Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g01180 ATGAACGTTCCGTACAATTCTTTTCGAACAGTCACCTATCCTCTTCCGTCCCCCATTCATGTTCCTAAATCCCTAGTGGCCCCAAAATTTACCTCACTTTCAGTTGCCCTAAATTCAGGCAAAGTTGGATGCTGGAAAATCGTCCTTAAACCAGTGAGGAAGACGTTTTTTATTGTTAGAGCTTCCAAGAGTGATGATGCTGGAGCTGAGAAGTGGCTGAAATGGTTACCGAAGGGAGCTTTAGCCGCCGATAAAGTCTTGCGCGGCATTGCCGGTGCAACCGCCAGCCCCATCAGCCAGTTCATCTCGTCGCCGGTCACGTTTCTTCACTCTGTAGACTCGCGAATCAAATTGATATGGCTTTTGGCTCTTGTTGTCTTACCAGCAAGATCAAACATCACAATCCGTTTTGGATTAGTGATTTTCTTGGCTTTCCTATCCATATGGACTCTTCCAACCGAGTTATGGAAGGATCAACTGGGAAGAGTTTCTCTACTCTCAGGAATTTTGTTCATCATGTTGGGGCTGGGTGCGGATGGAGTGCCATCTCTCCTCCAATCAAGAACTCCTCCACCTGGAATGATGGGATTGCCTGAGCTTCCTGCATCTCTGGGAGGTTACTCTTATTTAATTGCAAAACTTGGCCCTTTAACTTTTACGAGGAAGGGCTTGTCAATAGCAAGTACATCAGCATGTTTAACTTTTGTTGTCTTCCAAAGTGCAAGTCTCTGCCTCACAACCACAGCCCCCGAGCAACTTGCATTCGCCATACGATGGTTTATGCTTCCTTTGGTGTATTTTGGCGTTCCAGTTGCTGAAATCACCCTTACACTTTTACTTTCTTTGAGATTTGTCAGTCTGGTGTTTGATGAGGTTCGAAATGTTGCGTTAGGGGTTGTATCCCGCAGGATAAACTGGGAACTATTGACCACAATGGAGTCGGTTGACGTTTTCTTTACTTATCTCCGTCGCATTTTCAAAAATATTTTTAGCCATGCAGAGCAGATTTCTCAGGCAATGATTGTAAGAGGTTTCCGAGGGGATAGCAGCAGTCATAAGCTGTATTTCTTATCAAACTCATCAAGCAGAGTGGCAAATATTCTCTCCCTGTTGTGCCTGATTGGTGTCATCAGTGCTTCTGTTTTCTTTGACAAAGTCATCATCTGA 1167 44.73 MNVPYNSFRTVTYPLPSPIHVPKSLVAPKFTSLSVALNSGKVGCWKIVLKPVRKTFFIVRASKSDDAGAEKWLKWLPKGALAADKVLRGIAGATASPISQFISSPVTFLHSVDSRIKLIWLLALVVLPARSNITIRFGLVIFLAFLSIWTLPTELWKDQLGRVSLLSGILFIMLGLGADGVPSLLQSRTPPPGMMGLPELPASLGGYSYLIAKLGPLTFTRKGLSIASTSACLTFVVFQSASLCLTTTAPEQLAFAIRWFMLPLVYFGVPVAEITLTLLLSLRFVSLVFDEVRNVALGVVSRRINWELLTTMESVDVFFTYLRRIFKNIFSHAEQISQAMIVRGFRGDSSSHKLYFLSNSSSRVANILSLLCLIGVISASVFFDKVII 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7264835 7268794 + CmaCh08G011800.1 Cma08g01180 299875

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g01180 388 Pfam Cobalt transport protein 106 350 IPR003339 -
Cma08g01180 388 PANTHER PROTEIN ABCI12, CHLOROPLASTIC 31 384 - -
Cma08g01180 388 PANTHER PROTEIN ABCI12, CHLOROPLASTIC 31 384 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g01180 - - - cmo:103497915 657.907
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g410 . . . Bda08g00387 . . . Bma05g00940 Cmo08g01151 . . . . . . . . . . . . . . . Cla06g00534 Cam06g0576 Cec06g0573 Cco06g0581 Clacu06g0563 Cmu06g0557 Cre06g1325 Cone14ag0808 . . . . . Chy11g01441 . . . . . Bpe05g00751 . . . . . . Cma08g01180 . Car08g01056 . . Cpe17g00116 Bhi12g01783 . . . . . . . . . . . . . Lsi09g01370 . . Cme11g01946
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010673 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma08g01180 Cma_Chr08 FPKM 3.492257 4.90663 10.479891 11.726566 17.127428 14.693784 16.525284 4.662745 5.23988 5.965949