Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g01183 ATGCGAGGCCATGCTTGGATCAATACCATTCTTCCTGATGAGCTGATCATTGAGATCTTCCGGTGCCTTGACTCCAAGCTGAGTCGCGATGCTTGTTCTCTCGTCTGCAAGCGTTGGCTCAAACTCGAGCGACTCAGCCGAACCACTCTACGAATTGGCGCAACTGGTAGTCCCGAGCTCTTTGTTCATCTCCTTGCTCGCCGTTTCGTCAATATCAGAAATGTCCACATTGACGAACGCTTGGCGATTTCTCTCCCCCTTCATTCAGGAAGAAGACGTCGCAATGAAGTCATGTGCTTGCCATTTAACTCCCACCATGCAACTGATAATACTGGGGCTGAAGGTGCGCTGGAGTCTTCTTATCTGTCAGATGCTGGGCTAATTGCTCTCTCCGTAGGTTTTCCAAATCTGGAGAAACTGAGCTTAATTTGGTGCTCTAACATTTCAAGTCAGGGTTTAACATCCCTTGCTGAGAAGTGTAGGTTTTTGAAGTCGCTGGATCTACAGGGTTGCTATGTTGGGGACCAAGGTGTTGCTGCAGTTGGGGAATTCTGTAAACAACTTGAAGATGTAAATTTGCGTTTTTGTGAAGGGTTGACTGATACTGGTTTGGTTGAATTAGCACGTGGTTGTGGAAAATCATTGAAAACATTTGGTATTACAGCCTGTGCCAAAATAACGGATGTCTCATTAGAAGCTGTGGGTATGCACTGCAAATATCTGGAGTCTTTGTCGCTAGATTCGGAAATTATCCACAACAAAGGAGTGCTTTCTGTAGCCCAAGGATGCCCACTTTTGAAAGTCTTGAAGCTACAGTGTACAAATGTCACAGATGAAGCTTTGGTAGCTGTAGGCTCCTTATGTCCTTCACTGGAATTATTGGCTTTATACAGTTTTCAAGAATTTACCGACAAGGGACTACGTGCCATTGGAGTAGGCTGCAAGAAGTTAAAAAATCTCACTCTAAGTGATTGCTATTTCCTGAGCGACATAGGCTTGGATGCAGTTGCAGCTGGTTGTAAAGGACTAACACATCTTGAAGTTAACGGCTGCCACAACATTGGATCCTTGGGACTAGAATCCATCGGAAAATCTTGCCACCAGCTCACTGAATTGGCTTTGCTGTACTGCCAAAAGATTGTTAACTCTGGTCTTCTTGGAATTGGTCAAAGTTGCAAGTTCTTACAAGCACTCCACTTGGTAGATTGCTCGAGAATTGGAGACGAAGCGATATGTGGCATAGCAAAAGGATGCAGAAATTTGAAGAAACTCCATATTCGTCGATGTTATGAGATTGGGGATGCAGGAATTGTAGCTATTGGCGAGAATTGCCAATTCCTCACAGATTTGAGCCTCAGATTTTGTGACAGGGTTGGTGATGAGGGGCTGATTGCCATTGGCAAGGGTTGTTCCCTTCATCAGCTGAATGTTAGTGGGTGCCATCGCATCGGTGATGTGGGACTTGTAGCCATTGCTAGAGGTTGTCCTCAATTGAGTTACTTGGACGTGAGCGTTCTCGAGAACTTGGGGGATATGGCAATGGCTGAGTTAGGGGAAGGCTGCCCTTTGCTTAAGGACATAGTACTGTCTCACTGTCACCAGATAACGGATGCTGGTTTAATGCATTTAGTGAAGAGATGCACCATGCTTGATTCCTGTCAAATGGTCTATTGTCCTGGCATCACCGCGGCTGGCGTCGCCACTGTCGTATCCAGCTGCCCAAGCGTAAAGAAAATTCTGGTCGAGAAATGGAAGGTGAGCGAGCGAACAAAAAGACGTGCAGGCTCGGTTATTTCCTACCTTTGCGTCGACCTCTAG 1818 46.04 MRGHAWINTILPDELIIEIFRCLDSKLSRDACSLVCKRWLKLERLSRTTLRIGATGSPELFVHLLARRFVNIRNVHIDERLAISLPLHSGRRRRNEVMCLPFNSHHATDNTGAEGALESSYLSDAGLIALSVGFPNLEKLSLIWCSNISSQGLTSLAEKCRFLKSLDLQGCYVGDQGVAAVGEFCKQLEDVNLRFCEGLTDTGLVELARGCGKSLKTFGITACAKITDVSLEAVGMHCKYLESLSLDSEIIHNKGVLSVAQGCPLLKVLKLQCTNVTDEALVAVGSLCPSLELLALYSFQEFTDKGLRAIGVGCKKLKNLTLSDCYFLSDIGLDAVAAGCKGLTHLEVNGCHNIGSLGLESIGKSCHQLTELALLYCQKIVNSGLLGIGQSCKFLQALHLVDCSRIGDEAICGIAKGCRNLKKLHIRRCYEIGDAGIVAIGENCQFLTDLSLRFCDRVGDEGLIAIGKGCSLHQLNVSGCHRIGDVGLVAIARGCPQLSYLDVSVLENLGDMAMAELGEGCPLLKDIVLSHCHQITDAGLMHLVKRCTMLDSCQMVYCPGITAAGVATVVSSCPSVKKILVEKWKVSERTKRRAGSVISYLCVDL 605
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7277504 7283165 + CmaCh08G011830.1 Cma08g01183 299878

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g01183 605 Gene3D - 7 47 - -
Cma08g01183 605 PANTHER F-BOX/LRR-REPEAT PROTEIN 4 12 486 - -
Cma08g01183 605 PANTHER F-BOX/LRR-REPEAT PROTEIN 4 476 580 - -
Cma08g01183 605 Gene3D Ribonuclease Inhibitor 354 605 IPR032675 -
Cma08g01183 605 PANTHER UNCHARACTERIZED 12 486 - -
Cma08g01183 605 PANTHER UNCHARACTERIZED 476 580 - -
Cma08g01183 605 SUPERFAMILY RNI-like 120 357 - -
Cma08g01183 605 Pfam Leucine Rich repeat 343 362 IPR001611 GO:0005515
Cma08g01183 605 Pfam Leucine Rich repeat 443 466 IPR001611 GO:0005515
Cma08g01183 605 Pfam Leucine Rich repeat 188 208 IPR001611 GO:0005515
Cma08g01183 605 Pfam Leucine Rich repeat 418 440 IPR001611 GO:0005515
Cma08g01183 605 Pfam Leucine Rich repeat 521 543 IPR001611 GO:0005515
Cma08g01183 605 Pfam Leucine Rich repeat 470 492 IPR001611 GO:0005515
Cma08g01183 605 Pfam Leucine Rich repeat 159 180 IPR001611 GO:0005515
Cma08g01183 605 Gene3D Ribonuclease Inhibitor 117 353 IPR032675 -
Cma08g01183 605 SUPERFAMILY F-box domain 10 42 IPR036047 GO:0005515
Cma08g01183 605 SMART LRR_CC_2 288 313 IPR006553 -
Cma08g01183 605 SMART LRR_CC_2 314 339 IPR006553 -
Cma08g01183 605 SMART LRR_CC_2 263 287 IPR006553 -
Cma08g01183 605 SMART LRR_CC_2 444 469 IPR006553 -
Cma08g01183 605 SMART LRR_CC_2 366 391 IPR006553 -
Cma08g01183 605 SMART LRR_CC_2 340 365 IPR006553 -
Cma08g01183 605 SMART LRR_CC_2 470 494 IPR006553 -
Cma08g01183 605 SMART LRR_CC_2 134 159 IPR006553 -
Cma08g01183 605 SMART LRR_CC_2 521 546 IPR006553 -
Cma08g01183 605 SMART LRR_CC_2 547 572 IPR006553 -
Cma08g01183 605 SMART LRR_CC_2 392 417 IPR006553 -
Cma08g01183 605 SMART LRR_CC_2 418 443 IPR006553 -
Cma08g01183 605 SMART LRR_CC_2 495 520 IPR006553 -
Cma08g01183 605 SMART LRR_CC_2 160 184 IPR006553 -
Cma08g01183 605 SMART LRR_CC_2 185 210 IPR006553 -
Cma08g01183 605 SMART LRR_CC_2 238 262 IPR006553 -
Cma08g01183 605 SMART LRR_CC_2 212 237 IPR006553 -
Cma08g01183 605 Pfam F-box 11 48 IPR041567 -
Cma08g01183 605 SUPERFAMILY RNI-like 336 586 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g01183 K10268 FBXL2_20; F-box and leucine-rich repeat protein 2/20 - csv:101216664 1107.05
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01815 Cma-Chr1:12055133 Cma08g01183 Cma-Chr8:7277504 4.10E-12 dispersed
Cma08g00600 Cma-Chr8:3406097 Cma08g01183 Cma-Chr8:7277504 1.35E-13 dispersed
Cma08g01183 Cma-Chr8:7277504 Cma12g00338 Cma-Chr12:1717390 2.18E-11 dispersed
Cma11g01453 Cma-Chr11:9585689 Cma08g01183 Cma-Chr8:7277504 5.40E-09 dispersed
Cma11g01893 Cma-Chr11:12553082 Cma08g01183 Cma-Chr8:7277504 3.76E-14 dispersed
Cma16g00201 Cma-Chr16:903290 Cma08g01183 Cma-Chr8:7277504 3.81E-11 dispersed
Cma19g01019 Cma-Chr19:8747249 Cma08g01183 Cma-Chr8:7277504 6.68E-14 dispersed
Cma20g00969 Cma-Chr20:4930175 Cma08g01183 Cma-Chr8:7277504 1.34E-14 dispersed
Cma04g01264 Cma-Chr4:6468901 Cma08g01183 Cma-Chr8:7277504 7.19E-11 transposed
Cma11g01191 Cma-Chr11:7070176 Cma08g01183 Cma-Chr8:7277504 3.04E-17 transposed
Cma14g00033 Cma-Chr14:153420 Cma08g01183 Cma-Chr8:7277504 2.43E-15 transposed
Cma20g00317 Cma-Chr20:1567644 Cma08g01183 Cma-Chr8:7277504 2.85E-17 transposed
Cma17g00284 Cma-Chr17:1497171 Cma08g01183 Cma-Chr8:7277504 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g405 . . Bda03g01248 . . Bpe14g01357 . . Cmo08g01154 Cmo17g00271 . . . . . . . . . . . . . . Cla06g00531 Cam06g0572 Cec06g0570 Cco06g0578 Clacu06g0560 Cmu06g0554 Cre06g1322 . Cone15ag0808 . . . . Chy11g01444 . . . . . . . . . Sed06g0516 . . Cma08g01183 . Car08g01059 Car17g00259 Cpe12g00236 Cpe17g00113 Bhi12g01780 Tan06g2588 Cmetu07g1857 Lac12g2348 . . . . . . . . . . . . . Cme11g01949
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010433 1 1 0 1 1 1 2 1 0 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 0 1 1 2 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma08g01183 Cma_Chr08 FPKM 7.426852 7.183478 6.528998 6.577223 9.815635 10.428138 8.128018 12.493911 10.568316 12.525843