Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g01182 ATGTCGTTCTCATTCTTCAAGCCGTCGAGGCCTAAAACCCCTCAGGAGATGGTCAAATCCATTAAGGAAAGCCTCATGGCCCTCGATACCAAGACCGTCGTCGAAGTTAGAGCTCTCGAGAAGGCCATGGAAGAAGTTGAGAAGAACTTTGTAACTATGAGATGTATGCTTATTGGAGATGCGGAGGTTGAGCCCATTGCGGAGCAAGTTTCACAGCTAACGCAGGAGATATGTAATGAGTGTCTTATCGATCTTCTAATTCACAAGCTGCCTGTTCTTGGATGGGAAGCAAGAAAGGACCTTGTGAATTGTTGGTCCATATTGTTGAAACAAAAGGTTGGCTCCACTTATTGCTGTGTAAACTACATTGAGAACCATTTTGAGTTGCTAGACTTTCTCGTTGTGTGCTACGACAACAAGGAAATTGCCGTAAACTGTGGAAATATGTTAAGGGAATGCATCAAATTCCCAACCCTTGCAAAATACATATTAGAGGCTGCAAGTTTCGAATTGTTCTTCAAGTTTGTGGAGTTACCAAATTTTGACGTTGCATCAGATGCATTTTCTACTTTCAAGGACCTGCTTACCAAACACGAAAATATAGTTTCCGACTTTTTGAGTGCTCATTATGATGAGTTCTTTGACAGATACGAAAAACTCCTGACTTCTTCCAATTATGTAACTAGAAGACAGTCATTGAAGCTTCTATCAGAGTTCTTATTGGAATCTCCGAATTCCCAAATAATGAAGCGTTACATTCTAGAAGTTCGGAATTTGAAAGTAATGATGACCCTATTAAAGGATTCTAGCAAGAACATCCAACTGTCTGCTTTCCACATATTCAAGGTTTTTGTTGCTAATCCTAATAAGCCACGTGAAATCAAGGTTATCGTAGCGAAAAACCACGAAAAGCTTCTGGAATTGCTTCACGATCTTTCTCCTGGGAAAGGTGCGGAAGACGAACAGTTCGAAGAAGAAAAGGAGTTGATTATCAAAGAAATAGAGAGAGTTTCACGCTTGCAACATCTTACTGGTTGA 1038 40.46 MSFSFFKPSRPKTPQEMVKSIKESLMALDTKTVVEVRALEKAMEEVEKNFVTMRCMLIGDAEVEPIAEQVSQLTQEICNECLIDLLIHKLPVLGWEARKDLVNCWSILLKQKVGSTYCCVNYIENHFELLDFLVVCYDNKEIAVNCGNMLRECIKFPTLAKYILEAASFELFFKFVELPNFDVASDAFSTFKDLLTKHENIVSDFLSAHYDEFFDRYEKLLTSSNYVTRRQSLKLLSEFLLESPNSQIMKRYILEVRNLKVMMTLLKDSSKNIQLSAFHIFKVFVANPNKPREIKVIVAKNHEKLLELLHDLSPGKGAEDEQFEEEKELIIKEIERVSRLQHLTG 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7272832 7276951 - CmaCh08G011820.1 Cma08g01182 299877

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g01182 345 Gene3D - 3 337 IPR011989 -
Cma08g01182 345 PANTHER PROTEIN MO25 1 339 - -
Cma08g01182 345 PANTHER CALCIUM-BINDING PROTEIN 39-RELATED 1 339 IPR013878 -
Cma08g01182 345 SUPERFAMILY ARM repeat 12 340 IPR016024 -
Cma08g01182 345 Pfam Mo25-like 5 336 IPR013878 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g01182 K08272 CAB39, MO25; calcium binding protein 39 - csv:101216176 605.905
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma08g01182 Cma17g00282 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g01182 Cma-Chr8:7272832 Cma13g00372 Cma-Chr13:4289350 1.67E-96 dispersed
Cma17g00282 Cma-Chr17:1492112 Cma08g01182 Cma-Chr8:7272832 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g406 . . . Bda08g00367 . . . . Cmo08g01153 Cmo17g00269 . . . . . . . . . . . . . . Cla06g00532 Cam06g0574 Cec06g0571 Cco06g0579 Clacu06g0561 Cmu06g0555 Cre06g1323 Cone14ag0806 Cone15ag0809 . . . . Chy11g01443 . . . . . . . . . Sed07g0944 . . Cma08g01182 Cma17g00282 Car08g01058 Car17g00257 Cpe12g00235 Cpe17g00114 Bhi12g01781 Tan06g2090 . . . . . . . . . . . . Lsi09g01372 . . Cme11g01948
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009271 1 1 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma08g01182 Cma_Chr08 FPKM 13.05343 13.248785 10.137199 10.970606 14.163216 10.460955 14.924567 31.140863 31.080976 35.708168