2 2 2 9 2 2 80
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma08g01171 Cma_Chr08 FPKM 1.77 1.77376 1.734216 0.80915 4.775913 3.965244 4.504938 1.424745 1.341959 0.888351