Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g01177 ATGCAGCACGATCAGAGAAGAAAGTCGTCTATGGATGTGGATTTCTTCACAGAATATGGTGAAGGGAGCAGGTATAAAATAGAGGAAGTAATTGGTAAAGGAAGTTATGGTGTTGTTTGCTCTGCATATGATACTCATACTGGGGATAAAGTTGCAATTAAGAAAATCAACGATATCTTTGAGCATGTCTCTGATGCAACTCGCATTCTTCGTGAGATAAAACTTTTAAGACTATTGAGACATCCAGACATTGTAGAGATAAAGCACATCCTACTACCTCCATCTAGAAGGGAATTCAGGGATATATATGTTGTGTTTGAGCTCATGGAATCTGATTTACACCAAGTTATCAAAGCAAACGACGATTTGACTCCAGAACATTATCAGTTCTTTCTTTACCAGCTTCTTCGTGGCTTGAAATATATACACACAGCAAACGTCTTCCACAGGGACCTAAAACCCAAAAACATCTTAGCAAATGCTGACTGCAAACTCAAGATCTGTGACTTTGGTCTAGCCAGAGTTGCTTTTAATGATACTCCTACTGCTATTTTCTGGACTGACTATGTAGCAACAAGGTGGTACAGGGCACCTGAACTGTGCGGTTCATTTTTCTCAAAGTATACACCAGCAATAGATATATGGAGCATTGGTTGCATCTTCGCAGAGCTTTTAACTGGAAAACCACTTTTCCCTGGAAAGAATGTCGTGCACCAATTAGATTTGATGACAGATTTTCTGGGAACCCCTAATGCAGAAGCCATTGCCAGGATACGAAATGAGAAAGCTCGGAGATACTTAAGCAGTATGCGAAAGAAGAAGTCTGTTCCTTTCTCCCAGAAGTTTCCTCATGCAGATCCCTTAGCACTTCCCTTATTGGAAAGAATGTTGGCTTTTGAGCCAAAGGATCGACCTACAGCAGAGGAGGCCCTTGCAGATCCATATTTTAAAGGCTTAGCGAAGGTTGAAAGAGAGCCATCTGCTCAACCTGTTACTAAGATGGAATTTGAATTTGAGAGACGAAGAATTACCAAAGAAGATGTTAGGGAGCTTATTTACCGGGAAATTCTCGAGTACCATCCAAAGATGTTGAAGGAGTTCTTAGATGGATCAGAACCTACCAGTTTCATGTATCCAAGTGCAGTTGACCATTTTAAGAAGCAATTTGCATACCTTGAAGAACACTATGGAAATGGTGCAACCGTTGCCCCTCCTGAAAGACAACATGCATCCTTGCCTAGGCAATGTGTTTTATATTCAGATAACATGGTACAGAACTCGGCACAAGTTGTGAATGACCTATCCAAATGTTCCATCAAAGAAGTTGAGAGGCCACAAGTGGATAGGACTTGCAATATTCCTTCAACTAGAGCTCCTATTCAAGTTCCTCAATCTATTCAAGGCAATGCTGTAAGGCCTGGAAAAGTTGTTGGCTCTGTGTTGCGATACAACTGTGGGGCTACAGCATCCGCAGTGGTACCAGAAGTTCTTGAACAGCGGAGGACGACCAGAAACCCTTCCATTCCACCACAGTACGCCCCTAATAACTGTTCATATCCTAGAAGAAACTCATCATGTAAAAATGATACGACTGAAGATGAAGTCATTGAAGGTTCGAATGGACTGCAGCCAAAACCTCAGTACATAGCTAGAAAAGTTGCTGCTGCCCAAGGTGGACCAGGAAATAACTGGTACTGA 1698 41.81 MQHDQRRKSSMDVDFFTEYGEGSRYKIEEVIGKGSYGVVCSAYDTHTGDKVAIKKINDIFEHVSDATRILREIKLLRLLRHPDIVEIKHILLPPSRREFRDIYVVFELMESDLHQVIKANDDLTPEHYQFFLYQLLRGLKYIHTANVFHRDLKPKNILANADCKLKICDFGLARVAFNDTPTAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAELLTGKPLFPGKNVVHQLDLMTDFLGTPNAEAIARIRNEKARRYLSSMRKKKSVPFSQKFPHADPLALPLLERMLAFEPKDRPTAEEALADPYFKGLAKVEREPSAQPVTKMEFEFERRRITKEDVRELIYREILEYHPKMLKEFLDGSEPTSFMYPSAVDHFKKQFAYLEEHYGNGATVAPPERQHASLPRQCVLYSDNMVQNSAQVVNDLSKCSIKEVERPQVDRTCNIPSTRAPIQVPQSIQGNAVRPGKVVGSVLRYNCGATASAVVPEVLEQRRTTRNPSIPPQYAPNNCSYPRRNSSCKNDTTEDEVIEGSNGLQPKPQYIARKVAAAQGGPGNNWY 565
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7244497 7249804 + CmaCh08G011770.1 Cma08g01177 299872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g01177 565 Gene3D Transferase(Phosphotransferase) domain 1 111 339 - -
Cma08g01177 565 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 9 479 - -
Cma08g01177 565 ProSitePatterns MAP kinase signature. 60 163 IPR003527 GO:0004707|GO:0005524|GO:0006468
Cma08g01177 565 ProSiteProfiles Protein kinase domain profile. 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma08g01177 565 Gene3D Phosphorylase Kinase; domain 1 40 361 - -
Cma08g01177 565 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 9 479 - -
Cma08g01177 565 SMART serkin_6 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma08g01177 565 SUPERFAMILY Protein kinase-like (PK-like) 22 320 IPR011009 -
Cma08g01177 565 Pfam Protein kinase domain 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma08g01177 565 MobiDBLite consensus disorder prediction 500 525 - -
Cma08g01177 565 ProSitePatterns Protein kinases ATP-binding region signature. 31 55 IPR017441 GO:0005524
Cma08g01177 565 MobiDBLite consensus disorder prediction 500 543 - -
Cma08g01177 565 CDD STKc_TDY_MAPK 24 361 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma08g01177 Cma17g00278 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00039 Cma-Chr2:202860 Cma08g01177 Cma-Chr8:7244497 0 dispersed
Cma08g01177 Cma-Chr8:7244497 Cma11g00304 Cma-Chr11:1510304 0 dispersed
Cma17g00278 Cma-Chr17:1464912 Cma08g01177 Cma-Chr8:7244497 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68775 PF00069 Pkinase 2.90E-67 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g01177 - K04371 csv:101216364 1085.09